NixYO
12-20-2019, 03:03 AM
I'm not sure of those figures, but for what is worth people from the Balearic islands do seem more Mediterranean than most in continental Spain, at least those available in G25. There's other explanations though.
I have just figured out how to use Vahaduo and nMonte3, so I have started to play around some with those two tools, and this means that I do not understand all things G25; for example, what is the difference between scaled and unscaled G25 data?
With all the Balearic, Menorcan and Mallorcan averages removed from Global25_PCA_modern_pop_averages_scaled, I get this with six samples from Global25_PCA_modern_scaled:
Spanish_Baleares:HG01613 (Vahaduo):
Distance to: Spanish_Baleares:HG01613
0.01781057 Spanish_Girona
0.02107938 Spanish_Penedes
0.02190430 Spanish_Peri-Barcelona
0.02241564 Spanish_Catalunya_Central
0.02272525 Spanish_Eivissa
0.02273257 French_Provence
0.02336282 Spanish_Castello
0.02405513 Spanish_Lleida
0.02429250 Spanish_Camp_de_Tarragona
0.02467853 Spanish_Alacant
0.02513167 Italian_Trentino-Alto-Adige
0.02564185 Italian_Veneto
0.02623788 Spanish_Pirineu
0.02628750 Spanish_Cataluna
0.02648508 Spanish_Terres_de_l'Ebre
0.02738762 Swiss_French
0.02740155 Spanish_Cantabria
0.02744768 Spanish_Castilla_La_Mancha
0.02754399 Spanish_Aragon
0.02794215 Spanish_Galicia
0.02803770 Spanish_Valencia
0.02811408 Italian_Bergamo
0.02856799 Portuguese
0.02863765 Spanish_Barcelones
0.02897953 Spanish_Murcia
Target: Spanish_Baleares:HG01613
Distance: 1.2610% / 0.01260989
30.8 Spanish_Soria
30.0 French_Paris
12.8 Italian_Umbria
11.8 Swiss_Italian
9.4 Sardinian
4.6 Greek_Thessaly
0.2 Berber_MAR_TIZ
0.2 Ju_hoan_North
0.2 Luhya_Kenya
Spanish_Baleares:HG01613 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Girona Spanish_Penedes Spanish_Peri-Barcelona
1.781057 2.107938 2.190430
Spanish_Catalunya_Central Spanish_Eivissa French_Provence
2.241564 2.272525 2.273257
Spanish_Castello Spanish_Lleida
2.336282 2.405513
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=1.4428"
Spanish_Baleares:HG01613
Spanish_Girona,46.2
Spanish_Soria,16.6
Italian_Veneto,9.8
French_Provence,9.2
Italian_Bergamo,2.4
Swiss_Italian,2.4
Italian_Umbria,1.2
Sardinian,1.2
Spanish_Penedes,1.2
French_Corsica,1
Spanish_Castello,1
Spanish_Catalunya_Central,0.8
Greek_Peloponnese,0.6
Italian_Piedmont,0.6
Spanish_Cantabria,0.6
Italian_Abruzzo,0.4
Italian_Basilicata,0.4
Italian_Lazio,0.4
Italian_Trentino-Alto-Adige,0.4
Italian_Tuscany,0.4
Spanish_Eivissa,0.4
Swiss_French,0.4
French_Paris,0.2
Greek_Central_Anatolia,0.2
Greek_Central_Macedonia,0.2
Greek_Izmir,0.2
Greek_Thessaly,0.2
Italian_Aosta_Valley,0.2
Italian_Apulia,0.2
Italian_Calabria,0.2
Italian_Northeast,0.2
Lak,0.2
Saharawi,0.2
Spanish_Alacant,0.2
Spanish_Baleares:HG01615 (Vahaduo):
Distance to: Spanish_Baleares:HG01615
0.01698449 Spanish_Eivissa
0.01760657 Spanish_Alacant
0.01785137 Spanish_Peri-Barcelona
0.01803322 Spanish_Castilla_La_Mancha
0.01881693 Spanish_Camp_de_Tarragona
0.01893240 Spanish_Valencia
0.01900640 Spanish_Girona
0.01918276 Spanish_Lleida
0.01926878 Spanish_Murcia
0.01958525 Spanish_Barcelones
0.01995145 Spanish_Andalucia
0.02002884 Spanish_Pirineu
0.02046148 Spanish_Catalunya_Central
0.02082156 Spanish_Penedes
0.02098178 Spanish_Terres_de_l'Ebre
0.02107612 Spanish_Castello
0.02118176 Spanish_Galicia
0.02135857 Spanish_Cataluna
0.02178970 Spanish_Castilla_Y_Leon
0.02244196 Portuguese
0.02252555 Spanish_Aragon
0.02348406 Spanish_Extremadura
0.02381036 Spanish_Cantabria
0.02489743 Italian_Trentino-Alto-Adige
0.02716500 French_Provence
Target: Spanish_Baleares:HG01615
Distance: 0.7739% / 0.00773855
31.4 Basque_French
20.0 Swiss_French
16.4 Italian_Veneto
14.0 Sardinian
3.6 Sorb_Niederlausitz
3.4 Macedonian
3.0 Shetlandic
2.8 Greek_Thrace
1.2 Ethiopian_Jew
1.2 Gupta
1.0 Somali
1.0 Yemenite_Al_Bayda
0.8 Ethiopian_Afar
0.2 Surui
Spanish_Baleares:HG01615 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Eivissa Spanish_Alacant
1.698449 1.760657
Spanish_Peri-Barcelona Spanish_Castilla_La_Mancha
1.785137 1.803322
Spanish_Camp_de_Tarragona Spanish_Valencia
1.881693 1.893240
Spanish_Girona Spanish_Lleida
1.900640 1.918276
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=1.2981"
Spanish_Baleares:HG01615
Spanish_Alacant,23.6
Spanish_Barcelones,17.2
Spanish_Murcia,14.4
Spanish_Castilla_La_Mancha,6.8
Spanish_Castilla_Y_Leon,6
Spanish_Girona,4.2
Italian_Trentino-Alto-Adige,2.4
Spanish_Catalunya_Central,2.2
Spanish_Lleida,2.2
Basque_French,2
Sardinian,2
Spanish_Eivissa,1.8
Spanish_Peri-Barcelona,1.6
French_South,1.4
Italian_Veneto,1.2
Italian_Liguria,0.8
Spanish_La_Rioja,0.8
Albanian,0.6
French_Corsica,0.6
Greek_Central_Macedonia,0.6
Greek_Peloponnese,0.6
Italian_Bergamo,0.6
Bosnian,0.4
Greek_Thessaly,0.4
Italian_Tuscany,0.4
Latvian,0.4
Moldavian,0.4
Sicilian_East,0.4
Sorb_Niederlausitz,0.4
Greek_Crete,0.2
Hungarian,0.2
Italian_Apulia,0.2
Italian_Basilicata,0.2
Italian_Molise,0.2
Italian_Northeast,0.2
Laka,0.2
Macedonian,0.2
Palestinian,0.2
Roma_Madrid,0.2
Romanian,0.2
Russian_Smolensk,0.2
Russian_Tver,0.2
Serbian,0.2
Sicilian_West,0.2
Spanish_Camp_de_Tarragona,0.2
Swiss_French,0.2
Swiss_German,0.2
Spanish_Baleares:HG01625 (Vahaduo):
Distance to: Spanish_Baleares:HG01625
0.01809298 Spanish_Eivissa
0.01880967 Spanish_Camp_de_Tarragona
0.01908585 Spanish_Castilla_La_Mancha
0.01929401 Spanish_Terres_de_l'Ebre
0.01959594 Spanish_Girona
0.01990842 Spanish_Lleida
0.01991219 Spanish_Peri-Barcelona
0.02102115 Spanish_Valencia
0.02139496 Spanish_Catalunya_Central
0.02152337 Spanish_Cataluna
0.02184065 Spanish_Galicia
0.02185655 Spanish_Penedes
0.02282530 Spanish_Alacant
0.02295786 Portuguese
0.02306476 Spanish_Castello
0.02308843 Spanish_Andalucia
0.02322881 Spanish_Murcia
0.02335567 Spanish_Barcelones
0.02405957 Spanish_Aragon
0.02415636 Spanish_Pirineu
0.02460213 Spanish_Cantabria
0.02509667 Spanish_Castilla_Y_Leon
0.02528561 French_Provence
0.02536679 Italian_Trentino-Alto-Adige
0.02703963 Spanish_Extremadura
Target: Spanish_Baleares:HG01625
Distance: 1.2743% / 0.01274339
36.4 Italian_Lombardy
33.4 Spanish_La_Rioja
12.8 Shetlandic
5.4 Scottish
4.8 Sardinian
1.8 Berber_MAR_TIZ
1.6 Mozabite
1.6 Spanish_Pais_Vasco
1.2 Ket
0.6 Spanish_Soria
0.2 Ju_hoan_North
0.2 Moroccan_South
Spanish_Baleares:HG01625 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Eivissa Spanish_Camp_de_Tarragona
1.809298 1.880967
Spanish_Castilla_La_Mancha Spanish_Terres_de_l'Ebre
1.908585 1.929401
Spanish_Girona Spanish_Lleida
1.959594 1.990842
Spanish_Peri-Barcelona Spanish_Valencia
1.991219 2.102115
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=1.5451"
Spanish_Baleares:HG01625
Spanish_Camp_de_Tarragona,18.2
Spanish_Terres_de_l'Ebre,16.4
Spanish_Castilla_La_Mancha,13.8
Spanish_Girona,8.6
Spanish_Eivissa,5.8
Spanish_Lleida,5.8
Spanish_Catalunya_Central,4
Italian_Trentino-Alto-Adige,3.2
French_Provence,3
Spanish_La_Rioja,2.4
Italian_Lombardy,1.6
Spanish_Cataluna,1.6
Spanish_Soria,1.4
Italian_Bergamo,0.8
Italian_Liguria,0.8
Portuguese,0.8
Spanish_Cantabria,0.8
French_Auvergne,0.6
Italian_Abruzzo,0.6
Italian_Veneto,0.6
Sardinian,0.6
Spanish_Asturias,0.6
Albanian,0.4
Algerian,0.4
Berber_MAR_ERR,0.4
Dutch,0.4
Greek_Izmir,0.4
Italian_Marche,0.4
Italian_Piedmont,0.4
Moldavian,0.4
Serbian,0.4
Shetlandic,0.4
Tunisian_Jew,0.4
Berber_Tunisia_Chen,0.2
English_Cornwall,0.2
Finnish,0.2
French_Alsace,0.2
French_Corsica,0.2
French_Nord,0.2
French_Paris,0.2
Italian_Apulia,0.2
Italian_Molise,0.2
Italian_Northeast,0.2
Italian_Umbria,0.2
Libyan,0.2
Maltese,0.2
Moroccan_Jew,0.2
Norwegian,0.2
Saharawi,0.2
Scottish,0.2
Spanish_Canarias,0.2
Spanish_Mallorca:ALE339 (Vahaduo):
Distance to: Spanish_Mallorca:ALE339
0.01729408 Spanish_Galicia
0.01759418 Portuguese
0.01859640 Spanish_Castilla_Y_Leon
0.01911293 Spanish_Eivissa
0.01995368 Spanish_Andalucia
0.02051130 Spanish_Castilla_La_Mancha
0.02089698 Spanish_Extremadura
0.02139952 Spanish_Valencia
0.02261570 Spanish_Murcia
0.02273186 Spanish_Camp_de_Tarragona
0.02308351 Spanish_Alacant
0.02343329 Spanish_Aragon
0.02345585 Spanish_Cataluna
0.02362398 Spanish_Girona
0.02371476 Spanish_Peri-Barcelona
0.02376154 Spanish_Terres_de_l'Ebre
0.02488948 Spanish_Penedes
0.02491333 Spanish_Lleida
0.02531728 Spanish_Barcelones
0.02612313 Spanish_Pirineu
0.02818708 Spanish_Catalunya_Central
0.02952318 French_Provence
0.02993045 Spanish_Castello
0.03066287 Italian_Trentino-Alto-Adige
0.03169586 Spanish_Navarra
Target: Spanish_Mallorca:ALE339
Distance: 1.1075% / 0.01107470
30.0 Spanish_Pais_Vasco
29.2 Spanish_Aragon
10.4 Moroccan_Jew
8.8 Greek_Thessaly
7.8 English_Cornwall
7.0 Bosnian
4.2 Saharawi
1.6 Czech
0.8 Gupta
0.2 Kubachinian
Spanish_Mallorca:ALE339 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Galicia Portuguese
1.729408 1.759418
Spanish_Castilla_Y_Leon Spanish_Eivissa
1.859640 1.911293
Spanish_Andalucia Spanish_Castilla_La_Mancha
1.995368 2.051130
Spanish_Extremadura Spanish_Valencia
2.089698 2.139952
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=1.3841"
Spanish_Mallorca:ALE339
Spanish_Galicia,29.6
Spanish_Castilla_Y_Leon,24.4
Portuguese,10.4
Spanish_Aragon,6.6
Spanish_Castilla_La_Mancha,3.8
Italian_Liguria,2.6
Spanish_Barcelones,2.2
Spanish_Pais_Vasco,2.2
Spanish_Girona,2
Spanish_Asturias,1.6
Spanish_Terres_de_l'Ebre,1.2
French_Alsace,0.6
Moldavian,0.6
Slovakian,0.6
Swiss_French,0.6
Berber_MAR_ERR,0.4
Dutch,0.4
English_Cornwall,0.4
Greek_Central_Anatolia,0.4
Greek_Crete,0.4
Italian_Aosta_Valley,0.4
Italian_Lombardy,0.4
Italian_Tuscany,0.4
Maltese,0.4
Tajik_Ishkashim,0.4
Abazin,0.2
Ashkenazi_Jew,0.2
BedouinB,0.2
Belarusian,0.2
Berber_Tunisia_Sen,0.2
Bosnian,0.2
Egyptian,0.2
French_Brittany,0.2
Georgian_Jew,0.2
Greek_Thessaly,0.2
Hungarian,0.2
Icelandic,0.2
Italian_Bergamo,0.2
Italian_Jew,0.2
Italian_Marche,0.2
Italian_Piedmont,0.2
Italian_Veneto,0.2
Karachay,0.2
Lebanese_Druze,0.2
Macedonian,0.2
Norwegian,0.2
Roma_Barcelona,0.2
Romanian,0.2
Saharawi,0.2
Scottish,0.2
Serbian,0.2
Sorb_Niederlausitz,0.2
Spanish_Valencia,0.2
Swiss_German,0.2
Syrian,0.2
Tajik,0.2
Talysh_Azerbaijan,0.2
Turkish_Trabzon,0.2
Welsh,0.2
Yemenite_Dhamar,0.2
Spanish_Mallorca:CAL026 (Vahaduo):
Distance to: Spanish_Mallorca:CAL026
0.02199682 Spanish_Penedes
0.02436318 Spanish_Barcelones
0.02446846 Spanish_Lleida
0.02454027 Spanish_Peri-Barcelona
0.02464058 Spanish_Girona
0.02466369 Spanish_Cataluna
0.02482048 Spanish_Alacant
0.02524158 Spanish_Eivissa
0.02528019 French_Provence
0.02570779 Spanish_Camp_de_Tarragona
0.02596303 Spanish_Catalunya_Central
0.02650786 French_Auvergne
0.02672489 Spanish_Pirineu
0.02693569 Spanish_Galicia
0.02700160 Spanish_Terres_de_l'Ebre
0.02724515 Swiss_French
0.02750289 Spanish_Valencia
0.02753866 Spanish_Castello
0.02770603 Spanish_Cantabria
0.02817820 French_Occitanie
0.02837239 Spanish_Castilla_La_Mancha
0.02849569 Spanish_Aragon
0.02867808 Spanish_Castilla_Y_Leon
0.02946220 Portuguese
0.02994904 Spanish_Andalucia
Target: Spanish_Mallorca:CAL026
Distance: 1.3611% / 0.01361121
36.6 Spanish_Pais_Vasco
13.6 French_Brittany
12.6 Spanish_Soria
9.2 Abkhasian
6.0 Sardinian
6.0 Spanish_Alacant
4.0 Russian_Smolensk
3.8 Shetlandic
3.6 Spanish_Castilla_Y_Leon
1.8 Swiss_Italian
1.0 Ju_hoan_North
1.0 North_Ossetian
0.4 Ethiopian_Ari
0.4 Georgian_Laz
Spanish_Mallorca:CAL026 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Penedes Spanish_Barcelones Spanish_Lleida
2.199682 2.436318 2.446846
Spanish_Peri-Barcelona Spanish_Girona Spanish_Cataluna
2.454027 2.464058 2.466369
Spanish_Alacant Spanish_Eivissa
2.482048 2.524158
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=1.8667"
Spanish_Mallorca:CAL026
Spanish_Penedes,31.6
Spanish_Alacant,16.8
Spanish_Cataluna,10.2
Spanish_Barcelones,10
Spanish_Cantabria,3.2
Spanish_Castilla_Y_Leon,2.4
Spanish_Pais_Vasco,2
Swiss_French,2
French_Brittany,1.2
Shetlandic,1.2
Spanish_Lleida,1
Swiss_German,1
Portuguese,0.8
Spanish_Eivissa,0.8
Basque_French,0.6
English,0.6
English_Cornwall,0.6
French_Paris,0.6
Italian_Aosta_Valley,0.6
Orcadian,0.6
Scottish,0.6
Avar,0.4
Dutch,0.4
French_Alsace,0.4
French_Provence,0.4
German,0.4
German_East,0.4
Greek_Trabzon,0.4
Ingrian,0.4
Italian_Liguria,0.4
Italian_Umbria,0.4
Spanish_Canarias,0.4
Welsh,0.4
Abazin,0.2
Azeri_Turkey,0.2
Belgian,0.2
Berber_Tunisia_Chen,0.2
Cossack_Kuban,0.2
Croatian,0.2
Finnish_East,0.2
French_Occitanie,0.2
Gagauz,0.2
Greek_Central_Anatolia,0.2
Greek_Crete,0.2
Icelandic,0.2
Italian_Calabria,0.2
Italian_Marche,0.2
Italian_Piedmont,0.2
Kabardin,0.2
Kaitag,0.2
Kumyk,0.2
Lebanese_Muslim,0.2
Macedonian,0.2
Masai,0.2
Norwegian,0.2
Roma_Balkans,0.2
Russian_Kostroma,0.2
Russian_Smolensk,0.2
Saami,0.2
Sicilian_West,0.2
Spanish_Peri-Barcelona,0.2
Spanish_Pirineu,0.2
Spanish_Soria,0.2
Syrian_Jew,0.2
Tatar_Mishar,0.2
Turkish_Kayseri,0.2
Turkish_North,0.2
Spanish_Mallorca:GRA135 (Vahaduo):
Distance to: Spanish_Mallorca:GRA135
0.02923704 Spanish_Girona
0.02954829 Spanish_Castello
0.02978200 Spanish_Alacant
0.02994584 Spanish_Peri-Barcelona
0.03005432 Spanish_Catalunya_Central
0.03065467 Spanish_Eivissa
0.03115939 Spanish_Penedes
0.03129645 Spanish_Camp_de_Tarragona
0.03165649 Spanish_La_Rioja
0.03181068 Spanish_Lleida
0.03211340 Spanish_Cataluna
0.03235675 French_Provence
0.03285614 Spanish_Pirineu
0.03293166 Spanish_Murcia
0.03368905 Italian_Trentino-Alto-Adige
0.03383523 Italian_Veneto
0.03395015 Spanish_Valencia
0.03430442 Portuguese
0.03457453 Spanish_Castilla_La_Mancha
0.03478424 Spanish_Galicia
0.03484257 Spanish_Barcelones
0.03492597 Swiss_French
0.03519741 Spanish_Terres_de_l'Ebre
0.03561226 Spanish_Cantabria
0.03567005 Spanish_Soria
Target: Spanish_Mallorca:GRA135
Distance: 1.6544% / 0.01654357
57.2 Spanish_La_Rioja
19.8 Montenegrin
9.8 Spanish_Soria
5.2 Kurdish
3.4 Sardinian
2.8 Shetlandic
1.4 Masai
0.4 Yakut
Spanish_Mallorca:GRA135 (nMonte3):
[1] "1. CLOSEST SINGLE ITEM DISTANCE%"
Spanish_Girona Spanish_Castello Spanish_Alacant
2.923704 2.954829 2.978200
Spanish_Peri-Barcelona Spanish_Catalunya_Central Spanish_Eivissa
2.994584 3.005432 3.065467
Spanish_Penedes Spanish_Camp_de_Tarragona
3.115939 3.129645
[1] "2. FULL TABLE nMONTE"
[1] "penalty= 0.001"
[1] "Ncycles= 1000"
[...]
[1] "distance%=2.0005"
Spanish_Mallorca:GRA135
Spanish_La_Rioja,46.6
French_Provence,18
Spanish_Soria,11
Swiss_Italian,6
Italian_Veneto,5.4
Italian_Northeast,3.4
Swiss_French,1.2
Albanian,0.6
Greek_Izmir,0.6
Montenegrin,0.6
Bulgarian,0.4
Italian_Molise,0.4
Moroccan,0.4
Assyrian,0.2
Berber_MAR_ERR,0.2
Bosnian,0.2
Cossack_Kuban,0.2
Croatian,0.2
Ethiopian_Agaw,0.2
Greek_Peloponnese,0.2
Greek_Thessaly,0.2
Greek_Thrace,0.2
Iranian_Lor,0.2
Iraqi_Jew,0.2
Italian_Basilicata,0.2
Italian_Calabria,0.2
Italian_Campania,0.2
Italian_Jew,0.2
Italian_Lazio,0.2
Italian_Umbria,0.2
Kabardin,0.2
Lithuanian_PA,0.2
Lithuanian_SZ,0.2
Macedonian,0.2
Moldavian,0.2
Palestinian_Beit_Sahour,0.2
Saharawi,0.2
Serbian,0.2
Spanish_Alacant,0.2
Spanish_Girona,0.2
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