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View Full Version : What does the Raw data of Livingdna look like?



RedBlazedNugguts
08-22-2017, 12:36 PM
Like a picture or an example.

jdean
08-22-2017, 02:47 PM
It's a VCF file similar to BigY

#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT LD0104637A
1 565508 rs9283150 G A . . VC=SNV GT 1/1
1 727841 rs116587930 G A . . VC=SNV GT 0/0
1 752721 rs3131972 A G . . VC=SNV GT 1/1
1 756268 rs12567639 G A . . VC=SNV GT 1/1
1 759036 rs114525117 G A . . VC=SNV GT 0/0
1 794332 rs12127425 G A . . VC=SNV GT 0/0
1 801536 rs79373928 T G . . VC=SNV GT 0/0
1 815421 rs72888853 T C . . VC=SNV GT 1/1
1 830181 rs28444699 A G . . VC=SNV GT 0/0
1 834830 rs116452738 G A . . VC=SNV GT 0/0
1 835092 rs72631887 T G . . VC=SNV GT 0/0
1 838555 rs4970383 C A . . VC=SNV GT 0/0
1 838665 rs28678693 T C . . VC=SNV GT 0/0
1 840753 rs4970382 T C . . VC=SNV GT 0/1

0/0 = both have ref values
0/1 = ref and alt
1/1 = both alt

Pylsteen
08-22-2017, 05:06 PM
First there was a vcf-file, now there is (also?) a txt-file, which looks like this:

1 854250 AA rs13302982 1 861808 GG rs376747791 1 863130 AA (etc.)

the txt-file is the one you should use.

jdean
08-22-2017, 05:43 PM
First there was a vcf-file, now there is (also?) a txt-file, which looks like this:

1 854250 AA rs13302982 1 861808 GG rs376747791 1 863130 AA (etc.)

the txt-file is the one you should use.

Yep just checked and they've replaced the VCF with a more standard TXT file, I expect they got lots of emails off folk trying to work it out : )