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shadowhite
03-02-2020, 02:35 PM
hi
i'm update the hg19 file in:BAM-Analysis-Kit\bin\yleaf\Position_files
by isogg 2019 data

https://www.mediafire.com/file/ijx3vzahsppai4d/hg19.rar/file

but not work

Other files may also need to be edited!
For example:
Hg_Prediction_tables

teepean47
03-16-2020, 07:09 PM
Latest version has updated position files.

https://github.com/genid/Yleaf/tree/v2.2

teepean47
04-22-2020, 06:50 AM
I have been working on fixing your updated positions and it seems to be working but needs more testing. How did you create the updated file?

EDIT:

Here's an updated file. I had to remove indels and one line had : character which Yleaf didn't like.

http://www.mediafire.com/file/2d79frbofyx8cy0/hg19test.7z/file

shadowhite
06-01-2020, 01:47 PM
I have been working on fixing your updated positions and it seems to be working but needs more testing. How did you create the updated file?



Yes, Sure

shadowhite
06-02-2020, 03:37 PM
I have been working on fixing your updated positions and it seems to be working but needs more testing. How did you create the updated file?



First

Download data from (example):

https://isogg.org/tree/HaplogroupR2019.html

Then open the file in Microsoft Excel

We also drag and drop the hg19.txt or hg19.ref file into Excel

Then go to the 2019HaplogroupR.xlsx file
Scroll down to the data section and replace the data in the hg19 file
And we save at the end
https://i.imgur.com/2cUMLEu.png

shadowhite
06-02-2020, 03:48 PM
Latest version has updated position files.

https://github.com/genid/Yleaf/tree/v2.2

Of course, two weeks before this release, I sent the file to the creators, who may have applied the new Data