PDA

View Full Version : Medieval genomes from Nubia



drobbah
02-18-2021, 01:51 AM
66 genomes from Nubia have been sequenced.



We find that the Kulubnarti Nubians were admixed with ~43% Nilotic-related ancestry on average (individual proportions varied between ~36-54%) and the remaining ancestry reflecting a West Eurasian-related gene pool likely introduced into Nubia through Egypt, but ultimately deriving from an ancestry pool like that found in the Bronze and Iron Age Levant. The admixed ancestry at Kulubnarti reflects interactions between genetically-distinct people in northeast Africa spanning almost a millennium, with West Eurasian ancestry disproportionately associated with females, highlighting the impact of female mobility in this region.


Basically these Nubians range between Somalis (55% SSA) and modern Egyptian SSA outliers.




https://www.biorxiv.org/content/10.1101/2021.02.17.431423v1

drobbah
02-18-2021, 02:55 AM
57% Levant Bronze age "Semitic"? alot of J1's , T's and G's ,R-L294 , alot of European Mtdna H2 and U5
Of course I expected this Result it Match the Archeological and genetical record perfectly , Get prepared for 65% Levantine Bronze age Nubians..
From what those more knowledgeable than me have said, it seems even Horners can be modeled as Levant BA derived in terms of our West Eurasian ancestry on qpadm.Nothing about this surprising but I think you are getting ahead of yourself in claiming that Ancient Nubia was 65% West Eurasian.Also the authors of this study claimed that it was female mediated which means they were probably rich in E-M78/M35 lineages imo especially E-V12 & V32 alongside paternal Nilo-Saharan haplogroups of A & B.


Ancient DNA analysis of subadult specimens from these burial sites found that the mainland samples predominantly carried European and Near Eastern mtDNA clades, such as the K1, H, I5, and U1 lineages; only 36.4% of the mainland individuals belonged to African-based maternal haplogroups. By contrast, 70% of the specimens at the island burial site bore African-based clades, among which were the L2, L1 and L5 mtDNA haplogroups.

drobbah
02-18-2021, 03:02 AM
The implications of this study is the vast majority of Sudanese Arabs & Nubians weren't really impacted by the Islamization and Bedouin Arab migrations

blackflash16
02-18-2021, 03:11 AM
The implications of this study is the vast majority of Sudanese Arabs & Nubians weren't really impacted by the Islamization and Bedouin Arab migrations

We'll know more when the data is released but I think there may actually be significant Arab ancestry in modern Sudanese populations but in a mix of Kulubnarti-Like + East-Sahelian + Upper-Nile/Nilotic + Arab

Mnemonics
02-18-2021, 03:50 AM
The paper also noted that the West Eurasian admixture seems female mediated when looking at the X chromosomes (57.5 vs 64.4) as well, I wonder how that happened.

Mnemonics
02-18-2021, 04:01 AM
The implications of this study is the vast majority of Sudanese Arabs & Nubians weren't really impacted by the Islamization and Bedouin Arab migrations

The paper explicitly claims the opposite. The author states that they have relatively similar PCA positions to modern Nubians, but cannot be modeled the same way.

drobbah
02-18-2021, 04:11 AM
The paper explicitly claims the opposite. The author states that they have relatively similar PCA positions to modern Nubians, but cannot be modeled the same way.
Wouldn't that mean the ancestors of the modern Nubians were more SSA than these medieval Nubians pre-arab admixture? Perhaps these Nubians were a dead end population but who knows.We will just have to wait and see

Mnemonics
02-18-2021, 04:17 AM
Wouldn't that mean the ancestors of the modern Nubians were more SSA than these medieval Nubians pre-arab admixture? Perhaps these Nubians were a dead end population but who knows.We will just have to wait and see

Could be that they gained more Nilotic and Bedouin-like ancestry, but I doubt that's the case considering that the model should still work if that were the true.

Edit: I'm a bit annoyed that they didn't include which Eurasian haplogroups were found. Is it listed anywhere? I would assume T, J, G and R are the most likely haplogroups (maybe I too since it's present in some Sudanese groups).

Michalis Moriopoulos
02-18-2021, 04:26 AM
Finally! It's here!

It will be very interesting to see if some of the SSA ancestry in Copts can be traced to these guys, as I have theorized much of their SSA affinity might have come from medieval Nubian Christians. Of course, there are other possibilities, especially if Copts also owned slaves during the Islamic period as some here have postulated.

This would really be a good time to have some modern Nubian genomes in the G25. It's a shame we don't, because then we could model them ourselves when this Kulubnarti data becomes public.

ThaYamamoto
02-18-2021, 04:51 AM
A part of me is nervous cuz they've merged Hollfelder's data as part of their final dataset so if they are using the same pipeline the samples will be of no use to the g25 like Hollfelder's Sudanese. Will have to wait and see but I'm not getting my hopes up.

Michalis Moriopoulos
02-18-2021, 05:58 AM
A part of me is nervous cuz they've merged Hollfelder's data as part of their final dataset so if they are using the same pipeline the samples will be of no use to the g25 like Hollfelder's Sudanese. Will have to wait and see but I'm not getting my hopes up.

Tell me about it. It's disheartening seeing those juicy Hollfelder samples in that Sirak spreadsheet knowing there aren't enough overlapping SNPs to include them in the G25. Copts, Nubians, Beja, Sudanese Arabs, Nuba-- talk about a hole that desperately needs to be filled.

blackflash16
02-18-2021, 06:07 AM
Could be that they gained more Nilotic and Bedouin-like ancestry, but I doubt that's the case considering that the model should still work if that were the true.

Edit: I'm a bit annoyed that they didn't include which Eurasian haplogroups were found. Is it listed anywhere? I would assume T, J, G and R are the most likely haplogroups (maybe I too since it's present in some Sudanese groups).

The Biorxiv page has supplementary information and data on the right-hand side.

Also, I can't find any attempts to model modern Sudanese as anything other than completely Kulubnarti-like, so them being referred to as not being "direct" descendants of Kulubnarti just means they might have additional African-W.Eurasian ancestry:



Present-day Nubians are not directly descended from the Christian Period people from Kulubnarti without additional admixture, attesting to the dynamic history of interaction that continues to shape the cultural and genetic landscape of Nubia.



Y-DNA


Master ID (Lab)Skeletal CodeY haplogroup in terminal mutation notation Y haplogroup in ISOGG v15.73 notationLikely Geographic Origin/Primary Distribution of Haplogroup
I6138*R101*E-GG24E1b1b1b2b3aAfrica
I19140R123LTLTWest Eurasia
I6139R124E-V22E1b1b1a1b2Africa
I19014R15E-V32E1b1b1a1a1bAfrica
I19143R150E-Z1919E1b1b1a1Africa
I6340R169T-Y31477T1a1a1a1West Eurasia
I6252R181E-Y125054E1b1b1a1a1cAfrica
I6327R196E-BY7923E1b1b1a1a1b1a1Africa
I6328R201T-L208T1a1aWest Eurasia
I19015R21E-Y161115E1b1b1a1a1cAfrica
I19132R57E-L1250E1b1b1a1b2Africa
I6250R59E-BY7923E1b1b1a1a1b1a1Africa
I6331*R93*E-GG24E1b1b1b2b3aAfrica
I19138R96E-Y125054E1b1b1a1a1cAfrica
I18508S115E-FGC14382E1b1b1a1a1b1a1Africa
I17475S144J-M92J2a1a1a2b2a1aWest Eurasia
I6332S159E-M41E2aAfrica
I18612^S16^E-Y125054E1b1b1a1a1cAfrica
I18514S182E-Y6730E1b1b1a1a1cAfrica
I6334S198G-L140G2a2b2a1West Eurasia
I18520S217J-YSC0000234J1a2a1a2d2b2b2West Eurasia
I6336S27E-Y161113E1b1b1a1a1cAfrica
I18610^S29^E-Y125054E1b1b1a1a1cAfrica
I6254S33R-L295R2a2b1b2bWest Eurasia
I17481S45E-CTS2294E1b1b1a1a1b1aAfrica
I6255S50J-M92J2a1a1a2b2a1aWest Eurasia
I6325S73J-M92J2a1a1a2b2a1aWest Eurasia
I6337S79G-L140G2a2b2a1West Eurasia
I6257S81J-BY94J1a2b2bWest Eurasia
I17482S94bG-P15G2aWest Eurasia




mtDNA


Master ID (Lab)Skeletal codeHaplogrep 2 call
I6138*R101*H2a
I19014R15H2a
I19144R164H2a
I6252R181H2a
I6253R202H2a
I19132R57H2a
I6250R59H2a
I6331*R93*H2a
I18510S136H2a
I6258S149H2a
I17451S15H2a
I18612S16H2a
I18514S182H2a
I6338S89H2a
I17473S68bHV13a
I6328R201J2a2e
I18519S208J2a2e
I6139R124K1a19
I19139R103L0a1a1
I6251R152L0a1a1
I19134R84L0a1a1
I6254S33L0a1a1
I6255S50L0a1a1
I18518S201L1b1a2a
I6334S198L1b1a2a
I17482S94bL1b1a2a
I6141R186L2a1+143A +16189T! (16192T)
I19143R150L2a1d1
I19145R173L2a1d1
I6327R196L2a1d1
I18509^S132^L2a1d1
I6324^S133^L2a1d1
I17475#S144#L2a1d1
I17449S147L2a1d1
I6332S159L2a1d1
I18520S217L2a1d1
I18522S235L2a1d1
I18538S53L2a1d1
I6256#S68a#L2a1d1
I6325S73L2a1d1
I6257S81L2a1d1
I6326S87L2a1d1
I19138R96L3b1a2
I18511S143L3f1a1
I19140R123L5a1b
I19136R94L5a1b
I17477S24L5a1b
I6337S79L5a1b
I18536S42bN1a1a
I6329R5N1b1a2
I18517S2N1b1a2
I18521S218N1b1a2
I19135R91R0a1a
I6333S17T1a7
I6330R79U1a1
I19148R195U3b
I6340R169U5b2b5
I6140R182U5b2b5
I19015R21U5b2b5
I18507S114U5b2b5
I18508S115U5b2b5
I6336S27U5b2b5
I18610S29U5b2b5
I18525S37U5b2b5
I17481S45U5b2b5
I17450S51U5b2b5

drobbah
02-18-2021, 06:44 AM
They are dominated by E-M78 and those are almost entirely lineages of E-V12.I count 6 E-V32 and 7 other subclades of V12 giving E-V12+ a total of 13 with I think only two E-V22+ samples.These Nubians fall under the E-V32 subclades that modern Sudanese & Northern Horners currently fall under

Justnotyou
02-18-2021, 11:47 AM
They are dominated by E-M78 and those are almost entirely lineages of E-V12.I count 6 E-V32 and 7 other subclades of V12 giving E-V12+ a total of 13 with I think only two E-V22+ samples.These Nubians fall under the E-V32 subclades that modern Sudanese & Northern Horners currently fall under

Also these are Christian converts Nubians. It's very interesting but I don't see anything surprising. Kulb was an active copper industry site for the ancient Egyptians, it was only later during the 5th century, after the collapse of Kush, inhabited by Christian Nubians & some Copts. If anything it illustrates a demic diffusion of an admixed community.

Justnotyou
02-18-2021, 12:07 PM
The implications of this study is the vast majority of Sudanese Arabs & Nubians weren't really impacted by the Islamization and Bedouin Arab migrations

It certainly implies that when factoring audna but it doesn't explain the sudden inflation of the Haplogroup J frequency in modern Nubians & Ja'alins...

The Saite
02-18-2021, 02:13 PM
THIS IS FANTASTIC. Although I would have appreciated more older DNA. But still it's illuminating!

One problem with the site tho, is that the Island of Kulubnarti (https://blog.britishmuseum.org/historical-city-travel-guide-kulubnarti-sudan-late-12th-century/) was firstly inhabited in the middle ages with a noted importance during and after the Christianization of Nubia via Byzantine missionaries. We have Coptic and Greek language findings along with Old Nubian attested at the area, the site was always known to have specifically two interesting cemeteries in the literature. One for the higher social statues individuals, whose results here, have an approximate of 80% E-M35 Haplogroups with the rest being T-L208 clades. Their MT-DNA is predominately West Eurasian at a rate of 60%. While the Lower status groups in the other cemetery had only 30% of E-M35 with the rest being J, G, R2 and E2. And they also enjoyed higher African MT-DNA compared to the previous !
According to the Oxford Handbook of Ancient Nubia in Pages 899 and 1015 (https://books.google.com.sa/books?id=amkLEAAAQBAJ&printsec=frontcover&hl=ar#v=onepage&q&f=false), the medieval and late antiquity Nubian states, did have a complex slave treating system. We don't even have a mention of the status (Commoners) except in some rare texts that mentioned (Slaves) and (captives) as well. It might be that slaves were turned and/or treated as (commoners) actually. Specially that there are obvious texts of important position in the state government handled up to (slaves).

Nubia at this point of history wasn't at all isolated from their Northern neighbors. Strabo mentioned a certain Roman Aelius Gallus, that attacked -as representative of Rome- the Nubians with his Egypto-Levantine Army. A certain Egyptian settlers were described by Strabo in Nubia as well. Actually among those Parental haplogroups, I'm seeing obvious Egyptian influence, in both the E-V12 non V32 lineages and the E-L1250 subclade of E-V22. U5b2b5 might be as well, I do even see My T1a7 (https://yfull.com/mtree/T1a7/) there :lol:
Other haplogroups do contain Egyptian based clusters as I see, like the G and R2 (I came across R2 upper Egyptian sample before, seems a good time now to share it's STR Markers, might be related to Iran Neolithic?).
Additionally, I see it very inappropriate to group IA Levant with the former BA Levant samples in 'one' ancestry to model these Nubians. For example the 3rd millennium BC EBA Jordonian samples are pretty close to those 600 - 300 BC Egyptians of Abusir. But they aren't close with the counterpart Iron age Levant samples at all. Even some LBA Levant individuals aren't what we call a ''continuity'' with those Jordanians without having additional shifts, no doubt the 56% of Eurasian ancestry aren't derived from one source. The existence of the Dinka-related outliers as well as the west Eurasian ones is reflecting -in my opinion- not only the heterogeneous nature of the society but also a sign of increased migratory events through times, the biggest was the Arab one in later of course and I'm expecting West African ancestry too -for reasons in Islamic age- as well as higher Dinka as you guys noted.

At the first glance of seeing the Parental haplogroups. I thought this would be something representing a continuity with the earlier Kush Kingdom (Egyptian + Local people fusion). But the samples came after a period of the Nubae migration to the area. Hence an increased of supposedly Nilotic-related ancestry should have been. We however see only 1 E2 results. But their influence is still more sensed in the Maternal side.. I don't think the phrase of "Eurasian ancestry was introduced mostly through females" is totally accurate since an earlier study in 2016 (https://www.bib.irb.hr/824672?&lang=EN&rad=824672), discovered heterogeneity in the same Kulubnarti Area (specimen dated to AD 550-800 too) where some groups had a 70% African based MT-DNA compared to others boring only 36%.

In my opinion, this study if grouped with the previous ones. Shows a Coptic and Greek (And/or Levantine groups) admixture with local pre christian era North Sudan groups. This explains the heterogeneity conclusion we had (in tested individuals of 2016) while a relative homogeneity with a still many observed outliers in current study's samples. Yet the Existence of the West Eurasian Y-DNA among the lower class is puzzling. I couldn't thought of anything but the Nubian Slave-Commoner system for it. So these might reflect earlier historical periods prior to the inhabiting of the island. The Finding of J-BY94 (https://www.yfull.com/tree/J-BY94/) (looks European kind of J1 that have presence in Greeks) also R2, E-CTS10880 and J1-YSC000234. Were all really unexpected to me personally. Although they could be explained. I wonder if the E-Z1919 (https://www.yfull.com/tree/E-Z1919/) sample turned out to be E-V13 eventually. I won't be surprised, Even it's likely some sort of E-V22.
Morphology freaks should read this study in details too. For they to recognize how conflicted it is with some skeletal studies existing in the literature with really far fetched theories about them. Thanks for share, Drobbah. It made my day!

drobbah
02-18-2021, 02:40 PM
Even that E2 result might not really be Eastern Sudanic either as I think one of the Early Pastoralists had it aswell.I'm shocked at the lack of Nilo-Saharan related y-dna (A & B ), perhaps these people were admixed descendants of the original Afro-Asiatic Cushitic inhabitants of Lower Nubia.We still need older samples from other parts of Nubia,Eastern Desert and hopefully both parts of historical Egypt.

gihanga.rwanda
02-19-2021, 01:24 AM
Even that E2 result might not really be Eastern Sudanic either as I think one of the Early Pastoralists had it aswell.I'm shocked at the lack of Nilo-Saharan related y-dna (A & B ), perhaps these people were admixed descendants of the original Afro-Asiatic Cushitic inhabitants of Lower Nubia.We still need older samples from other parts of Nubia,Eastern Desert and hopefully both parts of historical Egypt.

I have the same suspicions. I suspect that the yDNA A/B lineages and excess Dinka-like ancestry in Nubians and Sudanese Arabs (the first point applies to Sudanese Copts as well) can be attributed to the Nobatae who originated in what is now Darfur; the original Nobatae might have been similar to the present day Midob (https://en.m.wikipedia.org/wiki/Midob_people).

I wonder if the people of Kulubnarti, located near the border with Egypt, were more representative of the pre-Nobatae inhabitants of this part of the Nile Valley. These people lived several centuries after the Nobatae first migrated to Lower Nubia in 300-400 AD (Meroe was disestablished in 350 AD and replaced by Nobatia in 400 AD) but we should remember that the Nobatae were nomads and might not have immediately assimilated by the sedentary, riverine inhabitants. We know from ancient DNA from SE Africa and elsewhere, as well as ongoing interactions between similar groups in the Sahel, that it could take generations and even centuries for pastoralists to settle down and blend in with sedentary communities. I am no expert on ancient Sudanese history and archeology, but could the “fall” of Christian Nubia have led to the breakdown of these hypothetical barriers to genetic exchange?

Though, we’ll need more ancient DNA from Mesolithic-Meroitic Nubia to account for potential Pharaonic era gene flow into this population.

It looks like two of the unipaternal lineages (E2 and K1a) detected in the early Kenyan pastoralists are present in these Christian Nubians. It would be interesting if we can establish a relationship even though they’re separated by time and space.

gihanga.rwanda
02-19-2021, 02:19 AM
On a related note, if yDNA A remains illusive in Lower Nubia, I wonder where Cushitic related groups picked it up?

Perhaps groups like the Gumuz and Kunama were more prevalent in the Ethiopian highlands? Both groups are rich in A-M13 and we know that the Gumuz have an ancient presence in the region since they have significant Mota-related ancestry with only minor Omotic or Cushitic admixture.

Justnotyou
02-19-2021, 12:52 PM
I have the same suspicions. I suspect that the yDNA A/B lineages and excess Dinka-like ancestry in Nubians and Sudanese Arabs (the first point applies to Sudanese Copts as well) can be attributed to the Nobatae who originated in what is now Darfur; the original Nobatae might have been similar to the present day Midob (https://en.m.wikipedia.org/wiki/Midob_people).

I wonder if the people of Kulubnarti, located near the border with Egypt, were more representative of the pre-Nobatae inhabitants of this part of the Nile Valley. These people lived several centuries after the Nobatae first migrated to Lower Nubia in 300-400 AD (Meroe was disestablished in 350 AD and replaced by Nobatia in 400 AD) but we should remember that the Nobatae were nomads and might not have immediately assimilated by the sedentary, riverine inhabitants. We know from ancient DNA from SE Africa and elsewhere, as well as ongoing interactions between similar groups in the Sahel, that it could take generations and even centuries for pastoralists to settle down and blend in with sedentary communities. I am no expert on ancient Sudanese history and archeology, but could the “fall” of Christian Nubia have led to the breakdown of these hypothetical barriers to genetic exchange?

Though, we’ll need more ancient DNA from Mesolithic-Meroitic Nubia to account for potential Pharaonic era gene flow into this population.

It looks like two of the unipaternal lineages (E2 and K1a) detected in the early Kenyan pastoralists are present in these Christian Nubians. It would be interesting if we can establish a relationship even though they’re separated by time and space.

Nubian history is quite interesting, the groups depending on period & even region might be pretty divergent due to the series of deminc diffusion into the region. With more genetic papers & authoritative sources I believe a similar pattern will be visible.

Lithic pre-pottery industry 30,000 BCE= Nubian complex

Lithic pottery industry 7,000BCE= Early Khartoum culture

Lithic pottery industry 5,000BCE= Abkan culture
https://www.researchgate.net/publication/299458148_Abkan_Connections_The_relationship_betwe en_the_Abkan_culture_in_the_Nile_valley_and_Early_ Nubian_sites_from_the_Laqiya_Region_Eastern_Sahara _Northwest-Sudan

Protocity Kerma= unknown.

A group/ancient Kerma culture 3000 BCE = most likely genetically similar to the Ta_seti upper Egyptians. Language family unknown.

B group = probably early Meroitic eastern Sudanic.

C group/pan grave culture 2,000BCE = the people will definitely cluster with the average modern Horner, language shifts to proto-cushitic or BEJA like.

Late Meroetic Kush 500BCE = the people still cluster with the beja but the language shifts to eastern Sudanic with loan words from proto-cushitic/beja like.

Disintegrated into 3 polities/Christian period 400CE= the language shifts to old Nubian, still eastern Sudanic. While some like these Kulubnartians still cluster genetically with the average Horner but the mtdna shifts greatly to Eurasian, meaning at least there are two different communities living adjacent to each other.

Formal Islamization 14th century= The ottomans/mamluks influence the lower Nubian kingdoms, new arabic dialects develop, later Ja'alin & some Shuwa Arabs become more prevalent, Trans-saharan slavery takes hold.

FUNJ sultanate 15th century = language remains eastern Sudanic except for the beja in the east, some of the rulers are even made up of shilluk nilotes, the mtdna of the average Nubian shifts to being overwhelmingly African. West African ancestry makes its way into the average Nubian.

20th century Sudanese culture= pro-arab shift, some Nubian languages go extinct, haplogroup J takes hold, mtdna remains overwhelmingly African like...

I bet haplogroup A & B were more prominent in the early cultures pre-1000 BCE, since pottery making noted in Sudan precede pottery making Levantines who aren't even credited for the Eurasian shift in modern East Africans, The PPNB, PPNC & even the natufians probably met these pottery makers who should be more pristine AEA & then later the Haplogroups A&B completely disappears in lower Nubians with the growth of the pan grave culture Cushites, the Christian period should have some haplogroup A & B via the migrating Noba people I mean it's even noted in modern Egyptian Copts, Khartoum Nubians who're non-Ja'alin affiliated still bare it, sennar people will undoubtedly have it if properly tested.

drobbah
02-19-2021, 01:37 PM
From what I read B-group is just an impoverished form of A-group culture.Don't know how you came to the conclusion that it was Eastern Sudanic.The A-group were most likely Cushitic speakers as some of the chiefdom names like Wawat or Irtet seem to be cushitic origin.The A-group were culturally distinct from the Naqada Egyptians so no they weren't some proto-Upper Egyptians.The A-group and some of the C-group were probably linguistically related to the Medjay (Beja ancestors) and represent a group of related languages that diverged early from the rest of the Cushitic family.

Lower Nubia during the C-group era was probably mixed.The A-group represented the Cushitic locals,there was nearby cushitic nomads (medjay) to east with a small population also living in the Libyan desert and the arrival of Eastern Sudanic speakers who scattered from Wadi Howar toward Lower Nubia which is why the C-group culture extended further south than the A-group.This is probably when the linguistic shift to Sudanic languages happened and why the later Kerma culture also spoke a Sudanic language.

In Lower Nubia's case during the c-group period, I think the vast majority maintained their cushitic intermediate profile while living alongside the more sub-saharan Sudanic migrants.Which is why throughout Nubian history there were very different depictions of the Nubians by the Egyptians as it was an ethnically heterogenous region

maroco
02-19-2021, 02:03 PM
I served some Sudanese people and The ladies phenotype was almost Spanish she looked a lot more Arab then me, what’s the highest amount of Arabian admixture Sudanese people have

Atlas
02-19-2021, 02:18 PM
I served some Sudanese people and The ladies phenotype was almost Spanish she looked a lot more Arab then me, what’s the highest amount of Arabian admixture Sudanese people have

I'd be interested in finding this out, too, going back and forth from reading that Sudanese Arabs and Nubians have experienced multiple admixture events to the conclusion that they are ancestrally similar in various ways to their ancient counterparts anyway. Although, I'm not sure phenotype is a great measure, though it is a tempting first option that many people default to- I know some individiduals who are majority (55-60+%) SSA but who can be and do get mistaken for various European and MENA ethnicities. It also happens the other way around as well, and the BBC did an article which mentioned Neguinho da Beija-Flor as a great example of this:
http://news.bbc.co.uk/1/hi/6284806.stm

Justnotyou
02-19-2021, 03:25 PM
From what I read B-group is just an impoverished form of A-group culture.Don't know how you came to the conclusion that it was Eastern Sudanic.The A-group were most likely Cushitic speakers as some of the chiefdom names like Wawat or Irtet seem to be cushitic origin.The A-group were culturally distinct from the Naqada Egyptians so no they weren't some proto-Upper Egyptians.The A-group and some of the C-group were probably linguistically related to the Medjay (Beja ancestors) and represent a group of related languages that diverged early from the rest of the Cushitic family.

Lower Nubia during the C-group era was probably mixed.The A-group represented the Cushitic locals,there was nearby cushitic nomads (medjay) to east with a small population also living in the Libyan desert and the arrival of Eastern Sudanic speakers who scattered from Wadi Howar toward Lower Nubia which is why the C-group culture extended further south than the A-group.This is probably when the linguistic shift to Sudanic languages happened and why the later Kerma culture also spoke a Sudanic language.

In Lower Nubia's case during the c-group period, I think the vast majority maintained their cushitic intermediate profile while living alongside the more sub-saharan Sudanic migrants.Which is why throughout Nubian history there were very different depictions of the Nubians by the Egyptians as it was an ethnically heterogenous region

The B-group culture were essentially the A-group but with alot of new kingdom Egyptian influences like early writing, maybe some cultural influences as well such as circumcision.

There are enough scholars who do agree that the A group & B group were eastern Sudanic, I didn't mean they were proto-upper Egyptians just that genetically they'd cluster quite intriguingly close to the old kingdom upper Egyptians especially when they were under the new kingdom Egyptians.

Cushitic markers were noted with the emerging pan grave culture, can you site any authoritative sources that conclude the names prove sufficient to cluster the A & B groups with the Cushitic C-group. The A group are distinct from the C-group, there are no sources to back up your implications that they were the same people.

The C-group is the pan grave culture/Medjay, do not use the extent of each group to prove a point even the new kingdom Egyptians extended their influence further south more than the old kingdom Egyptians to areas more Sub-Saharan without needing to be more themselves political influences don't really depend on genetica alignment, A-group kushites emerged first but persevered for a long time, the kush empire emerged while both the B-group & C-group were present already, the A-group was made up of the independent ancient pre-kingdom Kerma who were rivals with the dynastic middle Egyptian kingdom & flourished in the second intermediate period, while the B-group & C-group/Medjay were under the New kingdom Egyptians, the medjay even made up a chunk of the police in New kingdom Egypt & later both the B & C groups formed the kush empire. there would be no need to distinguish the groups if they all were cushitic groups since they were prominent in almost the exact same period except the A-group who emerged earlier...

The first depictions of these early Nubians was undoubtedly more eastern Sudanic & the second depictions were of the viceroys of Kush, mixed Egyptians & Nubians. Then more depictions come later that reflect on the change I noted with the involvement of the medjay...

drobbah
02-19-2021, 03:30 PM
Never said the A group and C-group are the same people bud.I clearly said the A-group in Lower Nubia were Cushitic/Afro-Asiatic while the C-group were amalgamation of people including the previous A-group inhabitants who switched over to Sudanic languages due to an influx of Sudanic speakers who dispersed from Upper Nubia.There are many sources that show Lower Nubia was always in the Afro-Asiatic realm including lexical borrowings from a Cushitic language in the modern Nubian language which they received via another early sudanic language which had a long presence in Lower Nubia

Justnotyou
02-19-2021, 04:33 PM
Never said the A group and C-group are the same people bud.I clearly said the A-group in Lower Nubia were Cushitic/Afro-Asiatic while the C-group were amalgamation of people including the previous A-group inhabitants who switched over to Sudanic languages due to an influx of Sudanic speakers who dispersed from Upper Nubia.There are many sources that show Lower Nubia was always in the Afro-Asiatic realm including lexical borrowings from a Cushitic language in the modern Nubian language which they received via another early sudanic language which had a long presence in Lower Nubia

Modern Nubian languages are quite diverse but some definitely have links to the extinct old Nubian used around 400 CE but I'm sure every linguist will agree it still isnt enough to be used as an authoritative source to understanding the languages from 5000 years ago like the A-groups, it would however be more useful to attest to the relatively recent C-group/beja Cushites that they interacted with.

Kush was the amalgamation, the C-group culture is only relative to the medjay, those sources use the viceroys of Kush influenced B-group culture who were mixed with Egyptians & they wrote using an extinct ancient Egyptian language, definitely Afro-Asiatic.

Interesting so upper Nubians brought the eastern Sudanic language shift during the C-group culture? if you can give me just one source that collaborate with your assertions that the C-group was in fact influenced by these eastern Sudanic groups then I'll gladly accept, it makes sense but history has the C-group emerging from the red sea/east coastal Sudan/Beja territory into lower Nubia but I could be misinterpreting your excerpt.

Are we using the same time lines or even talking about the same groups? Is the debate on the C-group culture emerging or maybe Meroitic Kush emerging? fall of Kush? Christian Kush? If you're discussing any of the other groups except the C-group then yes eastern Sudanic upper Nubians made their way north.

drobbah
02-19-2021, 04:43 PM
Modern Nubian languages are quite diverse but some definitely have links to the extinct old Nubian used around 400 CE but I'm sure every linguist will agree it still isnt enough to be used as an authoritative source to understanding the languages from 5000 years ago like the A-groups, it would however be more useful to attest to the relatively recent C-group/beja Cushites that they interacted with.

Kush was the amalgamation, the C-group culture is only relative to the medjay, those sources use the viceroys of Kush influenced B-group culture who were mixed with Egyptians & they wrote using an extinct ancient Egyptian language, definitely Afro-Asiatic.

Interesting so upper Nubians brought the eastern Sudanic language shift during the C-group culture? if you can give me just one source that collaborate with your assertions that the C-group was in fact influenced by these eastern Sudanic groups then I'll gladly accept, it makes sense but history has the C-group emerging from the red sea/east coastal Sudan/Beja territory into lower Nubia but I could be misinterpreting your excerpt.

Are we using the same time lines or even talking about the same groups? Is the debate on the C-group culture emerging or maybe Meroitic Kush emerging? fall of Kush? Christian Kush? If you're discussing any of the other groups except the C-group then yes eastern Sudanic upper Nubians made their way north.
I think you are confusing the pan-grave culture which is medjay (cousins or ancestors of the Beja) and C-group culture.They are two distinct but related cultures

Justnotyou
02-19-2021, 05:36 PM
I think you are confusing the pan-grave culture which is medjay (cousins or ancestors of the Beja) and C-group culture.They are two distinct but related cultures

Really, & what defines the C-group culture?

drobbah
02-19-2021, 10:15 PM
It's interesting that the Nubian T-Y31477 falls under an "Arabian branch" just like the Somali T variant does as well.I think if more Horners,Sudanese,SE Africans and ancient African T samples come through, they would likely show that T primarily arrived via NE Africa into the Horn and not directly from the Arabian Peninsula.

I hope once the samples get released they can upload them on yfull

NetNomad
02-19-2021, 10:44 PM
Well the natufians are early Levantine farmers so I don’t understand your comment. At there time they was the most advanced civilisation so I don’t know what there is to laugh about.

They are the closest to the Natufians of all modern people, that's all.

Keneki20
02-19-2021, 11:28 PM
Well the natufians are early Levantine farmers so I don’t understand your comment. At there time they was the most advanced civilisation so I don’t know what there is to laugh about.

Natufians are often portrayed as early farmers, but that’s a bit of a mischaracterization. Overall, they are best characterized as semi-sedentary hunter-gatherers who varyingly participated in the incipient cultivation of wild cereals. So, essentially proto-agricultural, but not farming in the traditional sense.

Moderator
02-20-2021, 01:27 AM
Terms of Service: (3.12) Discussions pertaining to physical appearance and/or phenotype that are quantitative and accompanied with structured analysis are generally welcome in Anthrogenica. However, subjective and arbitrary discussions relating to either subject that are agreed by our administration to breach section 3.11 above are generally prohibited. What constitutes as the aforementioned, and whether further action is required outside of content modification, will be carried out at the administration's discretion.


- Admin team

Angoliga
02-22-2021, 12:17 AM
... I wonder where Cushitic related groups picked it up?

Perhaps groups like the Gumuz and Kunama were more prevalent in the Ethiopian highlands? Both groups are rich in A-M13 and we know that the Gumuz have an ancient presence in the region since they have significant Mota-related ancestry with only minor Omotic or Cushitic admixture.

I've been wondering the same -- seeing moderate frequencies among north-highlanders/Ethio-Semitic speakers (Tigrinya, Beta-Israel ..) is quite perplexing, especially when glancing at *some of their TMRCA (https://www.yfull.com/tree/A-Y23655/)s with peninsular Arabs (Saudi/Yemeni/Kuwati) -- some appear to overlap Semitic expansion (~<10th century BC) but wouldn't forcibly need to be the only explanation

At the same time, >moderate A-M13 detection in some of these Semitic speakers doesn't seem to correlate well with the aggressive nature of PN expansion, let alone the added layer of Semitic expansion - what are your thoughts?

The D’Atanasio et al green-sahara paper (https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1393-5#MOESM1)showed a strict A-M13 bifurcation between Horners (TMRCA ~8.43kybp) and a more geographically wide-spread clade among Sahelian/NW-African/Mediterranean/Great-Lake pops (TMRCA ~10.24kybp ) -- unfortunately Horner A-M13 were limited within the dataset (*Beta-Israel over-represented), and Gumuz weren't included for us to make any probable conclusions:

https://i.imgur.com/hvwK4In.png


With more regional modern/ancient resolution (Horn/South-Arabia), it'll be interesting to see how skewed of a mixed-bag we get for minor A (& B ) yDNA in Cushitic related-groups derived from :

a) back-migrating SW-Asian lineages from minor Ancestral-East African contribution (dating from the Arabian holocene humid period <10kybp)
b) direct contact from adjacent Nilo-Saharan speakers (Nara, Kunama, Gumuz..)
c) in-situ Ancestral-East African lineages which were sequestered to East-Africa as a corollary to the afmd A-M13 bifurcation (some paleohydrologic considerations here (https://anthrogenica.com/showthread.php?19046-Blame-it-on-the-Rain-Paleohydrologic-considerations-for-Shaping-African-Substructure&p=624750&viewfull=1#post624750)). As you've mentioned, Gumuz might be a good candidate for further investigation, especially given that they're linguistically considered an isolate within the NS-family... they might have more chance of showing pre-PN Ethiopian-highland type yDNA

Samuel7312
02-22-2021, 11:38 PM
So is it possible to use these samples in global25?

ThaYamamoto
02-23-2021, 12:09 AM
So is it possible to use these samples in global25?

Hopefully they should be yeah, they should be with us soon.

Samuel7312
03-02-2021, 10:45 PM
any luck anyone with getting these sent to david?????

drobbah
03-25-2021, 08:46 PM
What's your take on E-V12>CTS693? Is it an ancient presence among Nubians and other East Africans or more recent (sample relative) Egyptian ancestry?
The only V12 lineage that exists so far in Horners is E-V32, tbh haven't seen non-V32 V12 subclades amongst the Cushitic Sudanese Beja either.Maybe it's an indigenous lineage to the Nile Valley (Nubia & Egypt) and not the Eastern Desert/Red Sea hills.

beyoku
03-27-2021, 12:16 AM
^Check out the E-V12 in the Hirbo thesis.

drobbah
03-28-2021, 04:36 PM
^Check out the E-V12 in the Hirbo thesis.
Won't be of much help considering they didn't split up E-V12 besides between V32,V12* and E-M224.The only groups in that thesis that carried V12*+ were the Yaaku,Aweer,Iraqw & the Baggara Arabs of Sudan.Perhaps V12 subclades that weren't E-V32 arrived with the Proto-Cushitic tribes but just weren't successful in the Horn but managed to survive in East Africa (Kenya & Tanzania).

Mirix
05-13-2021, 01:31 AM
The results aren't suprising a lot of this was known already, it just confirms things even more and i said as much in a different thread: When did Nubia become Nubian? (https://anthrogenica.com/showthread.php?10644-When-did-Nubia-become-Nubian&p=711231#post711231)


If that is the case then there should be a demonstrateable discontinuity for which there isn't. Aside from the noticeable mixture with Arabs there hasn't be any radical population change or replacement.


Then there is also 2015 study where they sucessfully extract endogenous DNA from specimens from the early Christian Period when the Alodia/Alwah, Nobatia and Makuria kingdoms ruled. They found out the specimens ancestry was West-Euroasian. Which shows that the Coptic/Ethio-Somali ancestral component that defines modern Nubians is most likely the same West Eurasian-affiliated ancestral component that defines the KulR17 specimen from Kulubnarti.

blackflash16
09-01-2021, 07:04 PM
There's a preprint for a paper with samples from Roman sites in modern-day Serbia dated to ~1st century CE. One of the individuals may have been a Nubian Legionnaire or Auxilliary. Interestingly, his uniparentals are reported as E-V32 and L2a1j. I don't think that mtDNA has ever been found in Nile populations but has been mostly detected in Somalia and a couple of samples in Saudi Arabia and Jordan.

In the pre-print, they ran qpAdm with the following populations:


West_Africa_ancient, Sudan_EarlyChristian, Tianyuan, EHG, Iron_Gates_HG, Levant_N, Anatolia_N, Iran_N, Yamnaya_Samara, Alalakh_MLBA, Iberia_IA, Mycenaean, Slovenia_EIA, Netherlands_IA, Russia_Ingria_IA, Steppe_IA

and the only model that worked was a one-way model with Sudan_EarlyChristian, but it wasn't a great fit (p=~0.13), but that makes sense as this roman sample is ~600+ years older than those at Kulubnarti, who already showed recent signs of admixture.

PCA:


https://i.imgur.com/sWmeoAR.png

Source: BioXiv (pre-print + suppl. material) (https://www.biorxiv.org/content/10.1101/2021.08.30.458211v1.supplementary-material).

Sranançao
11-27-2021, 01:31 AM
I found a paper looking at the biological affinities of Nubians that is pretty interesting especially if the results can ever be confirmed by aDNA. They find that there is discontinuity between late pleistocene lower Nubians and holocene lower Nubians. This has been an observation for years. And the change has been suggested as either gene flow, population replacement or local evolution. This study suggests there was continuity in Nubia but with late pleistocene upper Nubians at Al Khiday

In sum, the most parsimonious explanation is ancestors of Holocene agriculturalists were in Nubia—just not at Wadi Halfa, Gebel Sahaba, and Tushka. Though cultural diffusion with incorporation of non-local resources occurred [70-71], with perhaps some immigration, it is unnecessary to hypothesize a significant post-Pleistocene influx of agriculturalists. The results suggest most future Nubian agriculturalists were in residence the entire time, though previously in the guise of Neolithic agro-pastoralists and intensive collectors. It would seem likely that, soil deflation aside, more Late Palaeolithic skeletal remains akin to Al Khiday may yet be discovered, possibly including Lower Nubia. So, long term population continuity appears likely after all, perhaps including in situ selection for reduction in cranial robusticity, as well as dental size (only), during the transition from hunting-gathering to agriculture.
https://royalsocietypublishing.org/doi/abs/10.1098/rspb.2021.0969

Another interesting observation is that Jebel Sahaba shows the highest affinity to Sub Saharan African populations in particular West Africans. To me suggesting these Lower Nubians might be ancestral to current day West Africans.

Chad Rohlfsen
11-27-2021, 02:55 AM
Is there data available from this yet?

Mnemonics
11-27-2021, 04:03 AM
Is there data available from this yet?

The BAM files have been released but we are waiting for someone to convert them.

lifeisdandy
11-27-2021, 04:22 AM
Any g25 coordinates for nubians?

altvred
11-27-2021, 09:03 AM
The BAM files have been released but we are waiting for someone to convert them.
Here they are in BED and Ancestrymap format.

Plink (https://drive.google.com/file/d/1k8nFSCs8HMIeCpDoAAeaC3tUB5MEzHeL/view?usp=sharing)
Geno (https://drive.google.com/file/d/1ZpYtn77-Yq40vJL5J41R2tuvU8l2rian/view?usp=sharing)

I've already emailed them to Davidski.

Michalis Moriopoulos
11-27-2021, 10:57 AM
Here they are in BED and Ancestrymap format.

Plink (https://drive.google.com/file/d/1k8nFSCs8HMIeCpDoAAeaC3tUB5MEzHeL/view?usp=sharing)
Geno (https://drive.google.com/file/d/1ZpYtn77-Yq40vJL5J41R2tuvU8l2rian/view?usp=sharing)

I've already emailed them to Davidski.

Have you considered looking at the 2017 Hollfelder Northeast African genomes?

Sudan.tar.gz in the link below:
http://jakobssonlab.iob.uu.se/data/

My understanding is that there was too low of a SNP overlap for these to be included in the G25 a few years ago when they were first released-- could that have been a processing problem? At 3.9 million SNP coverage you'd think they'd be good to go. The Nubians from it are even included on the PCA in the new Kulubnarti study. It's a big hole in the G25 not to have these great samples so is there some magic you can work perhaps?

Mnemonics
11-27-2021, 11:11 AM
Here they are in BED and Ancestrymap format.

Plink (https://drive.google.com/file/d/1k8nFSCs8HMIeCpDoAAeaC3tUB5MEzHeL/view?usp=sharing)
Geno (https://drive.google.com/file/d/1ZpYtn77-Yq40vJL5J41R2tuvU8l2rian/view?usp=sharing)

I've already emailed them to Davidski.

Thanks!

Most of their SSA seems to be Dinka-like but they seem to need some extra Mota affinity which is interesting. The Egyptians seem fine as a source for their MENA ancestry when you don't add Iberomaurusians to the right pops list





left pops:
Kulubnarti_MA
Dinka.DG
EgyptianAnc

right pops:
Cameroon_SMA.SG
Anatolia_N.SG
Iran_TepeAbdulHosein_N.SG
CHG
Mota
DevilsGate_N
Iberia_HG
Lebanon_MBA.SG
Russia_Afanasievo.SG
Rome_Imperial
Greece_Logkas_MBA.SG

0 Kulubnarti_MA 60
1 Dinka.DG 3
2 EgyptianAnc 4
3 Cameroon_SMA.SG 2
4 Anatolia_N.SG 5
5 Iran_TepeAbdulHosein_N.SG 3
6 CHG 2
7 Mota 1
8 DevilsGate_N 4
9 Iberia_HG 2
10 Lebanon_MBA.SG 5
11 Russia_Afanasievo.SG 2
12 Rome_Imperial 43
13 Greece_Logkas_MBA.SG 2
jackknife block size: 0.050
snps: 1150518 indivs: 138
number of blocks for block jackknife: 714
## ncols: 1150518
coverage: Kulubnarti_MA 1111256
coverage: Dinka.DG 1150400
coverage: EgyptianAnc 816220
coverage: Cameroon_SMA.SG 1148760
coverage: Anatolia_N.SG 1056084
coverage: Iran_TepeAbdulHosein_N.SG 1061032
coverage: CHG 1134595
coverage: Mota 1134612
coverage: DevilsGate_N 1134715
coverage: Iberia_HG 1042845
coverage: Lebanon_MBA.SG 1138714
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Greece_Logkas_MBA.SG 1149733
Effective number of blocks: 632.705
numsnps used: 745497
codimension 1
f4info:
f4rank: 1 dof: 9 chisq: 10.432 tail: 0.316684155 dofdiff: 11 chisqdiff: -10.432 taildiff: 1
B:
scale 1.000
Anatolia_N.SG 1.153
Iran_TepeAbdulHosein_N.SG 0.977
CHG 1.038
Mota 0.093
DevilsGate_N 0.830
Iberia_HG 1.030
Lebanon_MBA.SG 1.121
Russia_Afanasievo.SG 1.053
Rome_Imperial 1.123
Greece_Logkas_MBA.SG 1.121
A:
scale 65.112
Dinka.DG -1.175
EgyptianAnc 0.788


full rank
f4info:
f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 10.432 taildiff: 0.316684155
B:
scale 54.811 82.226
Anatolia_N.SG -1.151 1.147
Iran_TepeAbdulHosein_N.SG -0.975 0.995
CHG -1.036 1.059
Mota -0.112 0.079
DevilsGate_N -0.835 0.833
Iberia_HG -1.033 1.019
Lebanon_MBA.SG -1.118 1.118
Russia_Afanasievo.SG -1.057 1.046
Rome_Imperial -1.120 1.116
Greece_Logkas_MBA.SG -1.119 1.116
A:
scale 1.414 1.414
Dinka.DG 1.414 0.000
EgyptianAnc 0.000 1.414


best coefficients: 0.401 0.599
Jackknife mean: 0.401368881 0.598631119
std. errors: 0.004 0.004

error covariance (* 1,000,000)
20 -20
-20 20


summ: Kulubnarti_MA 2 0.316684 0.401 0.599 20 -20 20

fixed pat wt dof chisq tail prob
00 0 9 10.432 0.316684 0.401 0.599
01 1 10 7920.073 0 1.000 0.000
10 1 10 3354.608 0 0.000 1.000
best pat: 00 0.316684 - -
best pat: 01 0 chi(nested): 7909.641 p-value for nested model: 0

coeffs: 0.401 0.599

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Dinka.DG Anatolia_N.SG -0.021007 -77.015740
details: EgyptianAnc Anatolia_N.SG 0.013953 46.904095
dscore: Anatolia_N.SG f4: -0.000079 Z: -0.403438

details: Dinka.DG Iran_TepeAbdulHosein_N.SG -0.017783 -65.618377
details: EgyptianAnc Iran_TepeAbdulHosein_N.SG 0.012098 42.162627
dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000105 Z: 0.560877

details: Dinka.DG CHG -0.018899 -66.734818
details: EgyptianAnc CHG 0.012873 41.406740
dscore: CHG f4: 0.000121 Z: 0.609781

details: Dinka.DG Mota -0.002052 -9.536272
details: EgyptianAnc Mota 0.000956 4.107228
dscore: Mota f4: -0.000251 Z: -1.546190

details: Dinka.DG DevilsGate_N -0.015236 -55.411509
details: EgyptianAnc DevilsGate_N 0.010136 35.010382
dscore: DevilsGate_N f4: -0.000048 Z: -0.252177

details: Dinka.DG Iberia_HG -0.018842 -66.909529
details: EgyptianAnc Iberia_HG 0.012395 41.373918
dscore: Iberia_HG f4: -0.000143 Z: -0.724356

details: Dinka.DG Lebanon_MBA.SG -0.020403 -79.447092
details: EgyptianAnc Lebanon_MBA.SG 0.013591 49.736151
dscore: Lebanon_MBA.SG f4: -0.000053 Z: -0.306480

details: Dinka.DG Russia_Afanasievo.SG -0.019289 -69.877523
details: EgyptianAnc Russia_Afanasievo.SG 0.012723 43.454202
dscore: Russia_Afanasievo.SG f4: -0.000125 Z: -0.665457

details: Dinka.DG Rome_Imperial -0.020429 -83.934731
details: EgyptianAnc Rome_Imperial 0.013572 55.484904
dscore: Rome_Imperial f4: -0.000075 Z: -0.473547

details: Dinka.DG Greece_Logkas_MBA.SG -0.020415 -75.881701
details: EgyptianAnc Greece_Logkas_MBA.SG 0.013572 45.942596
dscore: Greece_Logkas_MBA.SG f4: -0.000070 Z: -0.359041

gendstat: Cameroon_SMA.SG Anatolia_N.SG -0.403
gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.561
gendstat: Cameroon_SMA.SG CHG 0.610
gendstat: Cameroon_SMA.SG Mota -1.546
gendstat: Cameroon_SMA.SG DevilsGate_N -0.252
gendstat: Cameroon_SMA.SG Iberia_HG -0.724
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG -0.306
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG -0.665
gendstat: Cameroon_SMA.SG Rome_Imperial -0.474
gendstat: Cameroon_SMA.SG Greece_Logkas_MBA.SG -0.359
gendstat: Anatolia_N.SG Iran_TepeAbdulHosein_N.SG 1.159
gendstat: Anatolia_N.SG CHG 1.298
gendstat: Anatolia_N.SG Mota -0.811
gendstat: Anatolia_N.SG DevilsGate_N 0.183
gendstat: Anatolia_N.SG Iberia_HG -0.382
gendstat: Anatolia_N.SG Lebanon_MBA.SG 0.195
gendstat: Anatolia_N.SG Russia_Afanasievo.SG -0.301
gendstat: Anatolia_N.SG Rome_Imperial 0.036
gendstat: Anatolia_N.SG Greece_Logkas_MBA.SG 0.065
gendstat: Iran_TepeAbdulHosein_N.SG CHG 0.098
gendstat: Iran_TepeAbdulHosein_N.SG Mota -1.782
gendstat: Iran_TepeAbdulHosein_N.SG DevilsGate_N -0.908
gendstat: Iran_TepeAbdulHosein_N.SG Iberia_HG -1.394
gendstat: Iran_TepeAbdulHosein_N.SG Lebanon_MBA.SG -1.115
gendstat: Iran_TepeAbdulHosein_N.SG Russia_Afanasievo.SG -1.496
gendstat: Iran_TepeAbdulHosein_N.SG Rome_Imperial -1.459
gendstat: Iran_TepeAbdulHosein_N.SG Greece_Logkas_MBA.SG -1.056
gendstat: CHG Mota -1.779
gendstat: CHG DevilsGate_N -0.937
gendstat: CHG Iberia_HG -1.483
gendstat: CHG Lebanon_MBA.SG -1.173
gendstat: CHG Russia_Afanasievo.SG -1.502
gendstat: CHG Rome_Imperial -1.551
gendstat: CHG Greece_Logkas_MBA.SG -1.135
gendstat: Mota DevilsGate_N 0.976
gendstat: Mota Iberia_HG 0.505
gendstat: Mota Lebanon_MBA.SG 1.019
gendstat: Mota Russia_Afanasievo.SG 0.607
gendstat: Mota Rome_Imperial 0.977
gendstat: Mota Greece_Logkas_MBA.SG 0.855
gendstat: DevilsGate_N Iberia_HG -0.535
gendstat: DevilsGate_N Lebanon_MBA.SG -0.035
gendstat: DevilsGate_N Russia_Afanasievo.SG -0.457
gendstat: DevilsGate_N Rome_Imperial -0.192
gendstat: DevilsGate_N Greece_Logkas_MBA.SG -0.125
gendstat: Iberia_HG Lebanon_MBA.SG 0.559
gendstat: Iberia_HG Russia_Afanasievo.SG 0.101
gendstat: Iberia_HG Rome_Imperial 0.502
gendstat: Iberia_HG Greece_Logkas_MBA.SG 0.432
gendstat: Lebanon_MBA.SG Russia_Afanasievo.SG -0.494
gendstat: Lebanon_MBA.SG Rome_Imperial -0.246
gendstat: Lebanon_MBA.SG Greece_Logkas_MBA.SG -0.117
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.416
gendstat: Russia_Afanasievo.SG Greece_Logkas_MBA.SG 0.355
gendstat: Rome_Imperial Greece_Logkas_MBA.SG 0.050






Popping Iberomaurusians into the right pop list creates a strong need for Iberomaurusian related ancestry without a need for less CHG/Iran_N ancestry and a need for more Anatolia_N which I think might indicate admixture from a pristinely Iberomaurusian like source.








left pops:
Kulubnarti_MA
Dinka.DG
EgyptianAnc

right pops:
Cameroon_SMA.SG
Anatolia_N.SG
Iran_TepeAbdulHosein_N.SG
CHG
Mota
DevilsGate_N
Iberia_HG
Lebanon_MBA.SG
Russia_Afanasievo.SG
Rome_Imperial
Greece_Logkas_MBA.SG
Iberomaurusian

0 Kulubnarti_MA 60
1 Dinka.DG 3
2 EgyptianAnc 4
3 Cameroon_SMA.SG 2
4 Anatolia_N.SG 5
5 Iran_TepeAbdulHosein_N.SG 3
6 CHG 2
7 Mota 1
8 DevilsGate_N 4
9 Iberia_HG 2
10 Lebanon_MBA.SG 5
11 Russia_Afanasievo.SG 2
12 Rome_Imperial 43
13 Greece_Logkas_MBA.SG 2
14 Iberomaurusian 4
jackknife block size: 0.050
snps: 1150523 indivs: 142
number of blocks for block jackknife: 714
## ncols: 1150523
coverage: Kulubnarti_MA 1111256
coverage: Dinka.DG 1150400
coverage: EgyptianAnc 816220
coverage: Cameroon_SMA.SG 1148760
coverage: Anatolia_N.SG 1056084
coverage: Iran_TepeAbdulHosein_N.SG 1061032
coverage: CHG 1134595
coverage: Mota 1134612
coverage: DevilsGate_N 1134715
coverage: Iberia_HG 1042845
coverage: Lebanon_MBA.SG 1138714
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Greece_Logkas_MBA.SG 1149733
coverage: Iberomaurusian 1086672
Effective number of blocks: 632.830
numsnps used: 737799
codimension 1
f4info:
f4rank: 1 dof: 10 chisq: 81.342 tail: 2.73852251e-13 dofdiff: 12 chisqdiff: -81.342 taildiff: 1
B:
scale 1.000
Anatolia_N.SG 1.177
Iran_TepeAbdulHosein_N.SG 0.997
CHG 1.058
Mota 0.094
DevilsGate_N 0.851
Iberia_HG 1.052
Lebanon_MBA.SG 1.142
Russia_Afanasievo.SG 1.075
Rome_Imperial 1.145
Greece_Logkas_MBA.SG 1.141
Iberomaurusian 0.767
A:
scale 66.299
Dinka.DG -1.177
EgyptianAnc 0.783


full rank
f4info:
f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 81.342 taildiff: 2.73852251e-13
B:
scale 55.601 84.359
Anatolia_N.SG -1.172 1.182
Iran_TepeAbdulHosein_N.SG -0.991 1.023
CHG -1.054 1.088
Mota -0.115 0.082
DevilsGate_N -0.851 0.858
Iberia_HG -1.051 1.049
Lebanon_MBA.SG -1.138 1.151
Russia_Afanasievo.SG -1.076 1.075
Rome_Imperial -1.140 1.148
Greece_Logkas_MBA.SG -1.139 1.147
Iberomaurusian -0.800 0.644
A:
scale 1.414 1.414
Dinka.DG 1.414 0.000
EgyptianAnc 0.000 1.414


best coefficients: 0.400 0.600
Jackknife mean: 0.399489578 0.600510422
std. errors: 0.005 0.005

error covariance (* 1,000,000)
20 -20
-20 20


summ: Kulubnarti_MA 2 0.000000 0.399 0.601 20 -20 20

fixed pat wt dof chisq tail prob
00 0 10 81.342 2.73852e-13 0.400 0.600
01 1 11 7945.842 0 1.000 0.000
10 1 11 3353.653 0 0.000 1.000
best pat: 00 2.73852e-13 - -
best pat: 01 0 chi(nested): 7864.500 p-value for nested model: 0

coeffs: 0.400 0.600

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Dinka.DG Anatolia_N.SG -0.021073 -77.249799
details: EgyptianAnc Anatolia_N.SG 0.014009 46.914437
dscore: Anatolia_N.SG f4: -0.000007 Z: -0.035732

details: Dinka.DG Iran_TepeAbdulHosein_N.SG -0.017832 -65.892606
details: EgyptianAnc Iran_TepeAbdulHosein_N.SG 0.012130 42.007489
dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000159 Z: 0.849611

details: Dinka.DG CHG -0.018965 -67.126077
details: EgyptianAnc CHG 0.012903 41.291537
dscore: CHG f4: 0.000171 Z: 0.862709

details: Dinka.DG Mota -0.002073 -9.650261
details: EgyptianAnc Mota 0.000970 4.156128
dscore: Mota f4: -0.000246 Z: -1.516967

details: Dinka.DG DevilsGate_N -0.015310 -55.579881
details: EgyptianAnc DevilsGate_N 0.010166 34.835130
dscore: DevilsGate_N f4: -0.000012 Z: -0.065473

details: Dinka.DG Iberia_HG -0.018907 -67.162355
details: EgyptianAnc Iberia_HG 0.012431 41.362080
dscore: Iberia_HG f4: -0.000089 Z: -0.450542

details: Dinka.DG Lebanon_MBA.SG -0.020468 -79.635738
details: EgyptianAnc Lebanon_MBA.SG 0.013646 49.749883
dscore: Lebanon_MBA.SG f4: 0.000017 Z: 0.094547

details: Dinka.DG Russia_Afanasievo.SG -0.019346 -70.029090
details: EgyptianAnc Russia_Afanasievo.SG 0.012744 43.242256
dscore: Russia_Afanasievo.SG f4: -0.000077 Z: -0.404412

details: Dinka.DG Rome_Imperial -0.020496 -84.219793
details: EgyptianAnc Rome_Imperial 0.013608 55.284887
dscore: Rome_Imperial f4: -0.000017 Z: -0.107284

details: Dinka.DG Greece_Logkas_MBA.SG -0.020494 -76.031557
details: EgyptianAnc Greece_Logkas_MBA.SG 0.013600 45.802017
dscore: Greece_Logkas_MBA.SG f4: -0.000021 Z: -0.109041

details: Dinka.DG Iberomaurusian -0.014388 -58.696005
details: EgyptianAnc Iberomaurusian 0.007634 28.390996
dscore: Iberomaurusian f4: -0.001164 Z: -6.675463

gendstat: Cameroon_SMA.SG Anatolia_N.SG -0.036
gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.850
gendstat: Cameroon_SMA.SG CHG 0.863
gendstat: Cameroon_SMA.SG Mota -1.517
gendstat: Cameroon_SMA.SG DevilsGate_N -0.065
gendstat: Cameroon_SMA.SG Iberia_HG -0.451
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG 0.095
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG -0.404
gendstat: Cameroon_SMA.SG Rome_Imperial -0.107
gendstat: Cameroon_SMA.SG Greece_Logkas_MBA.SG -0.109
gendstat: Cameroon_SMA.SG Iberomaurusian -6.675
gendstat: Anatolia_N.SG Iran_TepeAbdulHosein_N.SG 1.049
gendstat: Anatolia_N.SG CHG 1.150
gendstat: Anatolia_N.SG Mota -1.126
gendstat: Anatolia_N.SG DevilsGate_N -0.032
gendstat: Anatolia_N.SG Iberia_HG -0.488
gendstat: Anatolia_N.SG Lebanon_MBA.SG 0.179
gendstat: Anatolia_N.SG Russia_Afanasievo.SG -0.449
gendstat: Anatolia_N.SG Rome_Imperial -0.097
gendstat: Anatolia_N.SG Greece_Logkas_MBA.SG -0.098
gendstat: Anatolia_N.SG Iberomaurusian -6.587
gendstat: Iran_TepeAbdulHosein_N.SG CHG 0.072
gendstat: Iran_TepeAbdulHosein_N.SG Mota -2.040
gendstat: Iran_TepeAbdulHosein_N.SG DevilsGate_N -1.027
gendstat: Iran_TepeAbdulHosein_N.SG Iberia_HG -1.389
gendstat: Iran_TepeAbdulHosein_N.SG Lebanon_MBA.SG -1.009
gendstat: Iran_TepeAbdulHosein_N.SG Russia_Afanasievo.SG -1.520
gendstat: Iran_TepeAbdulHosein_N.SG Rome_Imperial -1.432
gendstat: Iran_TepeAbdulHosein_N.SG Greece_Logkas_MBA.SG -1.094
gendstat: Iran_TepeAbdulHosein_N.SG Iberomaurusian -7.280
gendstat: CHG Mota -1.989
gendstat: CHG DevilsGate_N -1.019
gendstat: CHG Iberia_HG -1.458
gendstat: CHG Lebanon_MBA.SG -1.040
gendstat: CHG Russia_Afanasievo.SG -1.506
gendstat: CHG Rome_Imperial -1.484
gendstat: CHG Greece_Logkas_MBA.SG -1.146
gendstat: CHG Iberomaurusian -7.049
gendstat: Mota DevilsGate_N 1.119
gendstat: Mota Iberia_HG 0.731
gendstat: Mota Lebanon_MBA.SG 1.353
gendstat: Mota Russia_Afanasievo.SG 0.817
gendstat: Mota Rome_Imperial 1.272
gendstat: Mota Greece_Logkas_MBA.SG 1.057
gendstat: Mota Iberomaurusian -4.817
gendstat: DevilsGate_N Iberia_HG -0.428
gendstat: DevilsGate_N Lebanon_MBA.SG 0.178
gendstat: DevilsGate_N Russia_Afanasievo.SG -0.376
gendstat: DevilsGate_N Rome_Imperial -0.033
gendstat: DevilsGate_N Greece_Logkas_MBA.SG -0.050
gendstat: DevilsGate_N Iberomaurusian -6.168
gendstat: Iberia_HG Lebanon_MBA.SG 0.657
gendstat: Iberia_HG Russia_Afanasievo.SG 0.070
gendstat: Iberia_HG Rome_Imperial 0.531
gendstat: Iberia_HG Greece_Logkas_MBA.SG 0.398
gendstat: Iberia_HG Iberomaurusian -5.896
gendstat: Lebanon_MBA.SG Russia_Afanasievo.SG -0.640
gendstat: Lebanon_MBA.SG Rome_Imperial -0.380
gendstat: Lebanon_MBA.SG Greece_Logkas_MBA.SG -0.274
gendstat: Lebanon_MBA.SG Iberomaurusian -7.272
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.490
gendstat: Russia_Afanasievo.SG Greece_Logkas_MBA.SG 0.351
gendstat: Russia_Afanasievo.SG Iberomaurusian -5.863
gendstat: Rome_Imperial Greece_Logkas_MBA.SG -0.036
gendstat: Rome_Imperial Iberomaurusian -7.794
gendstat: Greece_Logkas_MBA.SG Iberomaurusian -6.205






I'll try out some more models.

Mnemonics
11-27-2021, 11:18 AM
The best model for the Kulubnarti Nubians seems to be Kenya_PastoralIA + Ancient Egyptians + Morocco_EN




left pops:
Kulubnarti_MA
Kenya_PastoralIA
EgyptianAnc
Morocco_EN

right pops:
Cameroon_SMA.SG
Anatolia_N.SG
Iran_TepeAbdulHosein_N.SG
CHG
Mota
DevilsGate_N
Iberia_HG
Lebanon_MBA.SG
Russia_Afanasievo.SG
Rome_Imperial
Greece_Logkas_MBA.SG
Iberomaurusian
PPNB

0 Kulubnarti_MA 60
1 Kenya_PastoralIA 4
2 EgyptianAnc 4
3 Morocco_EN 3
4 Cameroon_SMA.SG 2
5 Anatolia_N.SG 5
6 Iran_TepeAbdulHosein_N.SG 3
7 CHG 2
8 Mota 1
9 DevilsGate_N 4
10 Iberia_HG 2
11 Lebanon_MBA.SG 5
12 Russia_Afanasievo.SG 2
13 Rome_Imperial 43
14 Greece_Logkas_MBA.SG 2
15 Iberomaurusian 4
16 PPNB 12
jackknife block size: 0.050
snps: 1150438 indivs: 158
number of blocks for block jackknife: 714
## ncols: 1150438
coverage: Kulubnarti_MA 1111256
coverage: Kenya_PastoralIA 661264
coverage: EgyptianAnc 816220
coverage: Morocco_EN 653097
coverage: Cameroon_SMA.SG 1148760
coverage: Anatolia_N.SG 1056084
coverage: Iran_TepeAbdulHosein_N.SG 1061032
coverage: CHG 1134595
coverage: Mota 1134612
coverage: DevilsGate_N 1134715
coverage: Iberia_HG 1042845
coverage: Lebanon_MBA.SG 1138714
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Greece_Logkas_MBA.SG 1149733
coverage: Iberomaurusian 1086672
coverage: PPNB 862586
Effective number of blocks: 631.346
numsnps used: 329481
codimension 1
f4info:
f4rank: 2 dof: 10 chisq: 5.665 tail: 0.842612619 dofdiff: 12 chisqdiff: -5.665 taildiff: 1
B:
scale 1.000 1.000
Anatolia_N.SG 1.079 0.520
Iran_TepeAbdulHosein_N.SG 0.958 0.426
CHG 0.984 0.409
Mota 0.060 -0.169
DevilsGate_N 0.797 0.132
Iberia_HG 0.979 0.251
Lebanon_MBA.SG 1.080 0.422
Russia_Afanasievo.SG 1.004 0.421
Rome_Imperial 1.063 0.469
Greece_Logkas_MBA.SG 1.087 0.446
Iberomaurusian 1.287 -3.226
PPNB 1.100 0.300
A:
scale 131.755 251.842
Kenya_PastoralIA -1.078 -0.333
EgyptianAnc 1.248 0.482
Morocco_EN 0.528 -1.630


full rank
f4info:
f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 5.665 taildiff: 0.842612619
B:
scale 120.942 102.107 129.139
Anatolia_N.SG -1.136 1.169 0.142
Iran_TepeAbdulHosein_N.SG -1.029 1.028 0.145
CHG -1.035 1.056 0.184
Mota -0.027 0.050 0.191
DevilsGate_N -0.810 0.819 0.306
Iberia_HG -0.996 1.025 0.314
Lebanon_MBA.SG -1.125 1.148 0.214
Russia_Afanasievo.SG -1.078 1.061 0.176
Rome_Imperial -1.135 1.131 0.169
Greece_Logkas_MBA.SG -1.164 1.145 0.194
Iberomaurusian -0.762 0.632 3.383
PPNB -1.131 1.142 0.331
A:
scale 1.732 1.732 1.732
Kenya_PastoralIA 1.732 0.000 0.000
EgyptianAnc 0.000 1.732 0.000
Morocco_EN 0.000 0.000 1.732


best coefficients: 0.529 0.447 0.024
Jackknife mean: 0.529078945 0.446810636 0.024110419
std. errors: 0.010 0.009 0.006

error covariance (* 1,000,000)
101 -75 -25
-75 88 -13
-25 -13 38


summ: Kulubnarti_MA 3 0.842613 0.529 0.447 0.024 101 -75 -25 88 -13 ...
38

fixed pat wt dof chisq tail prob
000 0 10 5.665 0.842613 0.529 0.447 0.024
001 1 11 21.861 0.0254715 0.547 0.453 0.000
010 1 11 994.305 0 1.007 0.000 -0.007 infeasible
100 1 11 2080.762 0 0.000 0.897 0.103
011 2 12 996.278 0 1.000 0.000 0.000
101 2 12 2176.863 0 0.000 1.000 0.000
110 2 12 4461.711 0 0.000 0.000 1.000
best pat: 000 0.842613 - -
best pat: 010 0 chi(nested): 988.640 p-value for nested model: 5.29546e-217
best pat: 011 1.18269e-205 chi(nested): 1.973 p-value for nested model: 0.160093

coeffs: 0.529 0.447 0.024

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Kenya_PastoralIA Anatolia_N.SG -0.009396 -24.672121
details: EgyptianAnc Anatolia_N.SG 0.011450 37.376822
details: Morocco_EN Anatolia_N.SG 0.001098 2.945026
dscore: Anatolia_N.SG f4: 0.000172 Z: 0.681466

details: Kenya_PastoralIA Iran_TepeAbdulHosein_N.SG -0.008506 -22.232757
details: EgyptianAnc Iran_TepeAbdulHosein_N.SG 0.010065 31.998309
details: Morocco_EN Iran_TepeAbdulHosein_N.SG 0.001127 2.934722
dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000025 Z: 0.101072

details: Kenya_PastoralIA CHG -0.008558 -21.436979
details: EgyptianAnc CHG 0.010346 31.871745
details: Morocco_EN CHG 0.001427 3.526370
dscore: CHG f4: 0.000130 Z: 0.494550

details: Kenya_PastoralIA Mota -0.000224 -0.646928
details: EgyptianAnc Mota 0.000486 1.707858
details: Morocco_EN Mota 0.001481 4.013705
dscore: Mota f4: 0.000134 Z: 0.579764

details: Kenya_PastoralIA DevilsGate_N -0.006698 -18.129234
details: EgyptianAnc DevilsGate_N 0.008024 26.800489
details: Morocco_EN DevilsGate_N 0.002370 6.170634
dscore: DevilsGate_N f4: 0.000099 Z: 0.418936

details: Kenya_PastoralIA Iberia_HG -0.008232 -20.772962
details: EgyptianAnc Iberia_HG 0.010041 30.852812
details: Morocco_EN Iberia_HG 0.002433 6.108523
dscore: Iberia_HG f4: 0.000190 Z: 0.733412

details: Kenya_PastoralIA Lebanon_MBA.SG -0.009304 -26.211089
details: EgyptianAnc Lebanon_MBA.SG 0.011243 39.703007
details: Morocco_EN Lebanon_MBA.SG 0.001656 4.598007
dscore: Lebanon_MBA.SG f4: 0.000142 Z: 0.618402

details: Kenya_PastoralIA Russia_Afanasievo.SG -0.008912 -23.458832
details: EgyptianAnc Russia_Afanasievo.SG 0.010387 32.751570
details: Morocco_EN Russia_Afanasievo.SG 0.001361 3.394666
dscore: Russia_Afanasievo.SG f4: -0.000041 Z: -0.163827

details: Kenya_PastoralIA Rome_Imperial -0.009382 -28.457057
details: EgyptianAnc Rome_Imperial 0.011074 42.981981
details: Morocco_EN Rome_Imperial 0.001307 3.949103
dscore: Rome_Imperial f4: 0.000017 Z: 0.080232

details: Kenya_PastoralIA Greece_Logkas_MBA.SG -0.009622 -25.160298
details: EgyptianAnc Greece_Logkas_MBA.SG 0.011214 35.114942
details: Morocco_EN Greece_Logkas_MBA.SG 0.001501 3.822187
dscore: Greece_Logkas_MBA.SG f4: -0.000043 Z: -0.170034

details: Kenya_PastoralIA Iberomaurusian -0.006301 -17.556329
details: EgyptianAnc Iberomaurusian 0.006194 21.490592
details: Morocco_EN Iberomaurusian 0.026195 59.111918
dscore: Iberomaurusian f4: 0.000065 Z: 0.284975

details: Kenya_PastoralIA PPNB -0.009356 -24.434080
details: EgyptianAnc PPNB 0.011182 36.271284
details: Morocco_EN PPNB 0.002564 6.495625
dscore: PPNB f4: 0.000109 Z: 0.437978

gendstat: Cameroon_SMA.SG Anatolia_N.SG 0.681
gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.101
gendstat: Cameroon_SMA.SG CHG 0.495
gendstat: Cameroon_SMA.SG Mota 0.580
gendstat: Cameroon_SMA.SG DevilsGate_N 0.419
gendstat: Cameroon_SMA.SG Iberia_HG 0.733
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG 0.618
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG -0.164
gendstat: Cameroon_SMA.SG Rome_Imperial 0.080
gendstat: Cameroon_SMA.SG Greece_Logkas_MBA.SG -0.170
gendstat: Cameroon_SMA.SG Iberomaurusian 0.285
gendstat: Cameroon_SMA.SG PPNB 0.438
gendstat: Anatolia_N.SG Iran_TepeAbdulHosein_N.SG -0.705
gendstat: Anatolia_N.SG CHG -0.197
gendstat: Anatolia_N.SG Mota -0.140
gendstat: Anatolia_N.SG DevilsGate_N -0.345
gendstat: Anatolia_N.SG Iberia_HG 0.087
gendstat: Anatolia_N.SG Lebanon_MBA.SG -0.182
gendstat: Anatolia_N.SG Russia_Afanasievo.SG -1.088
gendstat: Anatolia_N.SG Rome_Imperial -1.118
gendstat: Anatolia_N.SG Greece_Logkas_MBA.SG -1.142
gendstat: Anatolia_N.SG Iberomaurusian -0.511
gendstat: Anatolia_N.SG PPNB -0.337
gendstat: Iran_TepeAbdulHosein_N.SG CHG 0.515
gendstat: Iran_TepeAbdulHosein_N.SG Mota 0.395
gendstat: Iran_TepeAbdulHosein_N.SG DevilsGate_N 0.354
gendstat: Iran_TepeAbdulHosein_N.SG Iberia_HG 0.747
gendstat: Iran_TepeAbdulHosein_N.SG Lebanon_MBA.SG 0.654
gendstat: Iran_TepeAbdulHosein_N.SG Russia_Afanasievo.SG -0.319
gendstat: Iran_TepeAbdulHosein_N.SG Rome_Imperial -0.051
gendstat: Iran_TepeAbdulHosein_N.SG Greece_Logkas_MBA.SG -0.333
gendstat: Iran_TepeAbdulHosein_N.SG Iberomaurusian 0.179
gendstat: Iran_TepeAbdulHosein_N.SG PPNB 0.410
gendstat: CHG Mota 0.016
gendstat: CHG DevilsGate_N -0.136
gendstat: CHG Iberia_HG 0.266
gendstat: CHG Lebanon_MBA.SG 0.062
gendstat: CHG Russia_Afanasievo.SG -0.844
gendstat: CHG Rome_Imperial -0.666
gendstat: CHG Greece_Logkas_MBA.SG -0.801
gendstat: CHG Iberomaurusian -0.282
gendstat: CHG PPNB -0.097
gendstat: Mota DevilsGate_N -0.130
gendstat: Mota Iberia_HG 0.199
gendstat: Mota Lebanon_MBA.SG 0.029
gendstat: Mota Russia_Afanasievo.SG -0.664
gendstat: Mota Rome_Imperial -0.496
gendstat: Mota Greece_Logkas_MBA.SG -0.635
gendstat: Mota Iberomaurusian -0.277
gendstat: Mota PPNB -0.095
gendstat: DevilsGate_N Iberia_HG 0.414
gendstat: DevilsGate_N Lebanon_MBA.SG 0.225
gendstat: DevilsGate_N Russia_Afanasievo.SG -0.661
gendstat: DevilsGate_N Rome_Imperial -0.487
gendstat: DevilsGate_N Greece_Logkas_MBA.SG -0.664
gendstat: DevilsGate_N Iberomaurusian -0.159
gendstat: DevilsGate_N PPNB 0.045
gendstat: Iberia_HG Lebanon_MBA.SG -0.249
gendstat: Iberia_HG Russia_Afanasievo.SG -1.078
gendstat: Iberia_HG Rome_Imperial -1.026
gendstat: Iberia_HG Greece_Logkas_MBA.SG -1.101
gendstat: Iberia_HG Iberomaurusian -0.565
gendstat: Iberia_HG PPNB -0.388
gendstat: Lebanon_MBA.SG Russia_Afanasievo.SG -1.034
gendstat: Lebanon_MBA.SG Rome_Imperial -1.131
gendstat: Lebanon_MBA.SG Greece_Logkas_MBA.SG -1.052
gendstat: Lebanon_MBA.SG Iberomaurusian -0.407
gendstat: Lebanon_MBA.SG PPNB -0.186
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.393
gendstat: Russia_Afanasievo.SG Greece_Logkas_MBA.SG -0.014
gendstat: Russia_Afanasievo.SG Iberomaurusian 0.490
gendstat: Russia_Afanasievo.SG PPNB 0.733
gendstat: Rome_Imperial Greece_Logkas_MBA.SG -0.408
gendstat: Rome_Imperial Iberomaurusian 0.275
gendstat: Rome_Imperial PPNB 0.658
gendstat: Greece_Logkas_MBA.SG Iberomaurusian 0.497
gendstat: Greece_Logkas_MBA.SG PPNB 0.763
gendstat: Iberomaurusian PPNB 0.212

altvred
11-27-2021, 03:55 PM
Have you considered looking at the 2017 Hollfelder Northeast African genomes?

Sudan.tar.gz in the link below:
http://jakobssonlab.iob.uu.se/data/

My understanding is that there was too low of a SNP overlap for these to be included in the G25 a few years ago when they were first released-- could that have been a processing problem? At 3.9 million SNP coverage you'd think they'd be good to go. The Nubians from it are even included on the PCA in the new Kulubnarti study. It's a big hole in the G25 not to have these great samples so is there some magic you can work perhaps?

I'll ask David if there's a different technical issue with the Sudan data because, frankly, I can't see coverage being a problem.

Hollfelder2017 overlaps with 550k SNPs from the Reich Lab 1240k dataset - as do most SNP arrays used in population genetics.

The majority of Estonian-Biocentre samples we have G25 coordinates for are genotyped on Human610/660W-Quad arrays which offer comparable coverage.

Something a bit unusual, one of the Medieval Nubians is R2 (I6254). Don't recall ever seeing it pop up in Africa.


I6254.hg19.bam R-Y12093 R-L295 R2a2b1b2b

Mnemonics
11-27-2021, 05:05 PM
I'll ask David if there's a different technical issue with the Sudan data because, frankly, I can't see coverage being a problem.

Hollfelder2017 overlaps with 550k SNPs from the Reich Lab 1240k dataset - as do most SNP arrays used in population genetics.

The majority of Estonian-Biocentre samples we have G25 coordinates for are genotyped on Human610/660W-Quad arrays which offer comparable coverage.

Something a bit unusual, one of the Medieval Nubians is R2 (I6254). Don't recall ever seeing it pop up in Africa.


I6254.hg19.bam R-Y12093 R-L295 R2a2b1b2b


R-L294 does seems heavily South Asian but Armenian and Arabian samples exist so it could be either a recent (South Asian/Central Asian) arrival or an old lineage that arrived with the Iran_N related ancestry in Egypt.

How's the coverage on that sample is it good enough for yfull?

aaronbee2010
11-27-2021, 05:21 PM
I'll ask David if there's a different technical issue with the Sudan data because, frankly, I can't see coverage being a problem.

Hollfelder2017 overlaps with 550k SNPs from the Reich Lab 1240k dataset - as do most SNP arrays used in population genetics.

The majority of Estonian-Biocentre samples we have G25 coordinates for are genotyped on Human610/660W-Quad arrays which offer comparable coverage.

Something a bit unusual, one of the Medieval Nubians is R2 (I6254). Don't recall ever seeing it pop up in Africa.


I6254.hg19.bam R-Y12093 R-L295 R2a2b1b2b


I analysed that samples BAM file a couple of weeks ago. Even with manual variant-calling, I couldn't find any other haplogroup assignment deeper than what the paper assigned it when perusing YFulls and FTDNAs Y-trees.

It may be worthwhile to analyse private mutations from 1KG and HGDP samples under R2-L295 using their VCF files available online, as I6254 could share one or more private mutations with a living sample, thus resolving its subclade further. I might see if this works out if my current schedule allows it.

pegasus
11-27-2021, 08:46 PM
The best model for the Kulubnarti Nubians seems to be Kenya_PastoralIA + Ancient Egyptians + Morocco_EN




left pops:
Kulubnarti_MA
Kenya_PastoralIA
EgyptianAnc
Morocco_EN

right pops:
Cameroon_SMA.SG
Anatolia_N.SG
Iran_TepeAbdulHosein_N.SG
CHG
Mota
DevilsGate_N
Iberia_HG
Lebanon_MBA.SG
Russia_Afanasievo.SG
Rome_Imperial
Greece_Logkas_MBA.SG
Iberomaurusian
PPNB

0 Kulubnarti_MA 60
1 Kenya_PastoralIA 4
2 EgyptianAnc 4
3 Morocco_EN 3
4 Cameroon_SMA.SG 2
5 Anatolia_N.SG 5
6 Iran_TepeAbdulHosein_N.SG 3
7 CHG 2
8 Mota 1
9 DevilsGate_N 4
10 Iberia_HG 2
11 Lebanon_MBA.SG 5
12 Russia_Afanasievo.SG 2
13 Rome_Imperial 43
14 Greece_Logkas_MBA.SG 2
15 Iberomaurusian 4
16 PPNB 12
jackknife block size: 0.050
snps: 1150438 indivs: 158
number of blocks for block jackknife: 714
## ncols: 1150438
coverage: Kulubnarti_MA 1111256
coverage: Kenya_PastoralIA 661264
coverage: EgyptianAnc 816220
coverage: Morocco_EN 653097
coverage: Cameroon_SMA.SG 1148760
coverage: Anatolia_N.SG 1056084
coverage: Iran_TepeAbdulHosein_N.SG 1061032
coverage: CHG 1134595
coverage: Mota 1134612
coverage: DevilsGate_N 1134715
coverage: Iberia_HG 1042845
coverage: Lebanon_MBA.SG 1138714
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Greece_Logkas_MBA.SG 1149733
coverage: Iberomaurusian 1086672
coverage: PPNB 862586
Effective number of blocks: 631.346
numsnps used: 329481
codimension 1
f4info:
f4rank: 2 dof: 10 chisq: 5.665 tail: 0.842612619 dofdiff: 12 chisqdiff: -5.665 taildiff: 1
B:
scale 1.000 1.000
Anatolia_N.SG 1.079 0.520
Iran_TepeAbdulHosein_N.SG 0.958 0.426
CHG 0.984 0.409
Mota 0.060 -0.169
DevilsGate_N 0.797 0.132
Iberia_HG 0.979 0.251
Lebanon_MBA.SG 1.080 0.422
Russia_Afanasievo.SG 1.004 0.421
Rome_Imperial 1.063 0.469
Greece_Logkas_MBA.SG 1.087 0.446
Iberomaurusian 1.287 -3.226
PPNB 1.100 0.300
A:
scale 131.755 251.842
Kenya_PastoralIA -1.078 -0.333
EgyptianAnc 1.248 0.482
Morocco_EN 0.528 -1.630


full rank
f4info:
f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 10 chisqdiff: 5.665 taildiff: 0.842612619
B:
scale 120.942 102.107 129.139
Anatolia_N.SG -1.136 1.169 0.142
Iran_TepeAbdulHosein_N.SG -1.029 1.028 0.145
CHG -1.035 1.056 0.184
Mota -0.027 0.050 0.191
DevilsGate_N -0.810 0.819 0.306
Iberia_HG -0.996 1.025 0.314
Lebanon_MBA.SG -1.125 1.148 0.214
Russia_Afanasievo.SG -1.078 1.061 0.176
Rome_Imperial -1.135 1.131 0.169
Greece_Logkas_MBA.SG -1.164 1.145 0.194
Iberomaurusian -0.762 0.632 3.383
PPNB -1.131 1.142 0.331
A:
scale 1.732 1.732 1.732
Kenya_PastoralIA 1.732 0.000 0.000
EgyptianAnc 0.000 1.732 0.000
Morocco_EN 0.000 0.000 1.732


best coefficients: 0.529 0.447 0.024
Jackknife mean: 0.529078945 0.446810636 0.024110419
std. errors: 0.010 0.009 0.006

error covariance (* 1,000,000)
101 -75 -25
-75 88 -13
-25 -13 38


summ: Kulubnarti_MA 3 0.842613 0.529 0.447 0.024 101 -75 -25 88 -13 ...
38

fixed pat wt dof chisq tail prob
000 0 10 5.665 0.842613 0.529 0.447 0.024
001 1 11 21.861 0.0254715 0.547 0.453 0.000
010 1 11 994.305 0 1.007 0.000 -0.007 infeasible
100 1 11 2080.762 0 0.000 0.897 0.103
011 2 12 996.278 0 1.000 0.000 0.000
101 2 12 2176.863 0 0.000 1.000 0.000
110 2 12 4461.711 0 0.000 0.000 1.000
best pat: 000 0.842613 - -
best pat: 010 0 chi(nested): 988.640 p-value for nested model: 5.29546e-217
best pat: 011 1.18269e-205 chi(nested): 1.973 p-value for nested model: 0.160093

coeffs: 0.529 0.447 0.024

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Kenya_PastoralIA Anatolia_N.SG -0.009396 -24.672121
details: EgyptianAnc Anatolia_N.SG 0.011450 37.376822
details: Morocco_EN Anatolia_N.SG 0.001098 2.945026
dscore: Anatolia_N.SG f4: 0.000172 Z: 0.681466

details: Kenya_PastoralIA Iran_TepeAbdulHosein_N.SG -0.008506 -22.232757
details: EgyptianAnc Iran_TepeAbdulHosein_N.SG 0.010065 31.998309
details: Morocco_EN Iran_TepeAbdulHosein_N.SG 0.001127 2.934722
dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000025 Z: 0.101072

details: Kenya_PastoralIA CHG -0.008558 -21.436979
details: EgyptianAnc CHG 0.010346 31.871745
details: Morocco_EN CHG 0.001427 3.526370
dscore: CHG f4: 0.000130 Z: 0.494550

details: Kenya_PastoralIA Mota -0.000224 -0.646928
details: EgyptianAnc Mota 0.000486 1.707858
details: Morocco_EN Mota 0.001481 4.013705
dscore: Mota f4: 0.000134 Z: 0.579764

details: Kenya_PastoralIA DevilsGate_N -0.006698 -18.129234
details: EgyptianAnc DevilsGate_N 0.008024 26.800489
details: Morocco_EN DevilsGate_N 0.002370 6.170634
dscore: DevilsGate_N f4: 0.000099 Z: 0.418936

details: Kenya_PastoralIA Iberia_HG -0.008232 -20.772962
details: EgyptianAnc Iberia_HG 0.010041 30.852812
details: Morocco_EN Iberia_HG 0.002433 6.108523
dscore: Iberia_HG f4: 0.000190 Z: 0.733412

details: Kenya_PastoralIA Lebanon_MBA.SG -0.009304 -26.211089
details: EgyptianAnc Lebanon_MBA.SG 0.011243 39.703007
details: Morocco_EN Lebanon_MBA.SG 0.001656 4.598007
dscore: Lebanon_MBA.SG f4: 0.000142 Z: 0.618402

details: Kenya_PastoralIA Russia_Afanasievo.SG -0.008912 -23.458832
details: EgyptianAnc Russia_Afanasievo.SG 0.010387 32.751570
details: Morocco_EN Russia_Afanasievo.SG 0.001361 3.394666
dscore: Russia_Afanasievo.SG f4: -0.000041 Z: -0.163827

details: Kenya_PastoralIA Rome_Imperial -0.009382 -28.457057
details: EgyptianAnc Rome_Imperial 0.011074 42.981981
details: Morocco_EN Rome_Imperial 0.001307 3.949103
dscore: Rome_Imperial f4: 0.000017 Z: 0.080232

details: Kenya_PastoralIA Greece_Logkas_MBA.SG -0.009622 -25.160298
details: EgyptianAnc Greece_Logkas_MBA.SG 0.011214 35.114942
details: Morocco_EN Greece_Logkas_MBA.SG 0.001501 3.822187
dscore: Greece_Logkas_MBA.SG f4: -0.000043 Z: -0.170034

details: Kenya_PastoralIA Iberomaurusian -0.006301 -17.556329
details: EgyptianAnc Iberomaurusian 0.006194 21.490592
details: Morocco_EN Iberomaurusian 0.026195 59.111918
dscore: Iberomaurusian f4: 0.000065 Z: 0.284975

details: Kenya_PastoralIA PPNB -0.009356 -24.434080
details: EgyptianAnc PPNB 0.011182 36.271284
details: Morocco_EN PPNB 0.002564 6.495625
dscore: PPNB f4: 0.000109 Z: 0.437978

gendstat: Cameroon_SMA.SG Anatolia_N.SG 0.681
gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.101
gendstat: Cameroon_SMA.SG CHG 0.495
gendstat: Cameroon_SMA.SG Mota 0.580
gendstat: Cameroon_SMA.SG DevilsGate_N 0.419
gendstat: Cameroon_SMA.SG Iberia_HG 0.733
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG 0.618
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG -0.164
gendstat: Cameroon_SMA.SG Rome_Imperial 0.080
gendstat: Cameroon_SMA.SG Greece_Logkas_MBA.SG -0.170
gendstat: Cameroon_SMA.SG Iberomaurusian 0.285
gendstat: Cameroon_SMA.SG PPNB 0.438
gendstat: Anatolia_N.SG Iran_TepeAbdulHosein_N.SG -0.705
gendstat: Anatolia_N.SG CHG -0.197
gendstat: Anatolia_N.SG Mota -0.140
gendstat: Anatolia_N.SG DevilsGate_N -0.345
gendstat: Anatolia_N.SG Iberia_HG 0.087
gendstat: Anatolia_N.SG Lebanon_MBA.SG -0.182
gendstat: Anatolia_N.SG Russia_Afanasievo.SG -1.088
gendstat: Anatolia_N.SG Rome_Imperial -1.118
gendstat: Anatolia_N.SG Greece_Logkas_MBA.SG -1.142
gendstat: Anatolia_N.SG Iberomaurusian -0.511
gendstat: Anatolia_N.SG PPNB -0.337
gendstat: Iran_TepeAbdulHosein_N.SG CHG 0.515
gendstat: Iran_TepeAbdulHosein_N.SG Mota 0.395
gendstat: Iran_TepeAbdulHosein_N.SG DevilsGate_N 0.354
gendstat: Iran_TepeAbdulHosein_N.SG Iberia_HG 0.747
gendstat: Iran_TepeAbdulHosein_N.SG Lebanon_MBA.SG 0.654
gendstat: Iran_TepeAbdulHosein_N.SG Russia_Afanasievo.SG -0.319
gendstat: Iran_TepeAbdulHosein_N.SG Rome_Imperial -0.051
gendstat: Iran_TepeAbdulHosein_N.SG Greece_Logkas_MBA.SG -0.333
gendstat: Iran_TepeAbdulHosein_N.SG Iberomaurusian 0.179
gendstat: Iran_TepeAbdulHosein_N.SG PPNB 0.410
gendstat: CHG Mota 0.016
gendstat: CHG DevilsGate_N -0.136
gendstat: CHG Iberia_HG 0.266
gendstat: CHG Lebanon_MBA.SG 0.062
gendstat: CHG Russia_Afanasievo.SG -0.844
gendstat: CHG Rome_Imperial -0.666
gendstat: CHG Greece_Logkas_MBA.SG -0.801
gendstat: CHG Iberomaurusian -0.282
gendstat: CHG PPNB -0.097
gendstat: Mota DevilsGate_N -0.130
gendstat: Mota Iberia_HG 0.199
gendstat: Mota Lebanon_MBA.SG 0.029
gendstat: Mota Russia_Afanasievo.SG -0.664
gendstat: Mota Rome_Imperial -0.496
gendstat: Mota Greece_Logkas_MBA.SG -0.635
gendstat: Mota Iberomaurusian -0.277
gendstat: Mota PPNB -0.095
gendstat: DevilsGate_N Iberia_HG 0.414
gendstat: DevilsGate_N Lebanon_MBA.SG 0.225
gendstat: DevilsGate_N Russia_Afanasievo.SG -0.661
gendstat: DevilsGate_N Rome_Imperial -0.487
gendstat: DevilsGate_N Greece_Logkas_MBA.SG -0.664
gendstat: DevilsGate_N Iberomaurusian -0.159
gendstat: DevilsGate_N PPNB 0.045
gendstat: Iberia_HG Lebanon_MBA.SG -0.249
gendstat: Iberia_HG Russia_Afanasievo.SG -1.078
gendstat: Iberia_HG Rome_Imperial -1.026
gendstat: Iberia_HG Greece_Logkas_MBA.SG -1.101
gendstat: Iberia_HG Iberomaurusian -0.565
gendstat: Iberia_HG PPNB -0.388
gendstat: Lebanon_MBA.SG Russia_Afanasievo.SG -1.034
gendstat: Lebanon_MBA.SG Rome_Imperial -1.131
gendstat: Lebanon_MBA.SG Greece_Logkas_MBA.SG -1.052
gendstat: Lebanon_MBA.SG Iberomaurusian -0.407
gendstat: Lebanon_MBA.SG PPNB -0.186
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.393
gendstat: Russia_Afanasievo.SG Greece_Logkas_MBA.SG -0.014
gendstat: Russia_Afanasievo.SG Iberomaurusian 0.490
gendstat: Russia_Afanasievo.SG PPNB 0.733
gendstat: Rome_Imperial Greece_Logkas_MBA.SG -0.408
gendstat: Rome_Imperial Iberomaurusian 0.275
gendstat: Rome_Imperial PPNB 0.658
gendstat: Greece_Logkas_MBA.SG Iberomaurusian 0.497
gendstat: Greece_Logkas_MBA.SG PPNB 0.763
gendstat: Iberomaurusian PPNB 0.212




Does this mean they are essentially Half Copt like and Half Abyssinian Christian like?? Do such communities exist today in Sudan ?

drobbah
11-27-2021, 10:01 PM
Kenya_IA is more Masai-like then Habesha like

Mnemonics
11-27-2021, 11:46 PM
Kenya_IA is more Masai-like then Habesha like

The Masai have significantly more Mota and and less Eurasian but Kenya_PastoralIA is probably pretty close to them.

It is probably acting as a proxy for Nilo-Saharan + Cushitic related admixture. Kenya_PastoralIA seems to have too much South_Africa_2000BP to be a perfect source

altvred
11-28-2021, 12:53 AM
R-L294 does seems heavily South Asian but Armenian and Arabian samples exist so it could be either a recent (South Asian/Central Asian) arrival or an old lineage that arrived with the Iran_N related ancestry in Egypt.

How's the coverage on that sample is it good enough for yfull?

Probably not. Samples sequenced with the 1240k array rarely make it on the YFull tree anyway. The coverage has to be near perfect for that to happen. A lot of the ones you see on there are resequenced shotgun versions of the old samples (https://www.yfull.com/samples-from-paper/499/).

Plots of a smartpca run.

https://drive.google.com/file/d/1X4da77RV9qBwGRWn_VmMuVdjtKMs-INa/view?usp=sharing

https://i.imgur.com/mIykLlS.png

https://i.imgur.com/oRmWVNJ.png

Michalis Moriopoulos
11-28-2021, 12:57 AM
Those look glorious on a PCA! I'm droolin'!

altvred
11-28-2021, 10:36 AM
Thanks to David's very quick response, here are the G25 coordinates already.

I'll try asking him if at least some of the samples from Hollfelder 2017 are usable.

Link (https://drive.google.com/file/d/11FCIFY81pLcKgeJ0AimI36OP_AgYl98d/view?usp=sharing)



Kulubnarti_MA_MA:I6138,-0.224232,0.132019,-0.026776,-0.065892,0.00277,-0.026774,-0.019036,0.001615,0.088763,-0.073988,0.001624,-0.023229,0.000446,-0.003028,0.025244,-0.037523,0.000261,-0.018623,0.005656,-0.004877,-0.011605,0.003215,0.012571,-0.00012,-0.002634
Kulubnarti_MA_MA:I6140,-0.192361,0.107646,-0.019987,-0.072029,-0.003077,-0.03765,-0.035252,0.020076,0.0859,-0.046288,-0.002761,-0.008992,0.013677,0.00289,0.007465,-0.023468,0.012778,-0.012669,0.004148,-0.005253,-0.000125,0.001484,0.000863,-0.003976,-0.005628
Kulubnarti_MA_MA:I6141,-0.209435,0.101553,-0.030547,-0.083657,0.003693,-0.03765,-0.023971,0.003461,0.088559,-0.051573,0.002761,-0.007793,0.00773,-0.005367,0.0095,0.006629,0.014994,-0.005701,-0.006788,0.005753,0.001497,0.004204,-0.003328,0.001928,-0.007065
Kulubnarti_MA_MA:I6250,-0.217402,0.100537,-0.043746,-0.072029,0.012925,-0.039324,-0.020211,0.023307,0.094285,-0.041003,0.00065,-0.019033,0.01219,-0.006331,0.012351,-0.01074,-0.002217,0.000253,0.008799,-0.011631,0.008735,0.001484,-0.016515,-0.008676,0.00455
Kulubnarti_MA_MA:I6251,-0.194638,0.107646,-0.019233,-0.089794,0.010463,-0.041276,-0.023736,0.010615,0.083855,-0.041185,0.002111,-0.01139,0.007879,-0.00055,0.011401,-0.014983,-0.005215,-0.009375,-0.000126,0.001876,0.000374,0.004946,-0.002711,-0.003253,0.001078
Kulubnarti_MA_MA:I6252,-0.253826,0.100537,-0.025267,-0.075905,0.005847,-0.025658,-0.037367,0.010615,0.085491,-0.066698,-0.013641,0.002698,0.001189,0.002477,0.013843,-0.015248,0.011604,-0.00228,-0.005531,-0.00963,0.002121,0.002102,0.009367,0.001325,-0.001078
Kulubnarti_MA_MA:I6253,-0.226508,0.11577,-0.031301,-0.082042,0.018773,-0.04267,-0.021621,0.013384,0.093876,-0.054124,-0.005521,-0.003897,0.006095,-0.000413,0.018458,-0.007027,0.026338,-0.006714,-0.002137,0.000375,0.011105,-0.003215,0.009737,0.006507,-0.00479
Kulubnarti_MA_MA:I6254,-0.229923,0.113739,-0.034695,-0.078166,0.005847,-0.039881,-0.020446,0.007154,0.082832,-0.051573,-0.003085,0.001649,0.008325,-0.00523,0.003936,0.002254,0.01708,-0.020904,0.004022,-0.000625,0.002121,0.000618,0.001602,-0.004699,-0.002634
Kulubnarti_MA_MA:I6255,-0.209435,0.111708,-0.024136,-0.080427,0.00277,-0.034304,-0.028436,0.015692,0.088968,-0.04811,-0.00406,-0.008393,0.009514,-0.003716,0.010586,-0.021745,-0.000522,-0.012289,0.001508,-0.002876,0.001996,0.00371,-0.000863,-0.008314,0.000718
Kulubnarti_MA_MA:I6256,-0.221955,0.108662,-0.032432,-0.078489,0.004001,-0.030957,-0.021621,0.004615,0.074856,-0.050662,-0.003897,-0.01124,0.018731,0.002615,0.009772,-0.008884,-0.000652,-0.012162,0.008673,-0.003126,-0.011605,0.009645,0.005669,0.006386,-0.005389
Kulubnarti_MA_MA:I6257,-0.182117,0.108662,-0.034318,-0.078812,0.009232,-0.037371,-0.031961,0.004154,0.071583,-0.036629,-0.004547,-0.004796,0.021258,-0.004817,0.008143,-0.017237,-0.00326,-0.006841,0.000251,-0.007879,-0.001996,-0.007419,0.002958,0.005663,0.008143
Kulubnarti_MA_MA:I6258,-0.201467,0.105615,-0.024513,-0.084626,0.001846,-0.035698,-0.024206,0.017768,0.075674,-0.046288,-0.006983,-0.003747,0.005203,-0.00234,0.020358,-0.00769,0.011604,-0.014949,0.006536,-0.003752,-0.007612,-0.007543,0.00037,0.008314,0.00946
Kulubnarti_MA_MA:I6324,-0.185532,0.111708,-0.033941,-0.073644,0.001846,-0.031236,-0.026321,0.004615,0.079969,-0.037905,-0.005034,-0.005545,0.013528,-0.003716,0.006786,-0.006364,0.017341,-0.008235,-0.005279,0.001376,-0.003743,-0.000866,-0.002835,0.004217,-0.007185
Kulubnarti_MA_MA:I6325,-0.212849,0.109677,-0.033941,-0.070414,0.004308,-0.039045,-0.024206,0.01223,0.085695,-0.041914,-0.005846,-0.008243,0.005203,-0.009634,0.020765,-0.010077,-0.000391,-0.013429,0.004399,0.006253,-0.004492,-0.003339,0.003821,0.001807,0.000718
Kulubnarti_MA_MA:I6326,-0.221955,0.107646,-0.033564,-0.073967,0.004924,-0.030957,-0.030786,0.004846,0.090809,-0.043554,0.002436,0.000749,0.011298,0.000413,0.018 322,-0.01896,-0.002868,-0.006968,-0.004022,-0.001376,0.006364,-0.002597,0.013311,0.003012,-0.001317
Kulubnarti_MA_MA:I6327,-0.185532,0.112724,-0.032055,-0.083334,-0.001231,-0.034025,-0.015276,0.006461,0.093876,-0.043737,-0.003248,-0.013938,0.013677,-0.000413,0.012758,-0.013789,-0.004563,-0.014569,-0.010056,-0.01113,-0.005615,0.000989,-0.004683,-0.00253,0.004431
Kulubnarti_MA_MA:I6328,-0.26407,0.105615,-0.023381,-0.064923,0.004308,-0.040718,-0.025146,0.019384,0.088354,-0.068703,-0.001461,0.006444,0.000149,-0.005367,0.014794,-0.018828,0.011213,-0.027998,0.005531,-0.008129,-0.011605,0.000742,0.011339,-0.00976,0.008502
Kulubnarti_MA_MA:I6329,-0.227646,0.112724,-0.026021,-0.074936,-0.008925,-0.035419,-0.019976,0.007846,0.078537,-0.039727,-0.007632,-0.009591,0.00773,0.003991,0.027958,-0.009679,0.00352,-0.008995,0.017346,0.007253,0.003619,-0.009027,-0.001356,-0.010363,-0.007065
Kulubnarti_MA_MA:I6331,-0.219679,0.107646,-0.025644,-0.077843,0.007386,-0.03012,-0.022326,0.009692,0.095104,-0.051937,-0.003735,-0.009741,0.001338,0.009634,0.011265,-0.009679,0.006258,-0.010515,0.003142,-0.008629,0.003619,-0.001607,0.00456,-0.002289,-0.003952
Kulubnarti_MA_MA:I6332,-0.19919,0.111708,-0.034318,-0.086564,0.010771,-0.037371,-0.030316,0.005769,0.081196,-0.041368,-0.004222,-0.012439,0.008474,-0.009358,0.008007,-0.003447,0.011604,-0.02103,0.010182,0.000125,-0.002121,-0.003339,-0.000123,0.004579,-0.013651
Kulubnarti_MA_MA:I6333,-0.217402,0.111708,-0.029415,-0.073321,0.003693,-0.036256,-0.029611,0.028383,0.091422,-0.043554,-0.003573,0.003897,0.028543,-0.005918,0.039223,-0.018165,0.01369,0.003927,0.006536,0.009755,0.0009 98,0.008779,-0.012448,0.001325,-0.001437
Kulubnarti_MA_MA:I6334,-0.194638,0.116786,-0.026398,-0.083011,-0.005232,-0.030678,-0.031256,0.021461,0.089172,-0.050662,0.001949,0.001049,0.015312,0.002202,0.003 936,0.000265,0.003651,-0.00038,0.004651,-0.003252,0.004991,-0.00136,0.003204,0.000843,-0.011256
Kulubnarti_MA_MA:I6336,-0.188946,0.112724,-0.04186,-0.08398,-0.003385,-0.039602,-0.022326,0.001615,0.080378,-0.041732,-0.004222,-0.007194,0.018583,-0.008808,0.00855,0.003713,0.017863,-0.005574,-0.003897,0.006128,-0.000998,0.004451,0.009244,0.006266,-0.003473
Kulubnarti_MA_MA:I6337,-0.173011,0.119832,-0.043746,-0.086241,-0.000615,-0.039324,-0.027496,0.003231,0.086718,-0.051937,0.001299,0.003297,0.008176,0.004679,0.011 672,-0.015778,0.006389,-0.007601,0.00264,-0.005503,0.004243,0.00779,-0.001849,-0.00241,-0.004071
Kulubnarti_MA_MA:I6338,-0.195776,0.110693,-0.034695,-0.086241,0.004924,-0.047969,-0.028436,0.011769,0.079764,-0.047017,0.005846,-0.003897,0.010109,-0.000275,0.017779,-0.008088,0.011995,-0.016976,0,0.004627,0.006114,-0.007419,-0.006532,0.001205,-0.007784
Kulubnarti_MA_MA:I6340,-0.203743,0.113739,-0.026398,-0.073967,-0.003385,-0.032072,-0.025616,0.013384,0.084877,-0.054124,0.004222,-0.004796,0.003865,0.00234,0.007872,-0.0118,0.000782,-0.008235,0.006159,0.006878,-0.003743,0.002473,0.002711,-0.001687,0.003952
Kulubnarti_MA_MA:I17449,-0.221955,0.107646,-0.012822,-0.074936,-0.012002,-0.046575,-0.041832,0.009923,0.069743,-0.043008,-0.013478,-0.026976,0.00669,-0.000963,0.009908,-0.008751,-0.000522,-0.004687,0.005405,0.004377,0.016346,0.008285,-0.008874,-0.007832,0.001197
Kulubnarti_MA_MA:I17450,-0.228784,0.105615,-0.03017,-0.065246,-0.00277,-0.027331,-0.032901,0.007846,0.095513,-0.05212,-0.015265,-0.009741,-0.001338,-0.0139,0.008279,0.004906,0.027381,-0.012796,-0.006034,-0.01138,0.000499,0.003833,-0.008504,-0.013737,-0.017244
Kulubnarti_MA_MA:I17475,-0.204882,0.119832,-0.05242,-0.086564,0.004001,-0.043507,-0.022561,0.011307,0.096126,-0.061049,-0.004547,-0.003897,0.011744,-0.007844,0.009093,-0.011138,-0.004955,-0.019383,0.009553,-0.009254,-0.001497,-0.013231,0.000986,0.005422,0.001796
Kulubnarti_MA_MA:I17481,-0.194638,0.110693,-0.027153,-0.095608,0.002154,-0.032351,-0.013631,-0.000923,0.07956,-0.040639,-0.002436,0.002248,0.019326,0.00523,0.002443,-0.013789,0.00013,-0.027871,-0.004902,0.006628,-0.013975,-0.005317,0.007025,0.003374,0.00958
Kulubnarti_MA_MA:I17482,-0.178702,0.100537,-0.0445,-0.084949,-0.006155,-0.056057,-0.023736,0.016845,0.071788,-0.034078,0.008119,-0.018883,0,-0.016102,0.007193,0.000398,-0.000782,0.006334,0.020866,0.006753,-0.005989,-0.00507,-0.000123,0.023015,0.006347
Kulubnarti_MA_MA:I18507,-0.213987,0.118817,-0.020365,-0.078489,0.006463,-0.035698,-0.019036,0.006231,0.081196,-0.045377,-0.006008,-0.005245,0.008028,-0.000963,0.009908,-0.001061,0.030901,-0.010262,0.009176,0.001876,-0.013476,0,-0.005423,-0.010122,-0.007664
Kulubnarti_MA_MA:I18508,-0.27659,0.100537,-0.036958,-0.07106,0.00277,-0.024821,-0.031021,0.011076,0.088354,-0.065058,-0.009419,0.005095,0.007136,0.001927,0.018187,-0.006497,-0.002738,-0.012162,0.009679,-0.006503,0.009858,0.004204,-0.000863,0.002651,0.00012
Kulubnarti_MA_MA:I18509,-0.192361,0.113739,-0.032432,-0.084303,-0.001231,-0.032072,-0.024206,-0.001154,0.078537,-0.046652,-0.005034,-0.007793,0.013825,-0.003028,0.013436,-0.006762,0.007693,-0.02141,0.00264,-0.015758,0.002371,-0.001855,0.007765,0.000482,-0.001078
Kulubnarti_MA_MA:I18510,-0.246996,0.118817,-0.015462,-0.067184,-0.006463,-0.022869,-0.029611,0.012923,0.087536,-0.054124,-0.017051,-0.021281,-0.002973,0.011836,-0.0057,-0.012198,0.000522,-0.017356,0.008799,-0.022386,-0.001373,-0.000495,-0.018241,0.006025,-0.00479
Kulubnarti_MA_MA:I18511,-0.217402,0.100537,-0.033941,-0.070414,0.006155,-0.035698,-0.026321,0.005538,0.081196,-0.059773,0.004872,0.002098,0.010109,-0.009771,0.015879,-0.016309,0.015646,-0.014189,0.003017,-0.007379,0.004118,-0.007296,-0.001602,-0.007109,0.010298
Kulubnarti_MA_MA:I18514,-0.223093,0.106631,-0.027907,-0.078166,-0.007386,-0.043786,-0.016686,0.023307,0.090809,-0.069614,-0.015589,-0.019033,-0.001635,0.007019,-0.001357,-0.011403,0.007041,-0.007348,0.003394,0.005878,-0.001123,0.024483,-0.018734,-0.015062,-0.001796
Kulubnarti_MA_MA:I18517,-0.174149,0.096475,-0.033564,-0.091086,0.016311,-0.032072,-0.022326,0.015922,0.073833,-0.053031,0.01088,-0.005695,0.018731,0.019267,0.033251,-0.043622,0.007823,-0.014189,0.002765,-0.019759,-0.009483,0.017311,0.008627,-0.023979,-0.007903
Kulubnarti_MA_MA:I18518,-0.161629,0.116786,-0.031301,-0.082365,-0.000308,-0.028447,-0.023736,0.011076,0.071788,-0.032985,-0.002436,-0.007943,0.009514,0.004404,0.010586,-0.014452,0.007693,-0.007475,-0.007793,-0.007504,-0.00287,-0.000495,-0.001479,-0.00253,0.011616
Kulubnarti_MA_MA:I18519,-0.239029,0.103584,-0.028661,-0.08398,0.006155,-0.032072,-0.025616,0.017307,0.088354,-0.052302,-0.003248,-0.007044,0.004757,0.00523,0.001357,-0.012861,0.008214,-0.004181,0.002137,0.006378,0.001622,-0.001855,0.000863,-0.01205,-0.00946
Kulubnarti_MA_MA:I18520,-0.187808,0.117801,-0.035449,-0.075582,0.006155,-0.034861,-0.017861,0.011999,0.087741,-0.051755,0.002761,-0.004646,0.019029,-0.002064,0.000136,0.005304,0.00352,-0.015456,0.008925,-0.000625,-0.000873,-0.002844,0.000739,-0.003253,-0.000239
Kulubnarti_MA_MA:I18521,-0.213987,0.110693,-0.029038,-0.076228,0.008309,-0.032072,-0.026086,0.006461,0.085491,-0.04319,0.009906,0.002398,0.002676,-0.00055,0.013572,-0.005701,0.013821,-0.010895,-0.000126,-0.002626,-0.006114,-0.004822,-0.005053,-0.005302,-0.002155
Kulubnarti_MA_MA:I18522,-0.211711,0.110693,-0.036581,-0.066861,0.010463,-0.03765,-0.015276,0.017307,0.072401,-0.052484,-0.00341,-0.006294,0.002081,-0.013212,0.016422,0.000265,0.013299,-0.007095,0.003645,-0.006128,-0.002995,-0.00136,0.004437,0.002771,0.010777
Kulubnarti_MA_MA:I18525,-0.201467,0.106631,-0.045254,-0.08075,0.007694,-0.036256,-0.021621,0.006,0.089377,-0.051937,0.001299,-0.01124,0.00773,-0.00578,0.005022,0.00716,0.012908,-0.006841,0.005154,0.00025,0.006114,0.012736,0.0019 72,0.006266,0.002275
Kulubnarti_MA_MA:I18536,-0.262931,0.09546,-0.044123,-0.085272,0.004924,-0.036814,-0.021621,0.001154,0.093876,-0.051937,-0.013803,-0.007194,-0.00669,0.000275,0.017372,-0.011933,-0.003651,-0.024324,0.007165,0.000375,0.003868,0.010387,0.011 339,0.010122,-0.002994
Kulubnarti_MA_MA:I18538,-0.190085,0.101553,-0.026021,-0.080427,-0.000615,-0.049643,-0.026321,0.020076,0.082628,-0.03262,0.012666,0.005695,0.008622,0.00578,0.01397 9,-0.008486,0.014994,-0.020904,-0.014204,0.003252,0.013476,0.000989,0.004437,-0.005784,0.008502
Kulubnarti_MA_MA:I18610,-0.183255,0.111708,-0.031301,-0.091732,-0.003693,-0.043786,-0.031726,0.000923,0.074447,-0.041732,0.004709,-0.001798,0.017096,-0.003165,0.002714,-0.003845,0.026598,-0.012542,0.011816,0.011881,-0.00574,-0.005935,-0.000616,0.003615,-0.013053
Kulubnarti_MA_MA:I19014,-0.200329,0.083273,-0.017725,-0.082042,-0.008001,-0.03263,0.000705,-0.014999,0.099808,-0.053213,-0.012342,-0.006744,-0.002676,0.007569,0.016558,0.002652,0.014342,-0.007981,0.007542,0.03039,-0.001248,-0.013107,0.015159,-0.011086,-0.015687
Kulubnarti_MA_MA:I19015,-0.210573,0.116786,-0.031301,-0.077197,0.007078,-0.023148,-0.024441,-0.003461,0.082832,-0.054306,-0.015589,-0.006444,0.015312,-0.003853,0.007872,-0.00411,0.026859,0.004814,-0.005028,0.013882,0.003369,0.009769,0.00419,-0.002771,0.002634
Kulubnarti_MA_MA:I19148,-0.239029,0.129988,-0.029038,-0.063631,-0.00277,-0.015618,-0.019271,0.011769,0.07281,-0.059591,0.008931,-0.013188,0.016055,0.033718,0.021851,-0.005569,-0.006519,-0.004561,-0.005531,-0.006253,0.006239,-0.009892,0.016022,-0.01205,0.008143


https://i.imgur.com/LUA3h2h.png

Ajeje Brazorf
11-28-2021, 10:54 AM
Thanks to David's very quick response, here are the G25 coordinates already.

Quick run:



Sample
EAST_AFRICA
MIDDLE_EAST
EEF
TAFORALT
CHG
WEST_AFRICA
IRAN_N
WHG


Kulubnarti_MA_MA:I17449
38,4
43,2
7,8
4
0
5,2
0
0,6


Kulubnarti_MA_MA:I17450
44,6
34,6
11,4
7,6
0
0
0,8
1


Kulubnarti_MA_MA:I17475
39,2
44,2
6,8
9,8
0
0
0
0


Kulubnarti_MA_MA:I17481
36
38,2
12,8
12
0,2
0
0
0


Kulubnarti_MA_MA:I17482
37
44,4
11,4
4,2
0
0
1
0


Kulubnarti_MA_MA:I18507
42,8
34
17,2
6
0
0
0
0


Kulubnarti_MA_MA:I18508
51,6
41,2
1,8
5,4
0
0
0
0


Kulubnarti_MA_MA:I18509
38,2
40,4
11,2
8,4
1
0
0,8
0


Kulubnarti_MA_MA:I18510
49,4
32
15,6
3
0
0
0
0


Kulubnarti_MA_MA:I18511
41,6
35
8,6
10,6
4,2
0
0
0


Kulubnarti_MA_MA:I18514
46,4
46,6
6,8
0
0
0
0
0,2


Kulubnarti_MA_MA:I18517
35,2
39,6
10
9,6
3,8
0
0
0


Kulubnarti_MA_MA:I18518
33,4
34,8
16,8
9,8
4,2
0
1
0


Kulubnarti_MA_MA:I18519
45,2
36,6
10,2
8
0
0
0
0


Kulubnarti_MA_MA:I18520
38,4
44,8
10,6
6,2
0
0
0
0


Kulubnarti_MA_MA:I18521
41,6
34,2
15
9,2
0
0
0
0


Kulubnarti_MA_MA:I18522
41,6
32,6
13,4
7,8
1,6
0
2,6
0


Kulubnarti_MA_MA:I18525
41
47,8
7,4
3,8
0
0
0
0


Kulubnarti_MA_MA:I18536
48,4
38,8
5
7,8
0
0
0
0


Kulubnarti_MA_MA:I18538
36
34,6
13,6
12,8
1,8
0
0
0


Kulubnarti_MA_MA:I18610
37,2
43,4
12,8
6,6
0
0
0
0


Kulubnarti_MA_MA:I19014
37,8
41,2
6,6
8,6
0,8
0
0
0,6


Kulubnarti_MA_MA:I19015
40,6
42,4
9,2
6
0,6
0
0
0,2


Kulubnarti_MA_MA:I19148
40,6
40
2
8,8
4,2
3
0
1,2


Kulubnarti_MA_MA:I6138
42,6
32,8
9,4
11
4,2
0
0
0


Kulubnarti_MA_MA:I6140
38,6
35,4
14,4
9,6
1,2
0
0
0


Kulubnarti_MA_MA:I6141
40,8
44,2
7,6
7,4
0
0
0
0


Kulubnarti_MA_MA:I6250
42,2
41,8
8
6,6
0
0
0
0,6


Kulubnarti_MA_MA:I6251
38,4
38,8
13,8
9
0
0
0
0


Kulubnarti_MA_MA:I6252
47,6
33,2
8,6
9,2
1,4
0
0
0


Kulubnarti_MA_MA:I6253
42,6
34,6
12,4
10,4
0
0
0
0


Kulubnarti_MA_MA:I6254
44,2
37,8
11,2
6,8
0
0
0
0


Kulubnarti_MA_MA:I6255
40,8
37,4
12,4
9,4
0
0
0
0


Kulubnarti_MA_MA:I6256
43,4
43,6
7,8
5,2
0
0
0
0


Kulubnarti_MA_MA:I6257
35,4
37,4
13,8
11
0,6
0,2
1,6
0


Kulubnarti_MA_MA:I6258
39,6
35
13,4
9,6
2,4
0
0
0


Kulubnarti_MA_MA:I6324
37,2
37,4
14,2
9
2,2
0
0
0


Kulubnarti_MA_MA:I6325
40,4
36,2
11,2
11
1,2
0
0
0


Kulubnarti_MA_MA:I6326
41
37
9,4
12,4
0,2
0
0
0


Kulubnarti_MA_MA:I6327
36,4
42,2
10,8
10,6
0
0
0
0


Kulubnarti_MA_MA:I6328
48,6
26,8
11
11,8
1,8
0
0
0


Kulubnarti_MA_MA:I6329
42,6
39,2
8,6
7,2
1,6
0,8
0
0


Kulubnarti_MA_MA:I6331
43
36,4
12,4
8,2
0
0
0
0


Kulubnarti_MA_MA:I6332
39,2
38,6
13,8
8,4
0
0
0
0


Kulubnarti_MA_MA:I6333
41
43,6
4,8
9,2
0
0
0
1,4


Kulubnarti_MA_MA:I6334
39,6
44
10,4
6
0
0
0
0


Kulubnarti_MA_MA:I6336
37,2
46,6
8,4
7,6
0,2
0
0
0


Kulubnarti_MA_MA:I6337
36,6
45,8
10,8
5,4
1,4
0
0
0


Kulubnarti_MA_MA:I6338
37,8
41,6
10
9,8
0,8
0
0
0


Kulubnarti_MA_MA:I6340
40,8
39
10,8
7,2
2,2
0
0
0

Ajeje Brazorf
11-28-2021, 11:05 AM
https://i.imgur.com/gMyEIam.png


Kulubnarti_MA,-0.2105728,0.10967712,-0.0309163,-0.07856652,0.0026343,-0.03539678,-0.02447394,0.0097519,0.08432514,-0.04937134,-0.00272164,-0.00663312,0.00882742,-0.0004596,0.0121741,-0.0094828,0.0079899,-0.01083184,0.00280806,-0.00121808,-0.00012478,0.00054648,0.00104266,-0.00147248,-0.0011927

Models

Target: Kulubnarti_MA
Distance: 0.0229% / 0.02287333 | R2P
56.3 KEN_Pastoral_IA
43.7 EGY_Late_Period

Target: Kulubnarti_MA
Distance: 0.0184% / 0.01840138 | R3P
54.0 KEN_Pastoral_IA
41.1 EGY_Late_Period
4.9 MAR_EN

Target: Kulubnarti_MA
Distance: 0.0176% / 0.01760441 | R4P
54.6 KEN_Pastoral_IA
25.9 EGY_Late_Period
14.0 Levant_JOR_EBA
5.5 MAR_EN

Very distant to both modern and ancient populations

Average

Distance to: Kulubnarti_MA
0.03468747 Ethiopian_Tigray
0.03609105 Eritrean
0.03945093 Ethiopian_Afar
0.04055801 Ethiopian_Amhara
0.04317700 Ethiopian_Agaw
0.04827832 Ethiopian_Jew
0.06548050 KEN_Early_Pastoral_N
0.08065127 Ethiopian_Oromo
0.08759414 KEN_Pastoral_N_o
0.09642304 TZA_PN_o
0.10021117 KEN_Pastoral_N_Elmenteitan
0.10098421 Somali
0.10180780 KEN_HyraxHill_2300BP
0.10189958 TZA_PN
0.11118338 KEN_Pastoral_N
0.11589149 TZA_Luxmanda_3100BP
0.11806138 Somali_Kenya
0.11807518 Ethiopian_Wolayta
0.11882714 KEN_LuKENHill_3500BP
0.12216790 Moroccan_South

Individuals

Distance to: Kulubnarti_MA_MA:I19148
0.07451608 Ethiopian_Amhara

Distance to: Kulubnarti_MA_MA:I19015
0.04556901 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I19014
0.06570561 Eritrean

Distance to: Kulubnarti_MA_MA:I18610
0.05892965 Eritrean

Distance to: Kulubnarti_MA_MA:I18538
0.06459430 Eritrean

Distance to: Kulubnarti_MA_MA:I18536
0.05665279 Ethiopian_Oromo

Distance to: Kulubnarti_MA_MA:I18525
0.03762377 Eritrean

Distance to: Kulubnarti_MA_MA:I18522
0.05410623 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I18521
0.04710268 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I18520
0.04565896 Eritrean

Distance to: Kulubnarti_MA_MA:I18519
0.04779333 Ethiopian_Amhara

Distance to: Kulubnarti_MA_MA:I18518
0.07127769 Eritrean

Distance to: Kulubnarti_MA_MA:I18517
0.07938188 Eritrean

Distance to: Kulubnarti_MA_MA:I18514
0.05662968 Ethiopian_Jew

Distance to: Kulubnarti_MA_MA:I18511
0.04766903 Ethiopian_Afar

Distance to: Kulubnarti_MA_MA:I18510
0.07253804 KEN_Pastoral_N_o

Distance to: Kulubnarti_MA_MA:I18509
0.04776174 Eritrean

Distance to: Kulubnarti_MA_MA:I18508
0.04815146 Ethiopian_Oromo

Distance to: Kulubnarti_MA_MA:I18507
0.05078194 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I17482
0.07399718 Eritrean

Distance to: Kulubnarti_MA_MA:I17481
0.06010277 Eritrean

Distance to: Kulubnarti_MA_MA:I17475
0.04841434 Eritrean

Distance to: Kulubnarti_MA_MA:I17450
0.06055560 Ethiopian_Afar

Distance to: Kulubnarti_MA_MA:I17449
0.06316875 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6340
0.04359603 Eritrean

Distance to: Kulubnarti_MA_MA:I6338
0.04480753 Eritrean

Distance to: Kulubnarti_MA_MA:I6337
0.04951347 Eritrean

Distance to: Kulubnarti_MA_MA:I6336
0.04651618 Eritrean

Distance to: Kulubnarti_MA_MA:I6334
0.04635405 Eritrean

Distance to: Kulubnarti_MA_MA:I6333
0.05017397 Ethiopian_Afar

Distance to: Kulubnarti_MA_MA:I6332
0.04918561 Eritrean

Distance to: Kulubnarti_MA_MA:I6331
0.03888058 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6329
0.04975919 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6328
0.06301004 Ethiopian_Oromo

Distance to: Kulubnarti_MA_MA:I6327
0.04670729 Eritrean

Distance to: Kulubnarti_MA_MA:I6326
0.04356472 Ethiopian_Afar

Distance to: Kulubnarti_MA_MA:I6325
0.04486565 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6324
0.05193793 Eritrean

Distance to: Kulubnarti_MA_MA:I6258
0.05139014 Eritrean

Distance to: Kulubnarti_MA_MA:I6257
0.06051030 Eritrean

Distance to: Kulubnarti_MA_MA:I6256
0.04313973 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6255
0.04346623 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6254
0.04790461 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6253
0.04318522 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6252
0.05512672 Ethiopian_Oromo

Distance to: Kulubnarti_MA_MA:I6251
0.04472603 Eritrean

Distance to: Kulubnarti_MA_MA:I6250
0.05066356 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6141
0.03589681 Ethiopian_Tigray

Distance to: Kulubnarti_MA_MA:I6140
0.05345624 Eritrean

Distance to: Kulubnarti_MA_MA:I6138
0.06041604 Ethiopian_Amhara

Andre
11-28-2021, 11:09 AM
Average:


SUD_Kulubnarti.Nubian.Christian.EMA,-0.2105728,0.1096771,-0.0309163,-0.0785665,0.0026343,-0.0353968,-0.0244739,0.0097519,0.0843251,-0.0493713,-0.0027216,-0.0066331,0.0088274,-0.0004596,0.0121741,-0.0094828,0.0079899,-0.0108318,0.0028081,-0.0012181,-0.0001248,0.0005465,0.0010427,-0.0014725,-0.0011927


Target: SUD_Kulubnarti.Nubian.Christian.EMA
Distance: 3.5955% / 0.03595520
58.4 EGY_Late_Period
41.6 Dinka

Ajeje Brazorf
11-28-2021, 11:20 AM
Information about the samples (name, haplogroups, quality, dating, location, etc.)



Scaled G25
Object-ID
Colloquial-Skeletal
FTDNA-Y-Haplotree
FTDNA-mt-Haplotree
SNPs
Date
Simplified_Culture
Culture_Grouping
Location
SiteID
Country
Source


Kulubnarti_MA_MA:I6337,-0.173011,0.119832,-0.043746,-0.086241,-0.000615,-0.039324,-0.027496,0.003231,0.086718,-0.051937,0.001299,0.003297,0.008176,0.004679,0.011 672,-0.015778,0.006389,-0.007601,0.00264,-0.005503,0.004243,0.00779,-0.001849,-0.00241,-0.004071
I6337
S79
G-M201>L89>L156>P15>L1259>L30>L141>P303>L140
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L5>L5a>L5a1>L5a1b
579583
630
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6338,-0.195776,0.110693,-0.034695,-0.086241,0.004924,-0.047969,-0.028436,0.011769,0.079764,-0.047017,0.005846,-0.003897,0.010109,-0.000275,0.017779,-0.008088,0.011995,-0.016976,0,0.004627,0.006114,-0.007419,-0.006532,0.001205,-0.007784
I6338
S89

H>H2>H2a
563373
630
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6138,-0.224232,0.132019,-0.026776,-0.065892,0.00277,-0.026774,-0.019036,0.001615,0.088763,-0.073988,0.001624,-0.023229,0.000446,-0.003028,0.025244,-0.037523,0.000261,-0.018623,0.005656,-0.004877,-0.011605,0.003215,0.012571,-0.00012,-0.002634
I6138
R101
E-M96>CTS9083>P147>P177>M215>M35>Z827>CTS10298>CTS10880>CTS11051>Y37089>V1700>V1785>V6
H>H2>H2a
76201
680
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6325,-0.212849,0.109677,-0.033941,-0.070414,0.004308,-0.039045,-0.024206,0.01223,0.085695,-0.041914,-0.005846,-0.008243,0.005203,-0.009634,0.020765,-0.010077,-0.000391,-0.013429,0.004399,0.006253,-0.004492,-0.003339,0.003821,0.001807,0.000718
I6325
S73
J-M304>M172>M410>CTS7683>L26>PF5088>PF5125>Z2227>Z1846>M67>Z1847>PF5132>M92
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
525508
680
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6326,-0.221955,0.107646,-0.033564,-0.073967,0.004924,-0.030957,-0.030786,0.004846,0.090809,-0.043554,0.002436,0.000749,0.011298,0.000413,0.018 322,-0.01896,-0.002868,-0.006968,-0.004022,-0.001376,0.006364,-0.002597,0.013311,0.003012,-0.001317
I6326
S87

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
721713
690
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6140,-0.192361,0.107646,-0.019987,-0.072029,-0.003077,-0.03765,-0.035252,0.020076,0.0859,-0.046288,-0.002761,-0.008992,0.013677,0.00289,0.007465,-0.023468,0.012778,-0.012669,0.004148,-0.005253,-0.000125,0.001484,0.000863,-0.003976,-0.005628
I6140
R182

U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
259538
710
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6258,-0.201467,0.105615,-0.024513,-0.084626,0.001846,-0.035698,-0.024206,0.017768,0.075674,-0.046288,-0.006983,-0.003747,0.005203,-0.00234,0.020358,-0.00769,0.011604,-0.014949,0.006536,-0.003752,-0.007612,-0.007543,0.00037,0.008314,0.00946
I6258
S149

H>H2>H2a
349843
710
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6333,-0.217402,0.111708,-0.029415,-0.073321,0.003693,-0.036256,-0.029611,0.028383,0.091422,-0.043554,-0.003573,0.003897,0.028543,-0.005918,0.039223,-0.018165,0.01369,0.003927,0.006536,0.009755,0.0009 98,0.008779,-0.012448,0.001325,-0.001437
I6333
S17

T>T1>T1a>T1a7
111535
710
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6252,-0.253826,0.100537,-0.025267,-0.075905,0.005847,-0.025658,-0.037367,0.010615,0.085491,-0.066698,-0.013641,0.002698,0.001189,0.002477,0.013843,-0.015248,0.011604,-0.00228,-0.005531,-0.00963,0.002121,0.002102,0.009367,0.001325,-0.001078
I6252
R181
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>CTS693
H>H2>H2a
311112
720
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6250,-0.217402,0.100537,-0.043746,-0.072029,0.012925,-0.039324,-0.020211,0.023307,0.094285,-0.041003,0.00065,-0.019033,0.01219,-0.006331,0.012351,-0.01074,-0.002217,0.000253,0.008799,-0.011631,0.008735,0.001484,-0.016515,-0.008676,0.00455
I6250
R59
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>FGC14377>FGC14378>V32>CTS10314>CTS5995>BY7768>Y17750
H>H2>H2a
89134
730
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6251,-0.194638,0.107646,-0.019233,-0.089794,0.010463,-0.041276,-0.023736,0.010615,0.083855,-0.041185,0.002111,-0.01139,0.007879,-0.00055,0.011401,-0.014983,-0.005215,-0.009375,-0.000126,0.001876,0.000374,0.004946,-0.002711,-0.003253,0.001078
I6251
R152

ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a1'4>L0a1>L0a1a>L0a1a-A200G>L0a1a1
295085
730
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6255,-0.209435,0.111708,-0.024136,-0.080427,0.00277,-0.034304,-0.028436,0.015692,0.088968,-0.04811,-0.00406,-0.008393,0.009514,-0.003716,0.010586,-0.021745,-0.000522,-0.012289,0.001508,-0.002876,0.001996,0.00371,-0.000863,-0.008314,0.000718
I6255
S50
J-M304>M172>M410>CTS7683>L26>PF5088>PF5125>Z2227>Z1846>M67>Z1847>PF5132>M92
ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a1'4>L0a1>L0a1a>L0a1a-A200G>L0a1a1
580823
730
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6257,-0.182117,0.108662,-0.034318,-0.078812,0.009232,-0.037371,-0.031961,0.004154,0.071583,-0.036629,-0.004547,-0.004796,0.021258,-0.004817,0.008143,-0.017237,-0.00326,-0.006841,0.000251,-0.007879,-0.001996,-0.007419,0.002958,0.005663,0.008143
I6257
S81
J-M304>M267>CTS12238>Z2217>FGC82833>Z1828>BY69>Z18471
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
286717
740
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6324,-0.185532,0.111708,-0.033941,-0.073644,0.001846,-0.031236,-0.026321,0.004615,0.079969,-0.037905,-0.005034,-0.005545,0.013528,-0.003716,0.006786,-0.006364,0.017341,-0.008235,-0.005279,0.001376,-0.003743,-0.000866,-0.002835,0.004217,-0.007185
I6324
S133

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
505697
740
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6331,-0.219679,0.107646,-0.025644,-0.077843,0.007386,-0.03012,-0.022326,0.009692,0.095104,-0.051937,-0.003735,-0.009741,0.001338,0.009634,0.011265,-0.009679,0.006258,-0.010515,0.003142,-0.008629,0.003619,-0.001607,0.00456,-0.002289,-0.003952
I6331
R93
E-M96>CTS9083>P147>P177>M215>M35>Z827>CTS10298>CTS10880>CTS11051>Y37089>V1700>V1785>V6
H>H2>H2a
379123
740
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6256,-0.221955,0.108662,-0.032432,-0.078489,0.004001,-0.030957,-0.021621,0.004615,0.074856,-0.050662,-0.003897,-0.01124,0.018731,0.002615,0.009772,-0.008884,-0.000652,-0.012162,0.008673,-0.003126,-0.011605,0.009645,0.005669,0.006386,-0.005389
I6256
S68a

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
337800
750
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6329,-0.227646,0.112724,-0.026021,-0.074936,-0.008925,-0.035419,-0.019976,0.007846,0.078537,-0.039727,-0.007632,-0.009591,0.00773,0.003991,0.027958,-0.009679,0.00352,-0.008995,0.017346,0.007253,0.003619,-0.009027,-0.001356,-0.010363,-0.007065
I6329
R5

N>N1'5>N1>N1b>N1b1>N1b1a>N1b1a2
225453
760
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6332,-0.19919,0.111708,-0.034318,-0.086564,0.010771,-0.037371,-0.030316,0.005769,0.081196,-0.041368,-0.004222,-0.012439,0.008474,-0.009358,0.008007,-0.003447,0.011604,-0.02103,0.010182,0.000125,-0.002121,-0.003339,-0.000123,0.004579,-0.013651
I6332
S159
E-M96>M75>M41
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
623585
760
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6253,-0.226508,0.11577,-0.031301,-0.082042,0.018773,-0.04267,-0.021621,0.013384,0.093876,-0.054124,-0.005521,-0.003897,0.006095,-0.000413,0.018458,-0.007027,0.026338,-0.006714,-0.002137,0.000375,0.011105,-0.003215,0.009737,0.006507,-0.00479
I6253
R202

H>H2>H2a
327464
770
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6334,-0.194638,0.116786,-0.026398,-0.083011,-0.005232,-0.030678,-0.031256,0.021461,0.089172,-0.050662,0.001949,0.001049,0.015312,0.002202,0.003 936,0.000265,0.003651,-0.00038,0.004651,-0.003252,0.004991,-0.00136,0.003204,0.000843,-0.011256
I6334
S198
G-M201>L89>L156>P15>L1259>L30>L141>P303>L140
ROOT>NM>RSRS>L1'2'3'4'5'6>L1>L1b>L1b1>L1b1a>L1b1a2>L1b1a2a
358031
770
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6141,-0.209435,0.101553,-0.030547,-0.083657,0.003693,-0.03765,-0.023971,0.003461,0.088559,-0.051573,0.002761,-0.007793,0.00773,-0.005367,0.0095,0.006629,0.014994,-0.005701,-0.006788,0.005753,0.001497,0.004204,-0.003328,0.001928,-0.007065
I6141
R186

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!
266428
780
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6340,-0.203743,0.113739,-0.026398,-0.073967,-0.003385,-0.032072,-0.025616,0.013384,0.084877,-0.054124,0.004222,-0.004796,0.003865,0.00234,0.007872,-0.0118,0.000782,-0.008235,0.006159,0.006878,-0.003743,0.002473,0.002711,-0.001687,0.003952
I6340
R169
T-M184>L490>M70>Z19859>L454>L208>CTS11451>PF7455>Y12643
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
297254
780
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6336,-0.188946,0.112724,-0.04186,-0.08398,-0.003385,-0.039602,-0.022326,0.001615,0.080378,-0.041732,-0.004222,-0.007194,0.018583,-0.008808,0.00855,0.003713,0.017863,-0.005574,-0.003897,0.006128,-0.000998,0.004451,0.009244,0.006266,-0.003473
I6336
S27
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>CTS693
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
618141
800
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6328,-0.26407,0.105615,-0.023381,-0.064923,0.004308,-0.040718,-0.025146,0.019384,0.088354,-0.068703,-0.001461,0.006444,0.000149,-0.005367,0.014794,-0.018828,0.011213,-0.027998,0.005531,-0.008129,-0.011605,0.000742,0.011339,-0.00976,0.008502
I6328
R201
T-M184>L490>M70>Z19859>L454>L208
J>J2>J2a>J2a2>J2a2e
178456
810
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I17449,-0.221955,0.107646,-0.012822,-0.074936,-0.012002,-0.046575,-0.041832,0.009923,0.069743,-0.043008,-0.013478,-0.026976,0.00669,-0.000963,0.009908,-0.008751,-0.000522,-0.004687,0.005405,0.004377,0.016346,0.008285,-0.008874,-0.007832,0.001197
I17449
S147

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
120703
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I17450,-0.228784,0.105615,-0.03017,-0.065246,-0.00277,-0.027331,-0.032901,0.007846,0.095513,-0.05212,-0.015265,-0.009741,-0.001338,-0.0139,0.008279,0.004906,0.027381,-0.012796,-0.006034,-0.01138,0.000499,0.003833,-0.008504,-0.013737,-0.017244
I17450
S51

U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
107629
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I17475,-0.204882,0.119832,-0.05242,-0.086564,0.004001,-0.043507,-0.022561,0.011307,0.096126,-0.061049,-0.004547,-0.003897,0.011744,-0.007844,0.009093,-0.011138,-0.004955,-0.019383,0.009553,-0.009254,-0.001497,-0.013231,0.000986,0.005422,0.001796
I17475
S144
J-M304>M172>M410>CTS7683>L26>PF5088>PF5125>Z2227>Z1846>M67>Z1847>PF5132>M92
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
230748
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I17481,-0.194638,0.110693,-0.027153,-0.095608,0.002154,-0.032351,-0.013631,-0.000923,0.07956,-0.040639,-0.002436,0.002248,0.019326,0.00523,0.002443,-0.013789,0.00013,-0.027871,-0.004902,0.006628,-0.013975,-0.005317,0.007025,0.003374,0.00958
I17481
S45
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>FGC14377>FGC14378>V32>CTS10314>CTS5995
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
169370
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I17482,-0.178702,0.100537,-0.0445,-0.084949,-0.006155,-0.056057,-0.023736,0.016845,0.071788,-0.034078,0.008119,-0.018883,0,-0.016102,0.007193,0.000398,-0.000782,0.006334,0.020866,0.006753,-0.005989,-0.00507,-0.000123,0.023015,0.006347
I17482
S94b
G-M201>L89>L156>P15
ROOT>NM>RSRS>L1'2'3'4'5'6>L1>L1b>L1b1>L1b1a>L1b1a2>L1b1a2a
64030
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18507,-0.213987,0.118817,-0.020365,-0.078489,0.006463,-0.035698,-0.019036,0.006231,0.081196,-0.045377,-0.006008,-0.005245,0.008028,-0.000963,0.009908,-0.001061,0.030901,-0.010262,0.009176,0.001876,-0.013476,0,-0.005423,-0.010122,-0.007664
I18507
S114

U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
234373
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18508,-0.27659,0.100537,-0.036958,-0.07106,0.00277,-0.024821,-0.031021,0.011076,0.088354,-0.065058,-0.009419,0.005095,0.007136,0.001927,0.018187,-0.006497,-0.002738,-0.012162,0.009679,-0.006503,0.009858,0.004204,-0.000863,0.002651,0.00012
I18508
S115
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>FGC14377>FGC14378>V32>CTS10314>CTS5995>BY7768>Y17750
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
252053
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18509,-0.192361,0.113739,-0.032432,-0.084303,-0.001231,-0.032072,-0.024206,-0.001154,0.078537,-0.046652,-0.005034,-0.007793,0.013825,-0.003028,0.013436,-0.006762,0.007693,-0.02141,0.00264,-0.015758,0.002371,-0.001855,0.007765,0.000482,-0.001078
I18509
S132

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
288273
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18510,-0.246996,0.118817,-0.015462,-0.067184,-0.006463,-0.022869,-0.029611,0.012923,0.087536,-0.054124,-0.017051,-0.021281,-0.002973,0.011836,-0.0057,-0.012198,0.000522,-0.017356,0.008799,-0.022386,-0.001373,-0.000495,-0.018241,0.006025,-0.00479
I18510
S136

H>H2>H2a
61633
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18511,-0.217402,0.100537,-0.033941,-0.070414,0.006155,-0.035698,-0.026321,0.005538,0.081196,-0.059773,0.004872,0.002098,0.010109,-0.009771,0.015879,-0.016309,0.015646,-0.014189,0.003017,-0.007379,0.004118,-0.007296,-0.001602,-0.007109,0.010298
I18511
S143

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L3'4'6>L3'4>L3>L3b'f>L3f>L3f1>L3f1a>L3f1a1
177624
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18514,-0.223093,0.106631,-0.027907,-0.078166,-0.007386,-0.043786,-0.016686,0.023307,0.090809,-0.069614,-0.015589,-0.019033,-0.001635,0.007019,-0.001357,-0.011403,0.007041,-0.007348,0.003394,0.005878,-0.001123,0.024483,-0.018734,-0.015062,-0.001796
I18514
S182
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>CTS693
H>H2>H2a
98439
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18517,-0.174149,0.096475,-0.033564,-0.091086,0.016311,-0.032072,-0.022326,0.015922,0.073833,-0.053031,0.01088,-0.005695,0.018731,0.019267,0.033251,-0.043622,0.007823,-0.014189,0.002765,-0.019759,-0.009483,0.017311,0.008627,-0.023979,-0.007903
I18517
S2

N>N1'5>N1>N1b>N1b1>N1b1a>N1b1a2
61281
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18518,-0.161629,0.116786,-0.031301,-0.082365,-0.000308,-0.028447,-0.023736,0.011076,0.071788,-0.032985,-0.002436,-0.007943,0.009514,0.004404,0.010586,-0.014452,0.007693,-0.007475,-0.007793,-0.007504,-0.00287,-0.000495,-0.001479,-0.00253,0.011616
I18518
S201

ROOT>NM>RSRS>L1'2'3'4'5'6>L1>L1b>L1b1>L1b1a>L1b1a2>L1b1a2a
266475
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18520,-0.187808,0.117801,-0.035449,-0.075582,0.006155,-0.034861,-0.017861,0.011999,0.087741,-0.051755,0.002761,-0.004646,0.019029,-0.002064,0.000136,0.005304,0.00352,-0.015456,0.008925,-0.000625,-0.000873,-0.002844,0.000739,-0.003253,-0.000239
I18520
S217
J-M304>M267>CTS12238>Z2217>L620>PF4832>L136>P58>CTS9721>PF4678>Z1865>Z1853>L862>PF4843>YSC0000235
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
278332
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18521,-0.213987,0.110693,-0.029038,-0.076228,0.008309,-0.032072,-0.026086,0.006461,0.085491,-0.04319,0.009906,0.002398,0.002676,-0.00055,0.013572,-0.005701,0.013821,-0.010895,-0.000126,-0.002626,-0.006114,-0.004822,-0.005053,-0.005302,-0.002155
I18521
S218

N>N1'5>N1>N1b>N1b1>N1b1a>N1b1a2
357966
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18522,-0.211711,0.110693,-0.036581,-0.066861,0.010463,-0.03765,-0.015276,0.017307,0.072401,-0.052484,-0.00341,-0.006294,0.002081,-0.013212,0.016422,0.000265,0.013299,-0.007095,0.003645,-0.006128,-0.002995,-0.00136,0.004437,0.002771,0.010777
I18522
S235

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
282622
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18525,-0.201467,0.106631,-0.045254,-0.08075,0.007694,-0.036256,-0.021621,0.006,0.089377,-0.051937,0.001299,-0.01124,0.00773,-0.00578,0.005022,0.00716,0.012908,-0.006841,0.005154,0.00025,0.006114,0.012736,0.0019 72,0.006266,0.002275
I18525
S37

U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
311905
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18536,-0.262931,0.09546,-0.044123,-0.085272,0.004924,-0.036814,-0.021621,0.001154,0.093876,-0.051937,-0.013803,-0.007194,-0.00669,0.000275,0.017372,-0.011933,-0.003651,-0.024324,0.007165,0.000375,0.003868,0.010387,0.011 339,0.010122,-0.002994
I18536
S42b

N>N1'5>N1>N1a>N1a1'2>N1a1>N1a1a
119764
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18538,-0.190085,0.101553,-0.026021,-0.080427,-0.000615,-0.049643,-0.026321,0.020076,0.082628,-0.03262,0.012666,0.005695,0.008622,0.00578,0.01397 9,-0.008486,0.014994,-0.020904,-0.014204,0.003252,0.013476,0.000989,0.004437,-0.005784,0.008502
I18538
S53

ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
163900
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18610,-0.183255,0.111708,-0.031301,-0.091732,-0.003693,-0.043786,-0.031726,0.000923,0.074447,-0.041732,0.004709,-0.001798,0.017096,-0.003165,0.002714,-0.003845,0.026598,-0.012542,0.011816,0.011881,-0.00574,-0.005935,-0.000616,0.003615,-0.013053
I18610
S29
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>CTS693
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
251826
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I19014,-0.200329,0.083273,-0.017725,-0.082042,-0.008001,-0.03263,0.000705,-0.014999,0.099808,-0.053213,-0.012342,-0.006744,-0.002676,0.007569,0.016558,0.002652,0.014342,-0.007981,0.007542,0.03039,-0.001248,-0.013107,0.015159,-0.011086,-0.015687
I19014
R15
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>FGC14377>FGC14378>V32
H>H2>H2a
79927
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I19015,-0.210573,0.116786,-0.031301,-0.077197,0.007078,-0.023148,-0.024441,-0.003461,0.082832,-0.054306,-0.015589,-0.006444,0.015312,-0.003853,0.007872,-0.00411,0.026859,0.004814,-0.005028,0.013882,0.003369,0.009769,0.00419,-0.002771,0.002634
I19015
R21
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>CTS693
U>U5>U5a'b>U5b>U5b2>U5b2b>U5b2b5
186925
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I19148,-0.239029,0.129988,-0.029038,-0.063631,-0.00277,-0.015618,-0.019271,0.011769,0.07281,-0.059591,0.008931,-0.013188,0.016055,0.033718,0.021851,-0.005569,-0.006519,-0.004561,-0.005531,-0.006253,0.006239,-0.009892,0.016022,-0.01205,0.008143
I19148
R195

U>U2'3'4'7'8'9>U3>U3b
53016
825
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6254,-0.229923,0.113739,-0.034695,-0.078166,0.005847,-0.039881,-0.020446,0.007154,0.082832,-0.051573,-0.003085,0.001649,0.008325,-0.00523,0.003936,0.002254,0.01708,-0.020904,0.004022,-0.000625,0.002121,0.000618,0.001602,-0.004699,-0.002634
I6254
S33
R-M207>M479>M124>P267>FGC12586>M9710>V1180>FGC17608>V3714>Z29158>SK2153
ROOT>NM>RSRS>L0>L0a'b'f'g'k>L0a'b'f'g>L0a'b'g>L0a'g>L0a>L0a1'4>L0a1>L0a1a>L0a1a-A200G>L0a1a1
283524
860
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I18519,-0.239029,0.103584,-0.028661,-0.08398,0.006155,-0.032072,-0.025616,0.017307,0.088354,-0.052302,-0.003248,-0.007044,0.004757,0.00523,0.001357,-0.012861,0.008214,-0.004181,0.002137,0.006378,0.001622,-0.001855,0.000863,-0.01205,-0.00946
I18519
S208

J>J2>J2a>J2a2>J2a2e
575061
870
Sudan_MA
Christian Period Nubia
Kulubnarti
21-S-46 (S cemetery)
Sudan
SirakbioRxiv2021


Kulubnarti_MA_MA:I6327,-0.185532,0.112724,-0.032055,-0.083334,-0.001231,-0.034025,-0.015276,0.006461,0.093876,-0.043737,-0.003248,-0.013938,0.013677,-0.000413,0.012758,-0.013789,-0.004563,-0.014569,-0.010056,-0.01113,-0.005615,0.000989,-0.004683,-0.00253,0.004431
I6327
R196
E-M96>CTS9083>P147>P177>M215>M35>V68>M78>PF2179>Z1902>V12>CTS9007>FGC14377>FGC14378>V32>CTS10314>CTS5995>BY7768>Y17750
ROOT>NM>RSRS>L1'2'3'4'5'6>L2'3'4'5'6>L2'3'4'6>L2>L2a'b'c'd>L2a>L2a1'2'3'4>L2a1>L2a1-G143A>L2a1-G143A-G16309A!>L2a1d>L2a1d1
373192
870
Sudan_MA
Christian Period Nubia
Kulubnarti
21-R-2 (R cemetery)
Sudan
SirakbioRxiv2021

drobbah
11-28-2021, 02:03 PM
The most Natufian-like sample (the least Barcin_N admixed) is also a fellow E-V32 carrier.


Target: Kulubnarti_MA_MA:I18508
Distance: 4.2912% / 0.04291166
50.6 Sudanese
40.2 Levant_Natufian
4.8 IRN_Ganj_Dareh_N
3.2 TUR_Barcin_N
1.2 MAR_Taforalt

Compared to this individual who probably has substantial Barcin_N ancestry



Target: Kulubnarti_MA_MA:I18518
Distance: 3.8226% / 0.03822625
32.2 Dinka
32.2 Levant_Natufian
20.2 TUR_Barcin_N
9.0 IRN_Ganj_Dareh_N
6.4 MAR_Taforalt

Somali15 (lacks Mota and recent Arabian ancestry) in comparison


Target: SOMALI15
Distance: 5.0918% / 0.05091830
53.2 Sudanese
44.4 Levant_Natufian
2.4 MAR_Taforalt


Using Somali15 as a proxy for Cushitic ancestry for both of those samples



Target: Kulubnarti_MA_MA:I18508
Distance: 2.8281% / 0.02828124 | ADC: 0.25x RC
44.6 SOMALI15
28.6 Levant_Beirut_IAIII_Egyptian
26.8 Dinka


Target: Kulubnarti_MA_MA:I18518
Distance: 3.2690% / 0.03268961 | ADC: 0.25x RC
57.2 Levant_Beirut_IAIII_Egyptian
21.6 SOMALI15
21.2 Dinka


The most Cushitic samples


Target: Kulubnarti_MA_MA:I6338
Distance: 3.6219% / 0.03621854 | ADC: 0.25x RC
68.0 SOMALI15
32.0 Levant_Beirut_IAIII_Egyptian

Target: Kulubnarti_MA_MA:I6333
Distance: 4.8620% / 0.04861970 | ADC: 0.25x RC
75.2 SOMALI15
24.8 Levant_Beirut_IAIII_Egyptian




Distance to: Kulubnarti_MA_MA:I6138
0.06041604 Ethiopian_Amhara
0.06220231 Ethiopian_Afar
0.06228113 Ethiopian_Agaw
0.06335674 Ethiopian_Tigray
0.06375578 Ethiopian_Jew
0.06826314 Eritrean
0.08209781 Ethiopian_Oromo
0.09606226 Somali
0.11173783 Somali_Kenya
0.11182123 Ethiopian_Wolayta
0.13103464 Rendille
0.14468914 Moroccan_South
0.14948089 Iraqw
0.15623215 Berber_Algeria
0.18259104 Datog
0.19004588 Saharawi
0.19067231 Moroccan
0.19092833 Tunisian_Douz
0.19170610 Berber_MAR_ERR
0.19237220 Berber_MAR_TIZ
0.20150335 Algerian
0.20828730 Elmolo
0.20953157 Libyan
0.21030610 Mozabite
0.21339016 Tunisian


Distance to: Kulubnarti_MA_MA:I6333
0.05017397 Ethiopian_Afar
0.05137821 Ethiopian_Tigray
0.05362090 Ethiopian_Amhara
0.05439502 Eritrean
0.05715878 Ethiopian_Agaw
0.05790463 Ethiopian_Jew
0.08572520 Ethiopian_Oromo
0.10187706 Somali
0.11794456 Somali_Kenya
0.12110976 Ethiopian_Wolayta
0.13136008 Moroccan_South
0.13808751 Rendille
0.14473269 Berber_Algeria
0.16191705 Iraqw
0.17386831 Tunisian_Douz
0.17665635 Moroccan
0.17719813 Saharawi
0.18001048 Berber_MAR_ERR
0.18179879 Berber_MAR_TIZ
0.18963535 Algerian
0.19367746 Datog
0.19552377 Libyan
0.19946319 Mozabite
0.20100312 Tunisian
0.20405235 Tunisian_Berber_Matmata

Mnemonics
11-28-2021, 02:52 PM
Thanks to David's very quick response, here are the G25 coordinates already.

I'll try asking him if at least some of the samples from Hollfelder 2017 are usable.

Link (https://drive.google.com/file/d/11FCIFY81pLcKgeJ0AimI36OP_AgYl98d/view?usp=sharing)



Kulubnarti_MA_MA:I6138,-0.224232,0.132019,-0.026776,-0.065892,0.00277,-0.026774,-0.019036,0.001615,0.088763,-0.073988,0.001624,-0.023229,0.000446,-0.003028,0.025244,-0.037523,0.000261,-0.018623,0.005656,-0.004877,-0.011605,0.003215,0.012571,-0.00012,-0.002634
Kulubnarti_MA_MA:I6140,-0.192361,0.107646,-0.019987,-0.072029,-0.003077,-0.03765,-0.035252,0.020076,0.0859,-0.046288,-0.002761,-0.008992,0.013677,0.00289,0.007465,-0.023468,0.012778,-0.012669,0.004148,-0.005253,-0.000125,0.001484,0.000863,-0.003976,-0.005628
Kulubnarti_MA_MA:I6141,-0.209435,0.101553,-0.030547,-0.083657,0.003693,-0.03765,-0.023971,0.003461,0.088559,-0.051573,0.002761,-0.007793,0.00773,-0.005367,0.0095,0.006629,0.014994,-0.005701,-0.006788,0.005753,0.001497,0.004204,-0.003328,0.001928,-0.007065
Kulubnarti_MA_MA:I6250,-0.217402,0.100537,-0.043746,-0.072029,0.012925,-0.039324,-0.020211,0.023307,0.094285,-0.041003,0.00065,-0.019033,0.01219,-0.006331,0.012351,-0.01074,-0.002217,0.000253,0.008799,-0.011631,0.008735,0.001484,-0.016515,-0.008676,0.00455
Kulubnarti_MA_MA:I6251,-0.194638,0.107646,-0.019233,-0.089794,0.010463,-0.041276,-0.023736,0.010615,0.083855,-0.041185,0.002111,-0.01139,0.007879,-0.00055,0.011401,-0.014983,-0.005215,-0.009375,-0.000126,0.001876,0.000374,0.004946,-0.002711,-0.003253,0.001078
Kulubnarti_MA_MA:I6252,-0.253826,0.100537,-0.025267,-0.075905,0.005847,-0.025658,-0.037367,0.010615,0.085491,-0.066698,-0.013641,0.002698,0.001189,0.002477,0.013843,-0.015248,0.011604,-0.00228,-0.005531,-0.00963,0.002121,0.002102,0.009367,0.001325,-0.001078
Kulubnarti_MA_MA:I6253,-0.226508,0.11577,-0.031301,-0.082042,0.018773,-0.04267,-0.021621,0.013384,0.093876,-0.054124,-0.005521,-0.003897,0.006095,-0.000413,0.018458,-0.007027,0.026338,-0.006714,-0.002137,0.000375,0.011105,-0.003215,0.009737,0.006507,-0.00479
Kulubnarti_MA_MA:I6254,-0.229923,0.113739,-0.034695,-0.078166,0.005847,-0.039881,-0.020446,0.007154,0.082832,-0.051573,-0.003085,0.001649,0.008325,-0.00523,0.003936,0.002254,0.01708,-0.020904,0.004022,-0.000625,0.002121,0.000618,0.001602,-0.004699,-0.002634
Kulubnarti_MA_MA:I6255,-0.209435,0.111708,-0.024136,-0.080427,0.00277,-0.034304,-0.028436,0.015692,0.088968,-0.04811,-0.00406,-0.008393,0.009514,-0.003716,0.010586,-0.021745,-0.000522,-0.012289,0.001508,-0.002876,0.001996,0.00371,-0.000863,-0.008314,0.000718
Kulubnarti_MA_MA:I6256,-0.221955,0.108662,-0.032432,-0.078489,0.004001,-0.030957,-0.021621,0.004615,0.074856,-0.050662,-0.003897,-0.01124,0.018731,0.002615,0.009772,-0.008884,-0.000652,-0.012162,0.008673,-0.003126,-0.011605,0.009645,0.005669,0.006386,-0.005389
Kulubnarti_MA_MA:I6257,-0.182117,0.108662,-0.034318,-0.078812,0.009232,-0.037371,-0.031961,0.004154,0.071583,-0.036629,-0.004547,-0.004796,0.021258,-0.004817,0.008143,-0.017237,-0.00326,-0.006841,0.000251,-0.007879,-0.001996,-0.007419,0.002958,0.005663,0.008143
Kulubnarti_MA_MA:I6258,-0.201467,0.105615,-0.024513,-0.084626,0.001846,-0.035698,-0.024206,0.017768,0.075674,-0.046288,-0.006983,-0.003747,0.005203,-0.00234,0.020358,-0.00769,0.011604,-0.014949,0.006536,-0.003752,-0.007612,-0.007543,0.00037,0.008314,0.00946
Kulubnarti_MA_MA:I6324,-0.185532,0.111708,-0.033941,-0.073644,0.001846,-0.031236,-0.026321,0.004615,0.079969,-0.037905,-0.005034,-0.005545,0.013528,-0.003716,0.006786,-0.006364,0.017341,-0.008235,-0.005279,0.001376,-0.003743,-0.000866,-0.002835,0.004217,-0.007185
Kulubnarti_MA_MA:I6325,-0.212849,0.109677,-0.033941,-0.070414,0.004308,-0.039045,-0.024206,0.01223,0.085695,-0.041914,-0.005846,-0.008243,0.005203,-0.009634,0.020765,-0.010077,-0.000391,-0.013429,0.004399,0.006253,-0.004492,-0.003339,0.003821,0.001807,0.000718
Kulubnarti_MA_MA:I6326,-0.221955,0.107646,-0.033564,-0.073967,0.004924,-0.030957,-0.030786,0.004846,0.090809,-0.043554,0.002436,0.000749,0.011298,0.000413,0.018 322,-0.01896,-0.002868,-0.006968,-0.004022,-0.001376,0.006364,-0.002597,0.013311,0.003012,-0.001317
Kulubnarti_MA_MA:I6327,-0.185532,0.112724,-0.032055,-0.083334,-0.001231,-0.034025,-0.015276,0.006461,0.093876,-0.043737,-0.003248,-0.013938,0.013677,-0.000413,0.012758,-0.013789,-0.004563,-0.014569,-0.010056,-0.01113,-0.005615,0.000989,-0.004683,-0.00253,0.004431
Kulubnarti_MA_MA:I6328,-0.26407,0.105615,-0.023381,-0.064923,0.004308,-0.040718,-0.025146,0.019384,0.088354,-0.068703,-0.001461,0.006444,0.000149,-0.005367,0.014794,-0.018828,0.011213,-0.027998,0.005531,-0.008129,-0.011605,0.000742,0.011339,-0.00976,0.008502
Kulubnarti_MA_MA:I6329,-0.227646,0.112724,-0.026021,-0.074936,-0.008925,-0.035419,-0.019976,0.007846,0.078537,-0.039727,-0.007632,-0.009591,0.00773,0.003991,0.027958,-0.009679,0.00352,-0.008995,0.017346,0.007253,0.003619,-0.009027,-0.001356,-0.010363,-0.007065
Kulubnarti_MA_MA:I6331,-0.219679,0.107646,-0.025644,-0.077843,0.007386,-0.03012,-0.022326,0.009692,0.095104,-0.051937,-0.003735,-0.009741,0.001338,0.009634,0.011265,-0.009679,0.006258,-0.010515,0.003142,-0.008629,0.003619,-0.001607,0.00456,-0.002289,-0.003952
Kulubnarti_MA_MA:I6332,-0.19919,0.111708,-0.034318,-0.086564,0.010771,-0.037371,-0.030316,0.005769,0.081196,-0.041368,-0.004222,-0.012439,0.008474,-0.009358,0.008007,-0.003447,0.011604,-0.02103,0.010182,0.000125,-0.002121,-0.003339,-0.000123,0.004579,-0.013651
Kulubnarti_MA_MA:I6333,-0.217402,0.111708,-0.029415,-0.073321,0.003693,-0.036256,-0.029611,0.028383,0.091422,-0.043554,-0.003573,0.003897,0.028543,-0.005918,0.039223,-0.018165,0.01369,0.003927,0.006536,0.009755,0.0009 98,0.008779,-0.012448,0.001325,-0.001437
Kulubnarti_MA_MA:I6334,-0.194638,0.116786,-0.026398,-0.083011,-0.005232,-0.030678,-0.031256,0.021461,0.089172,-0.050662,0.001949,0.001049,0.015312,0.002202,0.003 936,0.000265,0.003651,-0.00038,0.004651,-0.003252,0.004991,-0.00136,0.003204,0.000843,-0.011256
Kulubnarti_MA_MA:I6336,-0.188946,0.112724,-0.04186,-0.08398,-0.003385,-0.039602,-0.022326,0.001615,0.080378,-0.041732,-0.004222,-0.007194,0.018583,-0.008808,0.00855,0.003713,0.017863,-0.005574,-0.003897,0.006128,-0.000998,0.004451,0.009244,0.006266,-0.003473
Kulubnarti_MA_MA:I6337,-0.173011,0.119832,-0.043746,-0.086241,-0.000615,-0.039324,-0.027496,0.003231,0.086718,-0.051937,0.001299,0.003297,0.008176,0.004679,0.011 672,-0.015778,0.006389,-0.007601,0.00264,-0.005503,0.004243,0.00779,-0.001849,-0.00241,-0.004071
Kulubnarti_MA_MA:I6338,-0.195776,0.110693,-0.034695,-0.086241,0.004924,-0.047969,-0.028436,0.011769,0.079764,-0.047017,0.005846,-0.003897,0.010109,-0.000275,0.017779,-0.008088,0.011995,-0.016976,0,0.004627,0.006114,-0.007419,-0.006532,0.001205,-0.007784
Kulubnarti_MA_MA:I6340,-0.203743,0.113739,-0.026398,-0.073967,-0.003385,-0.032072,-0.025616,0.013384,0.084877,-0.054124,0.004222,-0.004796,0.003865,0.00234,0.007872,-0.0118,0.000782,-0.008235,0.006159,0.006878,-0.003743,0.002473,0.002711,-0.001687,0.003952
Kulubnarti_MA_MA:I17449,-0.221955,0.107646,-0.012822,-0.074936,-0.012002,-0.046575,-0.041832,0.009923,0.069743,-0.043008,-0.013478,-0.026976,0.00669,-0.000963,0.009908,-0.008751,-0.000522,-0.004687,0.005405,0.004377,0.016346,0.008285,-0.008874,-0.007832,0.001197
Kulubnarti_MA_MA:I17450,-0.228784,0.105615,-0.03017,-0.065246,-0.00277,-0.027331,-0.032901,0.007846,0.095513,-0.05212,-0.015265,-0.009741,-0.001338,-0.0139,0.008279,0.004906,0.027381,-0.012796,-0.006034,-0.01138,0.000499,0.003833,-0.008504,-0.013737,-0.017244
Kulubnarti_MA_MA:I17475,-0.204882,0.119832,-0.05242,-0.086564,0.004001,-0.043507,-0.022561,0.011307,0.096126,-0.061049,-0.004547,-0.003897,0.011744,-0.007844,0.009093,-0.011138,-0.004955,-0.019383,0.009553,-0.009254,-0.001497,-0.013231,0.000986,0.005422,0.001796
Kulubnarti_MA_MA:I17481,-0.194638,0.110693,-0.027153,-0.095608,0.002154,-0.032351,-0.013631,-0.000923,0.07956,-0.040639,-0.002436,0.002248,0.019326,0.00523,0.002443,-0.013789,0.00013,-0.027871,-0.004902,0.006628,-0.013975,-0.005317,0.007025,0.003374,0.00958
Kulubnarti_MA_MA:I17482,-0.178702,0.100537,-0.0445,-0.084949,-0.006155,-0.056057,-0.023736,0.016845,0.071788,-0.034078,0.008119,-0.018883,0,-0.016102,0.007193,0.000398,-0.000782,0.006334,0.020866,0.006753,-0.005989,-0.00507,-0.000123,0.023015,0.006347
Kulubnarti_MA_MA:I18507,-0.213987,0.118817,-0.020365,-0.078489,0.006463,-0.035698,-0.019036,0.006231,0.081196,-0.045377,-0.006008,-0.005245,0.008028,-0.000963,0.009908,-0.001061,0.030901,-0.010262,0.009176,0.001876,-0.013476,0,-0.005423,-0.010122,-0.007664
Kulubnarti_MA_MA:I18508,-0.27659,0.100537,-0.036958,-0.07106,0.00277,-0.024821,-0.031021,0.011076,0.088354,-0.065058,-0.009419,0.005095,0.007136,0.001927,0.018187,-0.006497,-0.002738,-0.012162,0.009679,-0.006503,0.009858,0.004204,-0.000863,0.002651,0.00012
Kulubnarti_MA_MA:I18509,-0.192361,0.113739,-0.032432,-0.084303,-0.001231,-0.032072,-0.024206,-0.001154,0.078537,-0.046652,-0.005034,-0.007793,0.013825,-0.003028,0.013436,-0.006762,0.007693,-0.02141,0.00264,-0.015758,0.002371,-0.001855,0.007765,0.000482,-0.001078
Kulubnarti_MA_MA:I18510,-0.246996,0.118817,-0.015462,-0.067184,-0.006463,-0.022869,-0.029611,0.012923,0.087536,-0.054124,-0.017051,-0.021281,-0.002973,0.011836,-0.0057,-0.012198,0.000522,-0.017356,0.008799,-0.022386,-0.001373,-0.000495,-0.018241,0.006025,-0.00479
Kulubnarti_MA_MA:I18511,-0.217402,0.100537,-0.033941,-0.070414,0.006155,-0.035698,-0.026321,0.005538,0.081196,-0.059773,0.004872,0.002098,0.010109,-0.009771,0.015879,-0.016309,0.015646,-0.014189,0.003017,-0.007379,0.004118,-0.007296,-0.001602,-0.007109,0.010298
Kulubnarti_MA_MA:I18514,-0.223093,0.106631,-0.027907,-0.078166,-0.007386,-0.043786,-0.016686,0.023307,0.090809,-0.069614,-0.015589,-0.019033,-0.001635,0.007019,-0.001357,-0.011403,0.007041,-0.007348,0.003394,0.005878,-0.001123,0.024483,-0.018734,-0.015062,-0.001796
Kulubnarti_MA_MA:I18517,-0.174149,0.096475,-0.033564,-0.091086,0.016311,-0.032072,-0.022326,0.015922,0.073833,-0.053031,0.01088,-0.005695,0.018731,0.019267,0.033251,-0.043622,0.007823,-0.014189,0.002765,-0.019759,-0.009483,0.017311,0.008627,-0.023979,-0.007903
Kulubnarti_MA_MA:I18518,-0.161629,0.116786,-0.031301,-0.082365,-0.000308,-0.028447,-0.023736,0.011076,0.071788,-0.032985,-0.002436,-0.007943,0.009514,0.004404,0.010586,-0.014452,0.007693,-0.007475,-0.007793,-0.007504,-0.00287,-0.000495,-0.001479,-0.00253,0.011616
Kulubnarti_MA_MA:I18519,-0.239029,0.103584,-0.028661,-0.08398,0.006155,-0.032072,-0.025616,0.017307,0.088354,-0.052302,-0.003248,-0.007044,0.004757,0.00523,0.001357,-0.012861,0.008214,-0.004181,0.002137,0.006378,0.001622,-0.001855,0.000863,-0.01205,-0.00946
Kulubnarti_MA_MA:I18520,-0.187808,0.117801,-0.035449,-0.075582,0.006155,-0.034861,-0.017861,0.011999,0.087741,-0.051755,0.002761,-0.004646,0.019029,-0.002064,0.000136,0.005304,0.00352,-0.015456,0.008925,-0.000625,-0.000873,-0.002844,0.000739,-0.003253,-0.000239
Kulubnarti_MA_MA:I18521,-0.213987,0.110693,-0.029038,-0.076228,0.008309,-0.032072,-0.026086,0.006461,0.085491,-0.04319,0.009906,0.002398,0.002676,-0.00055,0.013572,-0.005701,0.013821,-0.010895,-0.000126,-0.002626,-0.006114,-0.004822,-0.005053,-0.005302,-0.002155
Kulubnarti_MA_MA:I18522,-0.211711,0.110693,-0.036581,-0.066861,0.010463,-0.03765,-0.015276,0.017307,0.072401,-0.052484,-0.00341,-0.006294,0.002081,-0.013212,0.016422,0.000265,0.013299,-0.007095,0.003645,-0.006128,-0.002995,-0.00136,0.004437,0.002771,0.010777
Kulubnarti_MA_MA:I18525,-0.201467,0.106631,-0.045254,-0.08075,0.007694,-0.036256,-0.021621,0.006,0.089377,-0.051937,0.001299,-0.01124,0.00773,-0.00578,0.005022,0.00716,0.012908,-0.006841,0.005154,0.00025,0.006114,0.012736,0.0019 72,0.006266,0.002275
Kulubnarti_MA_MA:I18536,-0.262931,0.09546,-0.044123,-0.085272,0.004924,-0.036814,-0.021621,0.001154,0.093876,-0.051937,-0.013803,-0.007194,-0.00669,0.000275,0.017372,-0.011933,-0.003651,-0.024324,0.007165,0.000375,0.003868,0.010387,0.011 339,0.010122,-0.002994
Kulubnarti_MA_MA:I18538,-0.190085,0.101553,-0.026021,-0.080427,-0.000615,-0.049643,-0.026321,0.020076,0.082628,-0.03262,0.012666,0.005695,0.008622,0.00578,0.01397 9,-0.008486,0.014994,-0.020904,-0.014204,0.003252,0.013476,0.000989,0.004437,-0.005784,0.008502
Kulubnarti_MA_MA:I18610,-0.183255,0.111708,-0.031301,-0.091732,-0.003693,-0.043786,-0.031726,0.000923,0.074447,-0.041732,0.004709,-0.001798,0.017096,-0.003165,0.002714,-0.003845,0.026598,-0.012542,0.011816,0.011881,-0.00574,-0.005935,-0.000616,0.003615,-0.013053
Kulubnarti_MA_MA:I19014,-0.200329,0.083273,-0.017725,-0.082042,-0.008001,-0.03263,0.000705,-0.014999,0.099808,-0.053213,-0.012342,-0.006744,-0.002676,0.007569,0.016558,0.002652,0.014342,-0.007981,0.007542,0.03039,-0.001248,-0.013107,0.015159,-0.011086,-0.015687
Kulubnarti_MA_MA:I19015,-0.210573,0.116786,-0.031301,-0.077197,0.007078,-0.023148,-0.024441,-0.003461,0.082832,-0.054306,-0.015589,-0.006444,0.015312,-0.003853,0.007872,-0.00411,0.026859,0.004814,-0.005028,0.013882,0.003369,0.009769,0.00419,-0.002771,0.002634
Kulubnarti_MA_MA:I19148,-0.239029,0.129988,-0.029038,-0.063631,-0.00277,-0.015618,-0.019271,0.011769,0.07281,-0.059591,0.008931,-0.013188,0.016055,0.033718,0.021851,-0.005569,-0.006519,-0.004561,-0.005531,-0.006253,0.006239,-0.009892,0.016022,-0.01205,0.008143


https://i.imgur.com/LUA3h2h.png

The R-L294 carrying sample seems to lack any exotic admixture that isn't present in the rest of the population which rules out very recent admixture as a source for it but a Central Asia to Levant to Northeast Africa route seems possible. A Red Sea route is also possible.

Hitchcock
11-28-2021, 04:19 PM
If someone is wondering about differences between this Christian nubians and the modern..
The modern nubians have different proportions as well as to different type of ancesteries..
Kulubnarti has more Levant Bronze age ancestry and less Dinka ..
While modern Nubians have more Arabian-like more Natufian less Levant N ..and have more Dinka.

This Kulubnarti samples were probably ancestraly Egyptian admixed from like 200-300 BC or something.

nee4speed111
11-28-2021, 08:10 PM
I wonder if these samples could be used as a proxy for the additional SSA ancestry copts carry in comparison to the Ancient Egyptian samples we currently have? I know that there was extensive contact between Christian Nubians and copts for hundreds of years, including an invasion of Upper Egypt sometime in the 8th century.

Mnemonics
11-29-2021, 03:42 AM
Coverage of the individual samples





coverage: Kulubnarti_MA:I19148 57652
coverage: Kulubnarti_MA:I19014 85585
coverage: Kulubnarti_MA:I6257 298504
coverage: Kulubnarti_MA:I6333 118724
coverage: Kulubnarti_MA:I6332 632651
coverage: Kulubnarti_MA:I18518 282172
coverage: Kulubnarti_MA:I18511 189077
coverage: Kulubnarti_MA:I19140 24434
coverage: Kulubnarti_MA:I18536 127734
coverage: Kulubnarti_MA:I6334 370981
coverage: Kulubnarti_MA:I18612 27700
coverage: Kulubnarti_MA:I6324 522612
coverage: Kulubnarti_MA:I6250 94183
coverage: Kulubnarti_MA:I18610 264793
coverage: Kulubnarti_MA:I19136 40198
coverage: Kulubnarti_MA:I6251 311878
coverage: Kulubnarti_MA:I6337 589584
coverage: Kulubnarti_MA:I18522 299004
coverage: Kulubnarti_MA:I6253 347540
coverage: Kulubnarti_MA:I18538 172899
coverage: Kulubnarti_MA:I19015 195266
coverage: Kulubnarti_MA:I6326 738661
coverage: Kulubnarti_MA:I6140 273790
coverage: Kulubnarti_MA:I18525 329580
coverage: Kulubnarti_MA:I6255 589732
coverage: Kulubnarti_MA:I19143 53067
coverage: Kulubnarti_MA:I17482 67862
coverage: Kulubnarti_MA:I18521 375375
coverage: Kulubnarti_MA:I6338 584304
coverage: Kulubnarti_MA:I18517 65683
coverage: Kulubnarti_MA:I6329 267335
coverage: Kulubnarti_MA:I17473 51412
coverage: Kulubnarti_MA:I6258 365627
coverage: Kulubnarti_MA:I6331 443123
coverage: Kulubnarti_MA:I17449 127807
coverage: Kulubnarti_MA:I6138 80254
coverage: Kulubnarti_MA:I17477 50435
coverage: Kulubnarti_MA:I19135 42993
coverage: Kulubnarti_MA:I18514 104231
coverage: Kulubnarti_MA:I6252 322940
coverage: Kulubnarti_MA:I18507 247869
coverage: Kulubnarti_MA:I17481 177267
coverage: Kulubnarti_MA:I17475 241038
coverage: Kulubnarti_MA:I6254 294489
coverage: Kulubnarti_MA:I19144 23762
coverage: Kulubnarti_MA:I6327 386629
coverage: Kulubnarti_MA:I6256 354731
coverage: Kulubnarti_MA:I6325 537529
coverage: Kulubnarti_MA:I6336 627884
coverage: Kulubnarti_MA:I17451 26803
coverage: Kulubnarti_MA:I18509 304212
coverage: Kulubnarti_MA:I17450 114923
coverage: Kulubnarti_MA:I6328 186259
coverage: Kulubnarti_MA:I19138 44298
coverage: Kulubnarti_MA:I18508 261377
coverage: Kulubnarti_MA:I6340 308764
coverage: Kulubnarti_MA:I18519 593565
coverage: Kulubnarti_MA:I6141 280557
coverage: Kulubnarti_MA:I18510 66436
coverage: Kulubnarti_MA:I18520 289083

drobbah
11-29-2021, 09:05 PM
There's one sample that is the only one to have any Mota ancestry, something doesn't feel right with this one...


Target: Kulubnarti_MA_MA:I19014
Distance: 6.1493% / 0.06149307
43.8 Levant_Natufian
27.0 Sudanese
13.0 ETH_4500BP
7.0 TUR_Barcin_N
5.4 IRN_Ganj_Dareh_N
3.8 MAR_EN

Target: Kulubnarti_MA_MA:I19014
Distance: 5.8494% / 0.05849352
41.4 SOMALI15
32.2 Ancient_Egyptians
18.2 ETH_4500BP
8.2 Canary_Islands_Guanche




There's also this sample that carries significant IBM & Barcin ancestry so I decided to add a Maghrebi sample to see what would happen.



Target: Kulubnarti_MA_MA:I18538
Distance: 4.4070% / 0.04407032
35.2 Sudanese
33.6 Levant_Natufian
15.8 TUR_Barcin_N
10.4 MAR_EN
5.0 IRN_Ganj_Dareh_N


Target: Kulubnarti_MA_MA:I18538
Distance: 4.2141% / 0.04214116
31.6 Ancient_Egyptians
29.8 SOMALI15
20.4 Canary_Islands_Guanche
18.0 Sudanese
0.2 Yoruba

Mnemonics
11-30-2021, 12:01 AM
There's one sample that is the only one to have any Mota ancestry, something doesn't feel right with this one...


Target: Kulubnarti_MA_MA:I19014
Distance: 6.1493% / 0.06149307
43.8 Levant_Natufian
27.0 Sudanese
13.0 ETH_4500BP
7.0 TUR_Barcin_N
5.4 IRN_Ganj_Dareh_N
3.8 MAR_EN

Target: Kulubnarti_MA_MA:I19014
Distance: 5.8494% / 0.05849352
41.4 SOMALI15
32.2 Ancient_Egyptians
18.2 ETH_4500BP
8.2 Canary_Islands_Guanche




There's also this sample that carries significant IBM & Barcin ancestry so I decided to add a Maghrebi sample to see what would happen.



Target: Kulubnarti_MA_MA:I18538
Distance: 4.4070% / 0.04407032
35.2 Sudanese
33.6 Levant_Natufian
15.8 TUR_Barcin_N
10.4 MAR_EN
5.0 IRN_Ganj_Dareh_N


Target: Kulubnarti_MA_MA:I18538
Distance: 4.2141% / 0.04214116
31.6 Ancient_Egyptians
29.8 SOMALI15
20.4 Canary_Islands_Guanche
18.0 Sudanese
0.2 Yoruba


That is one of the sub 100K snp samples so the low coverage could be causing the poor fit.

Adamm
11-30-2021, 12:18 AM
There's one sample that is the only one to have any Mota ancestry, something doesn't feel right with this one...


Target: Kulubnarti_MA_MA:I19014
Distance: 6.1493% / 0.06149307
43.8 Levant_Natufian
27.0 Sudanese
13.0 ETH_4500BP
7.0 TUR_Barcin_N
5.4 IRN_Ganj_Dareh_N
3.8 MAR_EN

Target: Kulubnarti_MA_MA:I19014
Distance: 5.8494% / 0.05849352
41.4 SOMALI15
32.2 Ancient_Egyptians
18.2 ETH_4500BP
8.2 Canary_Islands_Guanche




There's also this sample that carries significant IBM & Barcin ancestry so I decided to add a Maghrebi sample to see what would happen.



Target: Kulubnarti_MA_MA:I18538
Distance: 4.4070% / 0.04407032
35.2 Sudanese
33.6 Levant_Natufian
15.8 TUR_Barcin_N
10.4 MAR_EN
5.0 IRN_Ganj_Dareh_N


Target: Kulubnarti_MA_MA:I18538
Distance: 4.2141% / 0.04214116
31.6 Ancient_Egyptians
29.8 SOMALI15
20.4 Canary_Islands_Guanche
18.0 Sudanese
0.2 Yoruba



Target: Kulubnarti_MA_MA:I18538
Distance: 3.8357% / 0.03835734
37.0 Early_Levantine_Farmer
36.0 Dinka
11.6 Early_European_Farmer
9.0 Iran_Neolithic
6.4 Iberomaurusian

Seabass
11-30-2021, 09:48 AM
If looking at the fit distance, keep in mind Copt is just one sample.

Target: Egyptian_Copt
Distance: 1.7737% / 0.01773684
48.8 Egyptian_Hellenistic_&_Roman
19.2 Levantine_IA_&_Roman
15.0 BedouinB_Arab
11.6 Kulubnarti_MA_MA
5.4 Canary_Islands_Guanche_gun011


Target: Egyptian
Distance: 0.6270% / 0.00627027
31.4 Levantine_IA_&_Roman
28.4 Egyptian_Hellenistic_&_Roman
13.0 Kulubnarti_MA_MA
9.0 Canary_Islands_Guanche_gun011
8.4 BedouinB_Arab
3.4 Yoruba
3.2 Greco-Anatolian_Ottoman
1.8 Dinka
1.4 PAK_Butkara_H

Ajeje Brazorf
11-30-2021, 02:15 PM
By the way, modern-day Egyptians also have ancestry from a West African-like source which Kulubnarti Sudanese samples and AEs lack.

Egyptian
40% MIDDLE_EAST
26.2% EEF
8.4% EAST_AFRICA
8.2% IRAN_N
7% CHG
6.6% TAFORALT
3.6% WEST_AFRICA

Ancient_Egyptian (proxy)
54.9% MIDDLE_EAST
25.7% EEF
9% CHG
5.8% TAFORALT
2.9% EAST_AFRICA
1.3% IRAN_N

Sudan_Kulubnarti
41.2% EAST_AFRICA
39.6% MIDDLE_EAST
10.8% EEF
8% TAFORALT
0.4% CHG

drobbah
11-30-2021, 02:58 PM
By the way, modern-day Egyptians also have ancestry from a West African-like source which Kulubnarti Sudanese samples and AEs lack.

Egyptian
40% MIDDLE_EAST
26.2% EEF
8.4% EAST_AFRICA
8.2% IRAN_N
7% CHG
6.6% TAFORALT
3.6% WEST_AFRICA

Ancient_Egyptian (proxy)
54.9% MIDDLE_EAST
25.7% EEF
9% CHG
5.8% TAFORALT
2.9% EAST_AFRICA
1.3% IRAN_N

Sudan_Kulubnarti
41.2% EAST_AFRICA
39.6% MIDDLE_EAST
10.8% EEF
8% TAFORALT
0.4% CHG
It would be nice to compare the Medieval Nubians to the modern Nubians and Sudanese Arabs, it’s more then likely that these groups may carry West African admixture like the modern Muslim Egyptians

Angoliga
11-30-2021, 06:31 PM
By the way, modern-day Egyptians also have ancestry from a West African-like source which Kulubnarti Sudanese samples and AEs lack.

Egyptian
40% MIDDLE_EAST
26.2% EEF
8.4% EAST_AFRICA
8.2% IRAN_N
7% CHG
6.6% TAFORALT
3.6% WEST_AFRICA

Ancient_Egyptian (proxy)
54.9% MIDDLE_EAST
25.7% EEF
9% CHG
5.8% TAFORALT
2.9% EAST_AFRICA
1.3% IRAN_N

Sudan_Kulubnarti
41.2% EAST_AFRICA
39.6% MIDDLE_EAST
10.8% EEF
8% TAFORALT
0.4% CHG

These Kulubnarti samples actually do have some minor West-African affinities, they're just mostly not in excess of the modern East-African source samples (Dinka, Sudanese...) which already have embedded W-African (~<20%).

pegasus
12-15-2021, 01:04 PM
The full paper is out now
https://www.nature.com/articles/s41467-021-27356-8

Incredibly fascinating. It would be interesting to see if there was some ancient regional cline that already existed long before in Dynastic times.

Leveraging previously published genome-wide data from three ancient Egyptians, we show that the West Eurasian-related ancestry detected at Kulubnarti was plausibly introduced via people from Egypt who harbored a majority of Western Eurasian-related ancestry and a minor proportion of Nilotic-related ancestry.

The rise (~300 BCE) and collapse (~350 CE) of the Meroitic Kingdom in Nubia provides a possible historical context for admixture between Egyptian peoples carrying West Eurasian-related ancestry and local Nubians (who may also have already had some amount of West Eurasian-related ancestry by this time, a process that would be further clarified by additional ancient DNA analysis of older individuals from Nubia).

The Kulubnarti Nubians on average are shifted slightly toward present-day West Eurasians relative to present-day Nubians, who are estimated to have ~40% West Eurasian-related ancestry

nee4speed111
12-26-2021, 07:36 AM
Samples 6251 & 6253 seem to have no recent Egyptian ancestry based off their amount of IRN_Ganj_Dareh_N ancestry, in comparison to some of the other samples which do seem to have recent Egyptian ancestry:


Target: Sudan_MA_Kulubnarti:I6253
Distance: 4.9704% / 0.04970362
42.0 Dinka
38.4 Levant_Natufian
14.2 TUR_Tepecik_Ciftlik_N
5.4 MAR_Taforalt

Target: Sudan_MA_Kulubnarti:I6251
Distance: 3.4951% / 0.03495148
40.6 Levant_Natufian
38.0 Dinka
18.2 TUR_Tepecik_Ciftlik_N
3.2 MAR_Taforalt

Some Horner populations in comparison:


Target: Ethiopian_Tigray
Distance: 4.4467% / 0.04446701
55.4 Levant_Natufian
39.0 Dinka
2.6 IRN_Ganj_Dareh_N
1.6 ETH_4500BP
1.4 TUR_Tepecik_Ciftlik_N


Target: Ethiopian_Oromo
Distance: 4.0999% / 0.04099908
46.8 Levant_Natufian
37.8 Dinka
14.2 ETH_4500BP
1.2 IRN_Ganj_Dareh_N


Target: Ethiopian_Jew
Distance: 4.8058% / 0.04805790
55.0 Levant_Natufian
38.8 Dinka
5.0 ETH_4500BP
1.2 IRN_Ganj_Dareh_N


Target: Ethiopian_Ari_cultivator
Distance: 3.0808% / 0.03080757
57.2 ETH_4500BP
21.4 Dinka
20.8 Levant_Natufian
0.6 MAR_Taforalt


Target: Ethiopian_Amhara
Distance: 4.5188% / 0.04518807
55.2 Levant_Natufian
38.6 Dinka
3.8 ETH_4500BP
2.4 IRN_Ganj_Dareh_N


Target: Somali
Distance: 5.0690% / 0.05069031
52.8 Dinka
45.2 Levant_Natufian
1.0 ETH_4500BP
1.0 MAR_Taforalt

These guys seem about as Dinka-like as Ethiopian Jews, Amhara & Tigrayans, however unlike them they seem to be lacking in Iran_N ancestry, have larger amounts of Taforalt ancestry and be significantly more Anatolia_N shifted in comparison to any modern Horner population. Perhaps an indication of older Egyptian ancestry, considering the current Ancient Egyptian samples on hand do display Iran_N ancestry

Source populations used
TUR_Barcin_N,0.1175998,0.180118,0.0035312,-0.101158,0.0510443,-0.0483875,-0.0043582,-0.0069334,0.0362287,0.0807473,0.0079718,0.0118803,-0.0234545,0.0004691,-0.0419807,-0.0101913,0.0233091,0.0019866,0.0136954,-0.0097489,-0.0142249,0.0057723,-0.0041232,-0.0031658,-0.0043437
TUR_Tepecik_Ciftlik_N,0.108701,0.1731478,-0.0143308,-0.100534,0.0270818,-0.0402298,-0.0045828,-0.005019,0.02623,0.05745,0.008444,0.0080555,-0.0101832,0.0052298,-0.0352192,-0.0104748,0.0088662,0.0004432,0.005342,-0.0032828,0.0026827,0.0044515,-0.0071795,-0.0038258,-0.0045805
BRA_LapaDoSanto_9600BP,0.050765,-0.3095332,0.1206032,0.098515,-0.1156522,-0.017626,-0.284645,-0.3400012,-0.0136212,-0.0184422,0.002241,-0.003267,0.0004162,0.017478,-0.0065688,0.0064438,0.006493,-0.001267,0.0026898,0.003727,-0.0010482,0.007963,-0.002662,-0.0043378,0.001413
Dinka,-0.577083,0.0507765,-0.0003773,-0.0075098,-0.0053855,-0.0016735,-0.0176848,0.0204222,0.081145,-0.0969495,-0.02107,0.022742,-0.0383172,-0.0011698,0.0101452,-0.021347,0.0186125,-0.0094382,0.0241968,-0.0241678,0.002402,0.003308,0.001479,0.0009038,0.0 096995
ETH_4500BP,-0.511066,0.043668,0.000754,0.000969,-0.00277,-0.011435,0.050997,-0.045229,0.089172,-0.087838,-0.012991,-0.002997,-0.031219,0.000688,0.02158,-0.029965,0.027772,0.039273,0.00176,-0.009004,0.000374,0.006183,-0.003451,-0.00241,-0.000838
Gambian,-0.6064875,0.0671942,0.0197362,0.0114665,0.0021028, 0.0055777,-0.0358392,0.0387677,-0.0317353,0.0241463,0.0054132,-0.0036467,0.0162287,-0.0009865,0.011016,-0.0153362,0.009692,-0.0011823,-0.002116,-0.0032307,-0.001643,-0.0018137,0.0043958,-0.0001005,0.001377
Han,0.0206952,-0.4507105,-0.0082967,-0.0651579,0.0780846,0.0374475,0.0029055,-0.004804,-0.0150232,-0.0031146,-0.0495875,-0.0070573,0.0072707,-0.0081072,-0.0043305,0.0012535,0.0017542,-0.0008638,-0.0020455,-0.0102206,0.0122397,0.0069582,0.0141063,-0.0012925,-0.0022315
IRN_Ganj_Dareh_N,0.0430252,0.0664158,-0.1550722,0.0047158,-0.122669,0.0235384,0.017109,-0.0011998,-0.082546,-0.0544158,-0.0028258,-0.0016186,0.0044896,-0.0062756,0.0316498,0.0561384,-0.0054242,0.0068664,0.0136508,-0.0334162,0.00856,-0.028836,-0.0110678,-0.039331,0.0222254
Jarawa,-0.0219821,-0.2430289,-0.1324164,0.0986968,0.0323713,-0.0045841,-0.01012,0.0065044,0.0546974,0.0238044,0.0228054,0. 0027349,-0.0041532,0.0103562,-0.0108067,-0.0114441,0.0094529,-0.0019082,-0.0062221,0.0286778,-0.0046401,0.0111366,-0.0123402,0.0022668,0.0049844
Levant_Natufian,0.01935,0.135065,-0.039221,-0.135984,0.026774,-0.076137,-0.019036,-0.024691,0.100626,-0.008018,0.02858,-0.019633,0.067343,0.001651,0.022801,0.02612,-0.0103,0.006714,-0.018101,0.041395,-0.004118,-0.003215,-0.014297,-0.011206,0.011975
MAR_Taforalt,-0.189857,0.0814452,-0.0242866,-0.085595,0.027636,-0.0552202,-0.0705968,0.0184146,0.155397,0.003499,0.0209156,-0.0318316,0.0747168,-0.0513334,0.0711988,-0.0363032,0.0052676,-0.066106,-0.1424162,0.0389938,-0.0376836,-0.1255322,0.0730118,-0.0137606,0.0164534
Nganassan,0.0476917,-0.4066181,0.1557885,0.0023902,-0.1594452,-0.0882129,0.0285066,0.0433367,0.0310876,0.0128477, 0.1028569,0.0094115,-0.0040734,-0.0261619,-0.0219731,-0.0123307,-0.0010952,0.0134165,0.0268365,-0.0008505,0.0431363,-0.0118954,0.0336096,0.0003977,0.0135556
WHG,0.1246365,0.116278,0.184789,0.189279,0.1546445 ,0.0464355,0.0131605,0.0372675,0.0890705,0.017768,-0.0153455,-0.015811,0.0159065,-0.0030275,0.053338,0.0582065,0.00502,0.016343,-0.0093015,0.055589,0.0944585,0.0111905,-0.049607,-0.160866,0.0170045
Yamnaya_RUS_Samara,0.1255849,0.089028,0.0426986,0. 1153479,-0.0287232,0.0450564,0.0036033,-0.0025642,-0.0559032,-0.0728943,0.0018222,3.32e-05,-0.0026924,-0.0233041,0.0366141,0.0157633,-0.0012316,-0.0017879,-0.0038408,0.0137704,-0.0031749,0.0007557,0.0110649,0.0186102,-0.004537
Yoruba,-0.6300625,0.0625011,0.022113,0.0167079,0.0005035,0 .0124741,-0.044417,0.0477673,-0.0488813,0.0327694,0.0046205,0.0007904,0.0230561, 0.0009509,0.0125232,-0.0096067,0.0070763,0.0004491,0.006022,-0.00299,0.0015542,0.0023156,-0.0017592,-0.0004711,-0.0004246

drobbah
12-27-2021, 11:34 PM
The Egyptian ancestry seems legit and there is a similar scenario with the Semitic ancestry in the Horn where Barcin ancestry doesn't show up in Ethio-Semites or Cushitic speakers despite modern Arabians do carry it substantially although not as high as other MENA regions.

I6253 & I6252

Target: Kulubnarti_MA_MA:I6253
Distance: 4.1477% / 0.04147747 | ADC: 0.25x RC
76.2 Ancient_Cushitic_N
23.8 Levant_Beirut_IAIII_Egyptian

Target: Kulubnarti_MA_MA:I6252
Distance: 3.8563% / 0.03856285 | ADC: 0.25x RC
42.4 Ancient_Cushitic_N
33.0 Levant_Beirut_IAIII_Egyptian
24.6 Dinka



Modern Beja (in comparison), Egyptian ancestry probably mediated by the Nubians perhaps??


Target: Sudanese_Hadendowa
Distance: 2.6832% / 0.02683201 | ADC: 0.25x RC
72.4 Ancient_Cushitic_N
19.0 Saudi
8.6 Levant_Beirut_IAIII_Egyptian

Target: Sudanese_BeniAmer
Distance: 1.7114% / 0.01711387 | ADC: 0.25x RC
66.8 Ancient_Cushitic_N
27.0 Saudi
6.2 Levant_Beirut_IAIII_Egyptian


Horners

Target: Somali:SOMALI15
Distance: 2.9728% / 0.02972797 | ADC: 0.25x RC
98.6 Ancient_Cushitic_N
1.4 Saudi

Target: Ethiopian_Amhara
Distance: 1.3551% / 0.01355060 | ADC: 0.25x RC
78.2 Ancient_Cushitic_N
21.8 Saudi

Target: Somaloid_Rendille
Distance: 1.8499% / 0.01849933 | ADC: 0.25x RC
69.2 Ancient_Cushitic_N
30.8 Ancient_Cushitic_IA

Target: Ethiopian_Tigray
Distance: 1.3640% / 0.01363979 | ADC: 0.25x RC
74.8 Ancient_Cushitic_N
23.8 Saudi
1.4 Levant_Beirut_IAIII_Egyptian

nee4speed111
12-28-2021, 12:04 AM
Interesting, perhaps an artifact of nmonte whereby unadmixed ancient pop's don't register but modern populations with that admixture do show up. Decided to model myself and the Sudanese Coptic average as a 2 way mix between Late period Egyptians and the Nubians from Sudan, fit doesn't seem too bad considering there are only 2 source pops.

Target: Nee4speed_scaled
Distance: 2.3757% / 0.02375736 | ADC: 0.25x RC
90.0 EGY_Late_Period
10.0 Sudan_MA_Kulubnarti

Target: SudaneseCopts_scaled
Distance: 1.8098% / 0.01809847 | ADC: 0.25x RC
86.6 EGY_Late_Period
13.4 Sudan_MA_Kulubnarti

drobbah
12-28-2021, 12:27 AM
Those MA Nubians are a mixture largely between Cushitic ancestry ,Dinka-like Nilo-Saharan ancestry and Egyptian ancestry. So I decided to use those samples to run you,the IA Egyptian & the Sudanese Copt and this what I got:


Target: Sudanese_Copt
Distance: 1.8417% / 0.01841694
93.4 EGY_Late_Period
4.4 Dinka
1.6 Ancient_Cushitic_N:KEN_Pastoral_N
0.6 Ancient_Cushitic_N:KEN_Pastoral_N_Elmenteitan

Target: Copt1_scaled
Distance: 2.4042% / 0.02404218
94.8 EGY_Late_Period
2.8 Dinka
2.4 Ancient_Cushitic_N:KEN_Pastoral_N

Target: Levant_Beirut_IAIII_Egyptian:SFI-43
Distance: 2.7201% / 0.02720090
97.2 EGY_Late_Period
2.8 Ancient_Cushitic_N:KEN_Pastoral_N

The IA Egyptian only gets Cushitic-like ancestry which is very interesting while the Sudanese Copt and you have both Nilo-Saharan and Cushitic ancestry. The Sudanese copt has elevated Dinka which suggests recent admixture from the local Sudanese population


Those 2 MA Nubian samples from earlier in comparison

Target: Kulubnarti_MA_MA:I6253
Distance: 3.8658% / 0.03865846
55.8 Ancient_Cushitic_N:KEN_Pastoral_N
31.8 EGY_Late_Period
12.4 Dinka

Target: Kulubnarti_MA_MA:I6252
Distance: 3.5664% / 0.03566410
39.2 Ancient_Cushitic_N:KEN_Pastoral_N
34.0 EGY_Late_Period
26.8 Dinka

Mnemonics
12-28-2021, 10:25 AM
Popping those new Kulubnarti samples into the models for Somalis seems to really improve the models and account for the excess Iran_ChL type ancestry.





left pops:
SomaliHigh
Kenya_PastoralIA
Kulubnarti_MA
Morocco_EN

right pops:
Cameroon_ShumLaka_All
Taiwan_Hanben_IA
Anatolia_N
Iran_N
Russia_Steppe_Eneolithic
Israel_C
Kenya_PastoralN
Baqah
Iberomaurusian
Serbia_Mesolithic_IronGates
Alalakh_MLBA
Natufian

0 SomaliHigh 3
1 Kenya_PastoralIA 3
2 Kulubnarti_MA 43
3 Morocco_EN 3
4 Cameroon_ShumLaka_All 4
5 Taiwan_Hanben_IA 34
6 Anatolia_N 25
7 Iran_N 4
8 Russia_Steppe_Eneolithic 3
9 Israel_C 21
10 Kenya_PastoralN 6
11 Baqah 19
12 Iberomaurusian 6
13 Serbia_Mesolithic_IronGates 33
14 Alalakh_MLBA 25
15 Natufian 6
jackknife block size: 0.050
snps: 1150389 indivs: 238
number of blocks for block jackknife: 714
## ncols: 1150389
coverage: SomaliHigh 1039653
coverage: Kenya_PastoralIA 654056
coverage: Kulubnarti_MA 1108875
coverage: Morocco_EN 653097
coverage: Cameroon_ShumLaka_All 1144636
coverage: Taiwan_Hanben_IA 1138612
coverage: Anatolia_N 1121996
coverage: Iran_N 1002874
coverage: Russia_Steppe_Eneolithic 1008216
coverage: Israel_C 1049667
coverage: Kenya_PastoralN 1034924
coverage: Baqah 1124280
coverage: Iberomaurusian 1088044
coverage: Serbia_Mesolithic_IronGates 1125061
coverage: Alalakh_MLBA 1125915
coverage: Natufian 529354
Effective number of blocks: 628.309
numsnps used: 244695
codimension 1
f4info:
f4rank: 2 dof: 9 chisq: 8.017 tail: 0.532413048 dofdiff: 11 chisqdiff: -8.017 taildiff: 1
B:
scale 1.000 1.000
Taiwan_Hanben_IA 0.510 0.329
Anatolia_N 0.573 0.728
Iran_N 0.459 0.617
Russia_Steppe_Eneolithic 0.571 0.522
Israel_C 0.576 0.737
Kenya_PastoralN 0.294 0.107
Baqah 0.547 0.700
Iberomaurusian 2.787 -2.799
Serbia_Mesolithic_IronGates 0.637 0.475
Alalakh_MLBA 0.549 0.718
Natufian 0.827 0.296
A:
scale 147.480 394.444
Kenya_PastoralIA -0.619 -1.191
Kulubnarti_MA 0.612 1.247
Morocco_EN 1.498 -0.161


full rank
f4info:
f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 9 chisqdiff: 8.017 taildiff: 0.532413048
B:
scale 235.210 251.391 95.657
Taiwan_Hanben_IA -0.862 0.776 0.490
Anatolia_N -1.151 1.181 0.541
Iran_N -0.956 0.972 0.438
Russia_Steppe_Eneolithic -1.042 1.008 0.541
Israel_C -1.154 1.196 0.546
Kenya_PastoralN -0.456 0.389 0.292
Baqah -1.090 1.139 0.521
Iberomaurusian -0.830 0.677 2.832
Serbia_Mesolithic_IronGates -1.002 1.070 0.616
Alalakh_MLBA -1.152 1.129 0.514
Natufian -1.088 1.133 0.815
A:
scale 1.732 1.732 1.732
Kenya_PastoralIA 1.732 0.000 0.000
Kulubnarti_MA 0.000 1.732 0.000
Morocco_EN 0.000 0.000 1.732


best coefficients: 0.505 0.484 0.011
Jackknife mean: 0.504636998 0.484253680 0.011109322
std. errors: 0.026 0.028 0.008

error covariance (* 1,000,000)
679 -689 10
-689 757 -68
10 -68 57


summ: SomaliHigh 3 0.532413 0.505 0.484 0.011 679 -689 10 757 -68 ...
57

fixed pat wt dof chisq tail prob
000 0 9 8.017 0.532413 0.505 0.484 0.011
001 1 10 1092.572 0 -0.193 1.193 0.000 infeasible
010 1 10 204.557 0 0.965 0.000 0.035
100 1 10 453.288 0 0.000 0.997 0.003
011 2 11 198.079 0 1.000 0.000 0.000
101 2 11 439.247 0 0.000 1.000 0.000
110 2 11 4369.220 0 0.000 0.000 1.000
best pat: 000 0.532413 - -
best pat: 010 1.80723e-38 chi(nested): 196.540 p-value for nested model: 1.18817e-44
best pat: 011 1.86171e-36 chi(nested): -6.478 p-value for nested model: -nan

coeffs: 0.505 0.484 0.011

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Kenya_PastoralIA Taiwan_Hanben_IA -0.003664 -9.745808
details: Kulubnarti_MA Taiwan_Hanben_IA 0.003085 13.596723
details: Morocco_EN Taiwan_Hanben_IA 0.005120 13.216185
dscore: Taiwan_Hanben_IA f4: -0.000301 Z: -1.171201

details: Kenya_PastoralIA Anatolia_N -0.004893 -12.427475
details: Kulubnarti_MA Anatolia_N 0.004698 18.960542
details: Morocco_EN Anatolia_N 0.005660 14.703723
dscore: Anatolia_N f4: -0.000135 Z: -0.490725

details: Kenya_PastoralIA Iran_N -0.004066 -9.778264
details: Kulubnarti_MA Iran_N 0.003867 15.552593
details: Morocco_EN Iran_N 0.004577 10.466497
dscore: Iran_N f4: -0.000132 Z: -0.465307

details: Kenya_PastoralIA Russia_Steppe_Eneolithic -0.004429 -10.570556
details: Kulubnarti_MA Russia_Steppe_Eneolithic 0.004011 15.945500
details: Morocco_EN Russia_Steppe_Eneolithic 0.005659 13.243106
dscore: Russia_Steppe_Eneolithic f4: -0.000234 Z: -0.814034

details: Kenya_PastoralIA Israel_C -0.004906 -12.024495
details: Kulubnarti_MA Israel_C 0.004757 18.889138
details: Morocco_EN Israel_C 0.005704 14.783274
dscore: Israel_C f4: -0.000113 Z: -0.397489

details: Kenya_PastoralIA Kenya_PastoralN -0.001940 -6.033708
details: Kulubnarti_MA Kenya_PastoralN 0.001546 8.767705
details: Morocco_EN Kenya_PastoralN 0.003049 9.858653
dscore: Kenya_PastoralN f4: -0.000198 Z: -0.929267

details: Kenya_PastoralIA Baqah -0.004636 -12.002785
details: Kulubnarti_MA Baqah 0.004532 18.997813
details: Morocco_EN Baqah 0.005446 14.744540
dscore: Baqah f4: -0.000088 Z: -0.328666

details: Kenya_PastoralIA Iberomaurusian -0.003527 -8.749615
details: Kulubnarti_MA Iberomaurusian 0.002692 11.529383
details: Morocco_EN Iberomaurusian 0.029605 62.488454
dscore: Iberomaurusian f4: -0.000153 Z: -0.555583

details: Kenya_PastoralIA Serbia_Mesolithic_IronGates -0.004260 -11.064527
details: Kulubnarti_MA Serbia_Mesolithic_IronGates 0.004257 17.269805
details: Morocco_EN Serbia_Mesolithic_IronGates 0.006442 15.900717
dscore: Serbia_Mesolithic_IronGates f4: -0.000021 Z: -0.076373

details: Kenya_PastoralIA Alalakh_MLBA -0.004899 -12.596118
details: Kulubnarti_MA Alalakh_MLBA 0.004492 18.635892
details: Morocco_EN Alalakh_MLBA 0.005369 14.383504
dscore: Alalakh_MLBA f4: -0.000241 Z: -0.888675

details: Kenya_PastoralIA Natufian -0.004626 -9.398190
details: Kulubnarti_MA Natufian 0.004509 15.320407
details: Morocco_EN Natufian 0.008524 16.725086
dscore: Natufian f4: -0.000060 Z: -0.180804

gendstat: Cameroon_ShumLaka_All Taiwan_Hanben_IA -1.171
gendstat: Cameroon_ShumLaka_All Anatolia_N -0.491
gendstat: Cameroon_ShumLaka_All Iran_N -0.465
gendstat: Cameroon_ShumLaka_All Russia_Steppe_Eneolithic -0.814
gendstat: Cameroon_ShumLaka_All Israel_C -0.397
gendstat: Cameroon_ShumLaka_All Kenya_PastoralN -0.929
gendstat: Cameroon_ShumLaka_All Baqah -0.329
gendstat: Cameroon_ShumLaka_All Iberomaurusian -0.556
gendstat: Cameroon_ShumLaka_All Serbia_Mesolithic_IronGates -0.076
gendstat: Cameroon_ShumLaka_All Alalakh_MLBA -0.889
gendstat: Cameroon_ShumLaka_All Natufian -0.181
gendstat: Taiwan_Hanben_IA Anatolia_N 0.915
gendstat: Taiwan_Hanben_IA Iran_N 0.786
gendstat: Taiwan_Hanben_IA Russia_Steppe_Eneolithic 0.321
gendstat: Taiwan_Hanben_IA Israel_C 0.979
gendstat: Taiwan_Hanben_IA Kenya_PastoralN 0.500
gendstat: Taiwan_Hanben_IA Baqah 1.231
gendstat: Taiwan_Hanben_IA Iberomaurusian 0.635
gendstat: Taiwan_Hanben_IA Serbia_Mesolithic_IronGates 1.418
gendstat: Taiwan_Hanben_IA Alalakh_MLBA 0.346
gendstat: Taiwan_Hanben_IA Natufian 0.870
gendstat: Anatolia_N Iran_N 0.018
gendstat: Anatolia_N Russia_Steppe_Eneolithic -0.533
gendstat: Anatolia_N Israel_C 0.197
gendstat: Anatolia_N Kenya_PastoralN -0.317
gendstat: Anatolia_N Baqah 0.463
gendstat: Anatolia_N Iberomaurusian -0.074
gendstat: Anatolia_N Serbia_Mesolithic_IronGates 0.798
gendstat: Anatolia_N Alalakh_MLBA -1.135
gendstat: Anatolia_N Natufian 0.319
gendstat: Iran_N Russia_Steppe_Eneolithic -0.437
gendstat: Iran_N Israel_C 0.087
gendstat: Iran_N Kenya_PastoralN -0.281
gendstat: Iran_N Baqah 0.230
gendstat: Iran_N Iberomaurusian -0.075
gendstat: Iran_N Serbia_Mesolithic_IronGates 0.506
gendstat: Iran_N Alalakh_MLBA -0.578
gendstat: Iran_N Natufian 0.240
gendstat: Russia_Steppe_Eneolithic Israel_C 0.607
gendstat: Russia_Steppe_Eneolithic Kenya_PastoralN 0.153
gendstat: Russia_Steppe_Eneolithic Baqah 0.827
gendstat: Russia_Steppe_Eneolithic Iberomaurusian 0.304
gendstat: Russia_Steppe_Eneolithic Serbia_Mesolithic_IronGates 1.130
gendstat: Russia_Steppe_Eneolithic Alalakh_MLBA -0.044
gendstat: Russia_Steppe_Eneolithic Natufian 0.604
gendstat: Israel_C Kenya_PastoralN -0.416
gendstat: Israel_C Baqah 0.211
gendstat: Israel_C Iberomaurusian -0.167
gendstat: Israel_C Serbia_Mesolithic_IronGates 0.571
gendstat: Israel_C Alalakh_MLBA -1.117
gendstat: Israel_C Natufian 0.221
gendstat: Kenya_PastoralN Baqah 0.580
gendstat: Kenya_PastoralN Iberomaurusian 0.198
gendstat: Kenya_PastoralN Serbia_Mesolithic_IronGates 0.870
gendstat: Kenya_PastoralN Alalakh_MLBA -0.226
gendstat: Kenya_PastoralN Natufian 0.513
gendstat: Baqah Iberomaurusian -0.287
gendstat: Baqah Serbia_Mesolithic_IronGates 0.467
gendstat: Baqah Alalakh_MLBA -1.700
gendstat: Baqah Natufian 0.120
gendstat: Iberomaurusian Serbia_Mesolithic_IronGates 0.550
gendstat: Iberomaurusian Alalakh_MLBA -0.395
gendstat: Iberomaurusian Natufian 0.322
gendstat: Serbia_Mesolithic_IronGates Alalakh_MLBA -1.483
gendstat: Serbia_Mesolithic_IronGates Natufian -0.151
gendstat: Alalakh_MLBA Natufian 0.761


left pops:
SomaliHigh
Kenya_PastoralIA
Kulubnarti_MA
Iberomaurusian

right pops:
DevilsGate_N
Cameroon_SMA.SG
South_Africa_2000BP
Yana_UP
Anatolia_N.SG
Bahamas_SouthAndros_Ceramic.SG
CHG
Nepal_Chokhopani_2700BP.SG
Iran_TepeAbdulHosein_N.SG
Iran_Wezmeh_N.SG
Ekven_IA.SG
BachoKiro
Kostenki14
Russia_Afanasievo.SG
Rome_Imperial
Guanche
Lebanon_MBA.SG
Iberia_HG
Greece_Logkas_MBA.SG
Mota
EgyptianAnc_o2
ZlatyKun
Swiss_HG

0 SomaliHigh 3
1 Kenya_PastoralIA 3
2 Kulubnarti_MA 43
3 Iberomaurusian 6
4 DevilsGate_N 4
5 Cameroon_SMA.SG 2
6 South_Africa_2000BP 4
7 Yana_UP 2
8 Anatolia_N.SG 5
9 Bahamas_SouthAndros_Ceramic.SG 4
10 CHG 2
11 Nepal_Chokhopani_2700BP.SG 1
12 Iran_TepeAbdulHosein_N.SG 3
13 Iran_Wezmeh_N.SG 1
14 Ekven_IA.SG 10
15 BachoKiro 3
16 Kostenki14 1
17 Russia_Afanasievo.SG 2
18 Rome_Imperial 43
19 Guanche 4
20 Lebanon_MBA.SG 5
21 Iberia_HG 2
22 Greece_Logkas_MBA.SG 2
23 Mota 1
24 EgyptianAnc_o2 1
25 ZlatyKun 1
26 Swiss_HG 1
jackknife block size: 0.050
snps: 1150461 indivs: 159
number of blocks for block jackknife: 714
## ncols: 1150461
coverage: SomaliHigh 1039653
coverage: Kenya_PastoralIA 654056
coverage: Kulubnarti_MA 1108875
coverage: Iberomaurusian 1088044
coverage: DevilsGate_N 1134715
coverage: Cameroon_SMA.SG 1148760
coverage: South_Africa_2000BP 1135129
coverage: Yana_UP 1135189
coverage: Anatolia_N.SG 1056084
coverage: Bahamas_SouthAndros_Ceramic.SG 1150077
coverage: CHG 1134595
coverage: Nepal_Chokhopani_2700BP.SG 1147408
coverage: Iran_TepeAbdulHosein_N.SG 1061032
coverage: Iran_Wezmeh_N.SG 1148603
coverage: Ekven_IA.SG 1144810
coverage: BachoKiro 990561
coverage: Kostenki14 1035815
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Guanche 1140173
coverage: Lebanon_MBA.SG 1138714
coverage: Iberia_HG 1042845
coverage: Greece_Logkas_MBA.SG 1149733
coverage: Mota 1134612
coverage: EgyptianAnc_o2 938490
coverage: ZlatyKun 1120502
coverage: Swiss_HG 1130733
Effective number of blocks: 632.477
numsnps used: 446049
codimension 1
f4info:
f4rank: 2 dof: 20 chisq: 12.647 tail: 0.892025097 dofdiff: 22 chisqdiff: -12.647 taildiff: 1
B:
scale 1.000 1.000
Cameroon_SMA.SG 2.499 0.340
South_Africa_2000BP 2.730 0.192
Yana_UP -0.305 -0.186
Anatolia_N.SG -0.429 1.394
Bahamas_SouthAndros_Ceramic.SG -0.097 0.207
CHG -0.291 1.276
Nepal_Chokhopani_2700BP.SG -0.163 0.014
Iran_TepeAbdulHosein_N.SG -0.121 1.346
Iran_Wezmeh_N.SG 0.013 1.579
Ekven_IA.SG -0.184 0.164
BachoKiro 0.053 -0.528
Kostenki14 -0.422 -0.245
Russia_Afanasievo.SG -0.464 1.218
Rome_Imperial -0.478 1.451
Guanche -1.033 -2.294
Lebanon_MBA.SG -0.438 1.337
Iberia_HG -0.507 0.213
Greece_Logkas_MBA.SG -0.429 1.514
Mota 2.215 -0.334
EgyptianAnc_o2 -0.572 0.610
ZlatyKun 0.075 -0.142
Swiss_HG -0.541 0.227
A:
scale 532.844 1598.236
Kenya_PastoralIA 0.928 -0.718
Kulubnarti_MA -0.802 0.873
Iberomaurusian -1.223 -1.312


full rank
f4info:
f4rank: 3 dof: 0 chisq: 0.000 tail: 1 dofdiff: 20 chisqdiff: 12.647 taildiff: 0.892025097
B:
scale 538.202 607.633 412.238
Cameroon_SMA.SG 2.274 -2.147 -2.567
South_Africa_2000BP 2.677 -2.337 -2.710
Yana_UP -0.182 0.266 0.286
Anatolia_N.SG -0.452 1.060 -0.032
Bahamas_SouthAndros_Ceramic.SG -0.090 0.208 -0.026
CHG -0.491 0.777 -0.214
Nepal_Chokhopani_2700BP.SG -0.058 0.215 0.120
Iran_TepeAbdulHosein_N.SG -0.428 0.593 -0.433
Iran_Wezmeh_N.SG -0.286 0.607 -0.600
Ekven_IA.SG -0.260 0.221 0.050
BachoKiro 0.328 -0.125 0.087
Kostenki14 -0.217 0.390 0.428
Russia_Afanasievo.SG -0.649 0.902 -0.033
Rome_Imperial -0.695 1.007 -0.072
Guanche -0.344 0.246 1.668
Lebanon_MBA.SG -0.726 0.866 -0.112
Iberia_HG -0.314 0.694 0.408
Greece_Logkas_MBA.SG -0.676 0.979 -0.153
Mota 2.430 -1.988 -1.999
EgyptianAnc_o2 -0.577 0.821 0.270
ZlatyKun 0.249 -0.007 -0.056
Swiss_HG -0.528 0.634 0.349
A:
scale 1.732 1.732 1.732
Kenya_PastoralIA 1.732 0.000 0.000
Kulubnarti_MA 0.000 1.732 0.000
Iberomaurusian 0.000 0.000 1.732


best coefficients: 0.477 0.471 0.053
Jackknife mean: 0.476379228 0.470488417 0.053132355
std. errors: 0.023 0.037 0.027

error covariance (* 1,000,000)
516 -553 37
-553 1341 -788
37 -788 751


summ: SomaliHigh 3 0.892025 0.476 0.470 0.053 516 -553 37 1341 -788 ...
751

fixed pat wt dof chisq tail prob
000 0 20 12.647 0.892025 0.477 0.471 0.053
001 1 21 16.549 0.738079 0.474 0.526 0.000
010 1 21 123.925 1.35437e-16 0.679 0.000 0.321
100 1 21 497.697 0 0.000 1.061 -0.061 infeasible
011 2 22 269.931 0 1.000 0.000 0.000
101 2 22 501.540 0 0.000 1.000 0.000
110 2 22 923.880 0 0.000 0.000 1.000
best pat: 000 0.892025 - -
best pat: 001 0.738079 chi(nested): 3.902 p-value for nested model: 0.0482296
best pat: 011 1.44846e-44 chi(nested): 253.382 p-value for nested model: 4.75476e-57

coeffs: 0.477 0.471 0.053

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Kenya_PastoralIA Cameroon_SMA.SG 0.004226 9.708057
details: Kulubnarti_MA Cameroon_SMA.SG -0.003534 -12.786822
details: Iberomaurusian Cameroon_SMA.SG -0.006226 -15.665270
dscore: Cameroon_SMA.SG f4: 0.000023 Z: 0.077265

details: Kenya_PastoralIA South_Africa_2000BP 0.004973 11.457990
details: Kulubnarti_MA South_Africa_2000BP -0.003846 -13.903579
details: Iberomaurusian South_Africa_2000BP -0.006574 -16.519666
dscore: South_Africa_2000BP f4: 0.000214 Z: 0.718383

details: Kenya_PastoralIA Yana_UP -0.000338 -0.997274
details: Kulubnarti_MA Yana_UP 0.000438 1.975136
details: Iberomaurusian Yana_UP 0.000693 1.907148
dscore: Yana_UP f4: 0.000081 Z: 0.346972

details: Kenya_PastoralIA Anatolia_N.SG -0.000840 -2.328265
details: Kulubnarti_MA Anatolia_N.SG 0.001745 7.596516
details: Iberomaurusian Anatolia_N.SG -0.000078 -0.230911
dscore: Anatolia_N.SG f4: 0.000417 Z: 1.651905

details: Kenya_PastoralIA Bahamas_SouthAndros_Ceramic.SG -0.000168 -0.559163
details: Kulubnarti_MA Bahamas_SouthAndros_Ceramic.SG 0.000342 1.724875
details: Iberomaurusian Bahamas_SouthAndros_Ceramic.SG -0.000064 -0.204521
dscore: Bahamas_SouthAndros_Ceramic.SG f4: 0.000077 Z: 0.372544

details: Kenya_PastoralIA CHG -0.000912 -2.503411
details: Kulubnarti_MA CHG 0.001278 5.523903
details: Iberomaurusian CHG -0.000519 -1.433071
dscore: CHG f4: 0.000140 Z: 0.560078

details: Kenya_PastoralIA Nepal_Chokhopani_2700BP.SG -0.000107 -0.306991
details: Kulubnarti_MA Nepal_Chokhopani_2700BP.SG 0.000354 1.565129
details: Iberomaurusian Nepal_Chokhopani_2700BP.SG 0.000291 0.845627
dscore: Nepal_Chokhopani_2700BP.SG f4: 0.000131 Z: 0.544664

details: Kenya_PastoralIA Iran_TepeAbdulHosein_N.SG -0.000795 -2.239152
details: Kulubnarti_MA Iran_TepeAbdulHosein_N.SG 0.000975 4.319983
details: Iberomaurusian Iran_TepeAbdulHosein_N.SG -0.001051 -3.080035
dscore: Iran_TepeAbdulHosein_N.SG f4: 0.000025 Z: 0.101197

details: Kenya_PastoralIA Iran_Wezmeh_N.SG -0.000531 -1.284480
details: Kulubnarti_MA Iran_Wezmeh_N.SG 0.000999 3.592950
details: Iberomaurusian Iran_Wezmeh_N.SG -0.001454 -3.568624
dscore: Iran_Wezmeh_N.SG f4: 0.000141 Z: 0.480991

details: Kenya_PastoralIA Ekven_IA.SG -0.000484 -1.732524
details: Kulubnarti_MA Ekven_IA.SG 0.000363 2.057048
details: Iberomaurusian Ekven_IA.SG 0.000121 0.430567
dscore: Ekven_IA.SG f4: -0.000053 Z: -0.273844

details: Kenya_PastoralIA BachoKiro 0.000609 1.755902
details: Kulubnarti_MA BachoKiro -0.000206 -0.932900
details: Iberomaurusian BachoKiro 0.000211 0.612637
dscore: BachoKiro f4: 0.000205 Z: 0.856613

details: Kenya_PastoralIA Kostenki14 -0.000404 -0.965060
details: Kulubnarti_MA Kostenki14 0.000641 2.504575
details: Iberomaurusian Kostenki14 0.001038 2.489319
dscore: Kostenki14 f4: 0.000164 Z: 0.571273

details: Kenya_PastoralIA Russia_Afanasievo.SG -0.001206 -3.278836
details: Kulubnarti_MA Russia_Afanasievo.SG 0.001485 6.549207
details: Iberomaurusian Russia_Afanasievo.SG -0.000080 -0.226308
dscore: Russia_Afanasievo.SG f4: 0.000120 Z: 0.475325

details: Kenya_PastoralIA Rome_Imperial -0.001290 -4.368374
details: Kulubnarti_MA Rome_Imperial 0.001658 8.595427
details: Iberomaurusian Rome_Imperial -0.000175 -0.611604
dscore: Rome_Imperial f4: 0.000156 Z: 0.749061

details: Kenya_PastoralIA Guanche -0.000639 -1.725488
details: Kulubnarti_MA Guanche 0.000405 1.676668
details: Iberomaurusian Guanche 0.004046 10.447511
dscore: Guanche f4: 0.000098 Z: 0.381318

details: Kenya_PastoralIA Lebanon_MBA.SG -0.001349 -3.937019
details: Kulubnarti_MA Lebanon_MBA.SG 0.001425 6.520171
details: Iberomaurusian Lebanon_MBA.SG -0.000273 -0.826035
dscore: Lebanon_MBA.SG f4: 0.000014 Z: 0.057370

details: Kenya_PastoralIA Iberia_HG -0.000584 -1.589235
details: Kulubnarti_MA Iberia_HG 0.001141 4.748390
details: Iberomaurusian Iberia_HG 0.000989 2.543945
dscore: Iberia_HG f4: 0.000311 Z: 1.223918

details: Kenya_PastoralIA Greece_Logkas_MBA.SG -0.001257 -3.525946
details: Kulubnarti_MA Greece_Logkas_MBA.SG 0.001610 6.986277
details: Iberomaurusian Greece_Logkas_MBA.SG -0.000372 -1.063236
dscore: Greece_Logkas_MBA.SG f4: 0.000140 Z: 0.557844

details: Kenya_PastoralIA Mota 0.004516 9.878802
details: Kulubnarti_MA Mota -0.003271 -11.076660
details: Iberomaurusian Mota -0.004849 -11.445701
dscore: Mota f4: 0.000357 Z: 1.140473

details: Kenya_PastoralIA EgyptianAnc_o2 -0.001072 -2.584654
details: Kulubnarti_MA EgyptianAnc_o2 0.001351 4.825933
details: Iberomaurusian EgyptianAnc_o2 0.000655 1.569345
dscore: EgyptianAnc_o2 f4: 0.000159 Z: 0.538363

details: Kenya_PastoralIA ZlatyKun 0.000463 1.103854
details: Kulubnarti_MA ZlatyKun -0.000012 -0.044535
details: Iberomaurusian ZlatyKun -0.000137 -0.337523
dscore: ZlatyKun f4: 0.000208 Z: 0.717276

details: Kenya_PastoralIA Swiss_HG -0.000981 -2.420688
details: Kulubnarti_MA Swiss_HG 0.001043 3.743163
details: Iberomaurusian Swiss_HG 0.000848 1.891979
dscore: Swiss_HG f4: 0.000068 Z: 0.232680

gendstat: DevilsGate_N Cameroon_SMA.SG 0.077
gendstat: DevilsGate_N South_Africa_2000BP 0.718
gendstat: DevilsGate_N Yana_UP 0.347
gendstat: DevilsGate_N Anatolia_N.SG 1.652
gendstat: DevilsGate_N Bahamas_SouthAndros_Ceramic.SG 0.373
gendstat: DevilsGate_N CHG 0.560
gendstat: DevilsGate_N Nepal_Chokhopani_2700BP.SG 0.545
gendstat: DevilsGate_N Iran_TepeAbdulHosein_N.SG 0.101
gendstat: DevilsGate_N Iran_Wezmeh_N.SG 0.481
gendstat: DevilsGate_N Ekven_IA.SG -0.274
gendstat: DevilsGate_N BachoKiro 0.857
gendstat: DevilsGate_N Kostenki14 0.571
gendstat: DevilsGate_N Russia_Afanasievo.SG 0.475
gendstat: DevilsGate_N Rome_Imperial 0.749
gendstat: DevilsGate_N Guanche 0.381
gendstat: DevilsGate_N Lebanon_MBA.SG 0.057
gendstat: DevilsGate_N Iberia_HG 1.224
gendstat: DevilsGate_N Greece_Logkas_MBA.SG 0.558
gendstat: DevilsGate_N Mota 1.140
gendstat: DevilsGate_N EgyptianAnc_o2 0.538
gendstat: DevilsGate_N ZlatyKun 0.717
gendstat: DevilsGate_N Swiss_HG 0.233
gendstat: Cameroon_SMA.SG South_Africa_2000BP 1.050
gendstat: Cameroon_SMA.SG Yana_UP 0.198
gendstat: Cameroon_SMA.SG Anatolia_N.SG 1.260
gendstat: Cameroon_SMA.SG Bahamas_SouthAndros_Ceramic.SG 0.182
gendstat: Cameroon_SMA.SG CHG 0.364
gendstat: Cameroon_SMA.SG Nepal_Chokhopani_2700BP.SG 0.326
gendstat: Cameroon_SMA.SG Iran_TepeAbdulHosein_N.SG 0.006
gendstat: Cameroon_SMA.SG Iran_Wezmeh_N.SG 0.353
gendstat: Cameroon_SMA.SG Ekven_IA.SG -0.253
gendstat: Cameroon_SMA.SG BachoKiro 0.637
gendstat: Cameroon_SMA.SG Kostenki14 0.422
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG 0.311
gendstat: Cameroon_SMA.SG Rome_Imperial 0.473
gendstat: Cameroon_SMA.SG Guanche 0.247
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG -0.031
gendstat: Cameroon_SMA.SG Iberia_HG 0.934
gendstat: Cameroon_SMA.SG Greece_Logkas_MBA.SG 0.359
gendstat: Cameroon_SMA.SG Mota 1.362
gendstat: Cameroon_SMA.SG EgyptianAnc_o2 0.388
gendstat: Cameroon_SMA.SG ZlatyKun 0.585
gendstat: Cameroon_SMA.SG Swiss_HG 0.135
gendstat: South_Africa_2000BP Yana_UP -0.452
gendstat: South_Africa_2000BP Anatolia_N.SG 0.664
gendstat: South_Africa_2000BP Bahamas_SouthAndros_Ceramic.SG -0.472
gendstat: South_Africa_2000BP CHG -0.235
gendstat: South_Africa_2000BP Nepal_Chokhopani_2700BP.SG -0.252
gendstat: South_Africa_2000BP Iran_TepeAbdulHosein_N.SG -0.634
gendstat: South_Africa_2000BP Iran_Wezmeh_N.SG -0.223
gendstat: South_Africa_2000BP Ekven_IA.SG -0.906
gendstat: South_Africa_2000BP BachoKiro -0.032
gendstat: South_Africa_2000BP Kostenki14 -0.153
gendstat: South_Africa_2000BP Russia_Afanasievo.SG -0.305
gendstat: South_Africa_2000BP Rome_Imperial -0.208
gendstat: South_Africa_2000BP Guanche -0.389
gendstat: South_Africa_2000BP Lebanon_MBA.SG -0.672
gendstat: South_Africa_2000BP Iberia_HG 0.315
gendstat: South_Africa_2000BP Greece_Logkas_MBA.SG -0.229
gendstat: South_Africa_2000BP Mota 0.601
gendstat: South_Africa_2000BP EgyptianAnc_o2 -0.158
gendstat: South_Africa_2000BP ZlatyKun -0.018
gendstat: South_Africa_2000BP Swiss_HG -0.436
gendstat: Yana_UP Anatolia_N.SG 1.441
gendstat: Yana_UP Bahamas_SouthAndros_Ceramic.SG -0.017
gendstat: Yana_UP CHG 0.238
gendstat: Yana_UP Nepal_Chokhopani_2700BP.SG 0.180
gendstat: Yana_UP Iran_TepeAbdulHosein_N.SG -0.226
gendstat: Yana_UP Iran_Wezmeh_N.SG 0.207
gendstat: Yana_UP Ekven_IA.SG -0.604
gendstat: Yana_UP BachoKiro 0.494
gendstat: Yana_UP Kostenki14 0.295
gendstat: Yana_UP Russia_Afanasievo.SG 0.162
gendstat: Yana_UP Rome_Imperial 0.392
gendstat: Yana_UP Guanche 0.066
gendstat: Yana_UP Lebanon_MBA.SG -0.300
gendstat: Yana_UP Iberia_HG 0.955
gendstat: Yana_UP Greece_Logkas_MBA.SG 0.245
gendstat: Yana_UP Mota 0.868
gendstat: Yana_UP EgyptianAnc_o2 0.272
gendstat: Yana_UP ZlatyKun 0.455
gendstat: Yana_UP Swiss_HG -0.048
gendstat: Anatolia_N.SG Bahamas_SouthAndros_Ceramic.SG -1.428
gendstat: Anatolia_N.SG CHG -1.220
gendstat: Anatolia_N.SG Nepal_Chokhopani_2700BP.SG -1.023
gendstat: Anatolia_N.SG Iran_TepeAbdulHosein_N.SG -1.676
gendstat: Anatolia_N.SG Iran_Wezmeh_N.SG -0.966
gendstat: Anatolia_N.SG Ekven_IA.SG -2.067
gendstat: Anatolia_N.SG BachoKiro -0.807
gendstat: Anatolia_N.SG Kostenki14 -0.899
gendstat: Anatolia_N.SG Russia_Afanasievo.SG -1.314
gendstat: Anatolia_N.SG Rome_Imperial -1.775
gendstat: Anatolia_N.SG Guanche -1.365
gendstat: Anatolia_N.SG Lebanon_MBA.SG -2.099
gendstat: Anatolia_N.SG Iberia_HG -0.460
gendstat: Anatolia_N.SG Greece_Logkas_MBA.SG -1.374
gendstat: Anatolia_N.SG Mota -0.179
gendstat: Anatolia_N.SG EgyptianAnc_o2 -1.027
gendstat: Anatolia_N.SG ZlatyKun -0.733
gendstat: Anatolia_N.SG Swiss_HG -1.321
gendstat: Bahamas_SouthAndros_Ceramic.SG CHG 0.261
gendstat: Bahamas_SouthAndros_Ceramic.SG Nepal_Chokhopani_2700BP.SG 0.208
gendstat: Bahamas_SouthAndros_Ceramic.SG Iran_TepeAbdulHosein_N.SG -0.219
gendstat: Bahamas_SouthAndros_Ceramic.SG Iran_Wezmeh_N.SG 0.231
gendstat: Bahamas_SouthAndros_Ceramic.SG Ekven_IA.SG -0.740
gendstat: Bahamas_SouthAndros_Ceramic.SG BachoKiro 0.498
gendstat: Bahamas_SouthAndros_Ceramic.SG Kostenki14 0.300
gendstat: Bahamas_SouthAndros_Ceramic.SG Russia_Afanasievo.SG 0.184
gendstat: Bahamas_SouthAndros_Ceramic.SG Rome_Imperial 0.413
gendstat: Bahamas_SouthAndros_Ceramic.SG Guanche 0.082
gendstat: Bahamas_SouthAndros_Ceramic.SG Lebanon_MBA.SG -0.283
gendstat: Bahamas_SouthAndros_Ceramic.SG Iberia_HG 0.932
gendstat: Bahamas_SouthAndros_Ceramic.SG Greece_Logkas_MBA.SG 0.272
gendstat: Bahamas_SouthAndros_Ceramic.SG Mota 0.901
gendstat: Bahamas_SouthAndros_Ceramic.SG EgyptianAnc_o2 0.289
gendstat: Bahamas_SouthAndros_Ceramic.SG ZlatyKun 0.442
gendstat: Bahamas_SouthAndros_Ceramic.SG Swiss_HG -0.033
gendstat: CHG Nepal_Chokhopani_2700BP.SG -0.031
gendstat: CHG Iran_TepeAbdulHosein_N.SG -0.501
gendstat: CHG Iran_Wezmeh_N.SG 0.004
gendstat: CHG Ekven_IA.SG -0.827
gendstat: CHG BachoKiro 0.237
gendstat: CHG Kostenki14 0.081
gendstat: CHG Russia_Afanasievo.SG -0.086
gendstat: CHG Rome_Imperial 0.091
gendstat: CHG Guanche -0.162
gendstat: CHG Lebanon_MBA.SG -0.594
gendstat: CHG Iberia_HG 0.683
gendstat: CHG Greece_Logkas_MBA.SG -0.001
gendstat: CHG Mota 0.644
gendstat: CHG EgyptianAnc_o2 0.068
gendstat: CHG ZlatyKun 0.227
gendstat: CHG Swiss_HG -0.250
gendstat: Nepal_Chokhopani_2700BP.SG Iran_TepeAbdulHosein_N.SG -0.367
gendstat: Nepal_Chokhopani_2700BP.SG Iran_Wezmeh_N.SG 0.031
gendstat: Nepal_Chokhopani_2700BP.SG Ekven_IA.SG -0.746
gendstat: Nepal_Chokhopani_2700BP.SG BachoKiro 0.260
gendstat: Nepal_Chokhopani_2700BP.SG Kostenki14 0.103
gendstat: Nepal_Chokhopani_2700BP.SG Russia_Afanasievo.SG -0.038
gendstat: Nepal_Chokhopani_2700BP.SG Rome_Imperial 0.105
gendstat: Nepal_Chokhopani_2700BP.SG Guanche -0.114
gendstat: Nepal_Chokhopani_2700BP.SG Lebanon_MBA.SG -0.433
gendstat: Nepal_Chokhopani_2700BP.SG Iberia_HG 0.595
gendstat: Nepal_Chokhopani_2700BP.SG Greece_Logkas_MBA.SG 0.033
gendstat: Nepal_Chokhopani_2700BP.SG Mota 0.630
gendstat: Nepal_Chokhopani_2700BP.SG EgyptianAnc_o2 0.087
gendstat: Nepal_Chokhopani_2700BP.SG ZlatyKun 0.237
gendstat: Nepal_Chokhopani_2700BP.SG Swiss_HG -0.198
gendstat: Iran_TepeAbdulHosein_N.SG Iran_Wezmeh_N.SG 0.443
gendstat: Iran_TepeAbdulHosein_N.SG Ekven_IA.SG -0.352
gendstat: Iran_TepeAbdulHosein_N.SG BachoKiro 0.672
gendstat: Iran_TepeAbdulHosein_N.SG Kostenki14 0.471
gendstat: Iran_TepeAbdulHosein_N.SG Russia_Afanasievo.SG 0.425
gendstat: Iran_TepeAbdulHosein_N.SG Rome_Imperial 0.718
gendstat: Iran_TepeAbdulHosein_N.SG Guanche 0.290
gendstat: Iran_TepeAbdulHosein_N.SG Lebanon_MBA.SG -0.054
gendstat: Iran_TepeAbdulHosein_N.SG Iberia_HG 1.113
gendstat: Iran_TepeAbdulHosein_N.SG Greece_Logkas_MBA.SG 0.490
gendstat: Iran_TepeAbdulHosein_N.SG Mota 1.032
gendstat: Iran_TepeAbdulHosein_N.SG EgyptianAnc_o2 0.489
gendstat: Iran_TepeAbdulHosein_N.SG ZlatyKun 0.627
gendstat: Iran_TepeAbdulHosein_N.SG Swiss_HG 0.147
gendstat: Iran_Wezmeh_N.SG Ekven_IA.SG -0.695
gendstat: Iran_Wezmeh_N.SG BachoKiro 0.211
gendstat: Iran_Wezmeh_N.SG Kostenki14 0.068
gendstat: Iran_Wezmeh_N.SG Russia_Afanasievo.SG -0.072
gendstat: Iran_Wezmeh_N.SG Rome_Imperial 0.062
gendstat: Iran_Wezmeh_N.SG Guanche -0.145
gendstat: Iran_Wezmeh_N.SG Lebanon_MBA.SG -0.483
gendstat: Iran_Wezmeh_N.SG Iberia_HG 0.556
gendstat: Iran_Wezmeh_N.SG Greece_Logkas_MBA.SG -0.004
gendstat: Iran_Wezmeh_N.SG Mota 0.621
gendstat: Iran_Wezmeh_N.SG EgyptianAnc_o2 0.058
gendstat: Iran_Wezmeh_N.SG ZlatyKun 0.198
gendstat: Iran_Wezmeh_N.SG Swiss_HG -0.218
gendstat: Ekven_IA.SG BachoKiro 1.079
gendstat: Ekven_IA.SG Kostenki14 0.790
gendstat: Ekven_IA.SG Russia_Afanasievo.SG 0.756
gendstat: Ekven_IA.SG Rome_Imperial 1.186
gendstat: Ekven_IA.SG Guanche 0.619
gendstat: Ekven_IA.SG Lebanon_MBA.SG 0.316
gendstat: Ekven_IA.SG Iberia_HG 1.539
gendstat: Ekven_IA.SG Greece_Logkas_MBA.SG 0.878
gendstat: Ekven_IA.SG Mota 1.308
gendstat: Ekven_IA.SG EgyptianAnc_o2 0.774
gendstat: Ekven_IA.SG ZlatyKun 0.920
gendstat: Ekven_IA.SG Swiss_HG 0.440
gendstat: BachoKiro Kostenki14 -0.139
gendstat: BachoKiro Russia_Afanasievo.SG -0.317
gendstat: BachoKiro Rome_Imperial -0.220
gendstat: BachoKiro Guanche -0.394
gendstat: BachoKiro Lebanon_MBA.SG -0.772
gendstat: BachoKiro Iberia_HG 0.401
gendstat: BachoKiro Greece_Logkas_MBA.SG -0.243
gendstat: BachoKiro Mota 0.487
gendstat: BachoKiro EgyptianAnc_o2 -0.149
gendstat: BachoKiro ZlatyKun 0.012
gendstat: BachoKiro Swiss_HG -0.453
gendstat: Kostenki14 Russia_Afanasievo.SG -0.155
gendstat: Kostenki14 Rome_Imperial -0.031
gendstat: Kostenki14 Guanche -0.232
gendstat: Kostenki14 Lebanon_MBA.SG -0.551
gendstat: Kostenki14 Iberia_HG 0.522
gendstat: Kostenki14 Greece_Logkas_MBA.SG -0.081
gendstat: Kostenki14 Mota 0.555
gendstat: Kostenki14 EgyptianAnc_o2 -0.015
gendstat: Kostenki14 ZlatyKun 0.137
gendstat: Kostenki14 Swiss_HG -0.303
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.211
gendstat: Russia_Afanasievo.SG Guanche -0.090
gendstat: Russia_Afanasievo.SG Lebanon_MBA.SG -0.524
gendstat: Russia_Afanasievo.SG Iberia_HG 0.808
gendstat: Russia_Afanasievo.SG Greece_Logkas_MBA.SG 0.086
gendstat: Russia_Afanasievo.SG Mota 0.706
gendstat: Russia_Afanasievo.SG EgyptianAnc_o2 0.147
gendstat: Russia_Afanasievo.SG ZlatyKun 0.292
gendstat: Russia_Afanasievo.SG Swiss_HG -0.195
gendstat: Rome_Imperial Guanche -0.304
gendstat: Rome_Imperial Lebanon_MBA.SG -1.105
gendstat: Rome_Imperial Iberia_HG 0.813
gendstat: Rome_Imperial Greece_Logkas_MBA.SG -0.104
gendstat: Rome_Imperial Mota 0.657
gendstat: Rome_Imperial EgyptianAnc_o2 0.014
gendstat: Rome_Imperial ZlatyKun 0.202
gendstat: Rome_Imperial Swiss_HG -0.376
gendstat: Guanche Lebanon_MBA.SG -0.398
gendstat: Guanche Iberia_HG 0.841
gendstat: Guanche Greece_Logkas_MBA.SG 0.174
gendstat: Guanche Mota 0.782
gendstat: Guanche EgyptianAnc_o2 0.218
gendstat: Guanche ZlatyKun 0.358
gendstat: Guanche Swiss_HG -0.110
gendstat: Lebanon_MBA.SG Iberia_HG 1.308
gendstat: Lebanon_MBA.SG Greece_Logkas_MBA.SG 0.651
gendstat: Lebanon_MBA.SG Mota 1.053
gendstat: Lebanon_MBA.SG EgyptianAnc_o2 0.610
gendstat: Lebanon_MBA.SG ZlatyKun 0.703
gendstat: Lebanon_MBA.SG Swiss_HG 0.209
gendstat: Iberia_HG Greece_Logkas_MBA.SG -0.702
gendstat: Iberia_HG Mota 0.134
gendstat: Iberia_HG EgyptianAnc_o2 -0.545
gendstat: Iberia_HG ZlatyKun -0.350
gendstat: Iberia_HG Swiss_HG -0.942
gendstat: Greece_Logkas_MBA.SG Mota 0.619
gendstat: Greece_Logkas_MBA.SG EgyptianAnc_o2 0.076
gendstat: Greece_Logkas_MBA.SG ZlatyKun 0.225
gendstat: Greece_Logkas_MBA.SG Swiss_HG -0.262
gendstat: Mota EgyptianAnc_o2 -0.544
gendstat: Mota ZlatyKun -0.444
gendstat: Mota Swiss_HG -0.798
gendstat: EgyptianAnc_o2 ZlatyKun 0.149
gendstat: EgyptianAnc_o2 Swiss_HG -0.299
gendstat: ZlatyKun Swiss_HG -0.424

drobbah
12-28-2021, 05:44 PM
Those MA Nubians are a mixture largely between Cushitic ancestry ,Dinka-like Nilo-Saharan ancestry and Egyptian ancestry. So I decided to use those samples to run you,the IA Egyptian & the Sudanese Copt and this what I got:


Target: Sudanese_Copt
Distance: 1.8417% / 0.01841694
93.4 EGY_Late_Period
4.4 Dinka
1.6 Ancient_Cushitic_N:KEN_Pastoral_N
0.6 Ancient_Cushitic_N:KEN_Pastoral_N_Elmenteitan

Target: Copt1_scaled
Distance: 2.4042% / 0.02404218
94.8 EGY_Late_Period
2.8 Dinka
2.4 Ancient_Cushitic_N:KEN_Pastoral_N

Target: Levant_Beirut_IAIII_Egyptian:SFI-43
Distance: 2.7201% / 0.02720090
97.2 EGY_Late_Period
2.8 Ancient_Cushitic_N:KEN_Pastoral_N

The IA Egyptian only gets Cushitic-like ancestry which is very interesting while the Sudanese Copt and you have both Nilo-Saharan and Cushitic ancestry. The Sudanese copt has elevated Dinka which suggests recent admixture from the local Sudanese population


Those 2 MA Nubian samples from earlier in comparison

Target: Kulubnarti_MA_MA:I6253
Distance: 3.8658% / 0.03865846
55.8 Ancient_Cushitic_N:KEN_Pastoral_N
31.8 EGY_Late_Period
12.4 Dinka

Target: Kulubnarti_MA_MA:I6252
Distance: 3.5664% / 0.03566410
39.2 Ancient_Cushitic_N:KEN_Pastoral_N
34.0 EGY_Late_Period
26.8 Dinka

So I decided to run all the individual Egyptian samples and they entirely lack the Cushitic found in the Copts & the S-43 sample.They overall prefer Dinka + Yoruba and some just preferring Yoruba as their sole SSA source


Target: Egyptian:3AJ137
Distance: 3.6414% / 0.03641425 | ADC: 0.25x RC
92.2 EGY_Late_Period
7.8 Yoruba

Target: Egyptian:8AJ136
Distance: 3.5676% / 0.03567559 | ADC: 0.25x RC
60.8 EGY_Late_Period
28.8 Saudi
6.2 Dinka
4.2 Yoruba

Target: Egyptian:10AJ137
Distance: 3.9621% / 0.03962072 | ADC: 0.25x RC
89.0 EGY_Late_Period
6.2 Yoruba
4.8 Dinka

Target: Egyptian:4AJ137
Distance: 3.6554% / 0.03655369 | ADC: 0.25x RC
87.8 EGY_Late_Period
11.0 Dinka
1.2 Yoruba

Target: Egyptian:10AJ137
Distance: 3.9621% / 0.03962072 | ADC: 0.25x RC
89.0 EGY_Late_Period
6.2 Yoruba
4.8 Dinka

Target: Egyptian:10AJ136
Distance: 4.0713% / 0.04071288 | ADC: 0.25x RC
85.6 EGY_Late_Period
7.4 Yoruba
7.0 Saudi

Awale
01-15-2022, 05:26 PM
Popping those new Kulubnarti samples into the models for Somalis seems to really improve the models and account for the excess Iran_ChL type ancestry.

You know I used to get weird models where Horners showed Ancient-Egyptian alongside or other than Ancient-Yemeni and made nothing of it as it didn't make much historical sense to me. It still doesn't. I don't believe there's much of any proof archaeologically or historically of migrations from Sudan into the Horn after the initial pastoralist dispersals that started a little before 3000 BCE (https://anthrogenica.com/showthread.php?22328-ADMIXTURE-is-precient-again-the-Ethio-Somali-component-and-the-Pastoral-Neolithic&p=779936#post779936) which might imply that whatever genetic diversity existed among early Cushites was possibly there from the start. And there's also the fact that, as far as I know, the Horn remains in the Neolithic until around 1000 BCE and beyond when ancient Yemenis begin to influence the region whereas North Sudan (Nubia and the Red Sea Hills) enters the Bronze Age and civilization era pretty much around 2500 BCE, nearly neck and neck with the Middle-East. The Kingdom of Kerma is nearly as old as Old Kingdom Egypt.

If continuous migrations from Sudan existed then you'd expect metallurgy to have spread across the Horn much earlier on. The same goes for things like monumental architecture, extensive global-trade and cities but that's seemingly not the case. Both the Somali coast and the Northern Highlands only begin exhibiting signs of this after 1000 BCE. Though, to be fair, Horner archaeology needs a lot of work.

But anyway, I ran a similar model to the kind Drobbah displayed for these Medieval Nubians using Somali-15 (https://anthrogenica.com/showthread.php?21050-When-did-the-Ethiosemites-receive-their-semitic-admixture&p=688668#post688668) as a proxy for Cushitic, the Ancient Egyptian samples plus the England-Near-Eastern-outlier sample for Ancient-Egyptian, Dinkas for Nilo-Saharan, al-Jawf Yemenis for Ancient-Yemeni, threw in Mota as well and got this for the modern Horner Cushitic, Ethiosemitic and Omotic samples:

https://i.imgur.com/LTfbeUC.png

I do wonder...

Update:

A perhaps better looking model without Nilo-Saharan:

https://i.imgur.com/NF94qkE.png

drobbah
01-15-2022, 09:10 PM
You know I used to get weird models where Horners showed Ancient-Egyptian alongside or other than Ancient-Yemeni and made nothing of it as it didn't make much historical sense to me. It still doesn't. I don't believe there's much of any proof archaeologically or historically of migrations from Sudan into the Horn after the initial pastoralist dispersals that started a little before 3000 BCE (https://anthrogenica.com/showthread.php?22328-ADMIXTURE-is-precient-again-the-Ethio-Somali-component-and-the-Pastoral-Neolithic&p=779936#post779936) which might imply that whatever genetic diversity existed among early Cushites was possibly there from the start. And there's also the fact that, as far as I know, the Horn remains in the Neolithic until around 1000 BCE and beyond when ancient Yemenis begin to influence the region whereas North Sudan (Nubia and the Red Sea Hills) enters the Bronze Age and civilization era pretty much around 2500 BCE, nearly neck and neck with the Middle-East. The Kingdom of Kerma is nearly as old as Old Kingdom Egypt.

If continuous migrations from Sudan existed then you'd expect metallurgy to have spread across the Horn much earlier on. The same goes for things like monumental architecture, extensive global-trade and cities but that's seemingly not the case. Both the Somali coast and the Northern Highlands only begin exhibiting signs of this after 1000 BCE. Though, to be fair, Horner archaeology needs a lot of work.

But anyway, I ran a similar model to the kind Drobbah displayed for these Medieval Nubians using Somali-15 (https://anthrogenica.com/showthread.php?21050-When-did-the-Ethiosemites-receive-their-semitic-admixture&p=688668#post688668) as a proxy for Cushitic, the Ancient Egyptian samples plus the England-Near-Eastern-outlier sample for Ancient-Egyptian, Dinkas for Nilo-Saharan, al-Jawf Yemenis for Ancient-Yemeni, threw in Mota as well and got this for the modern Horner Cushitic, Ethiosemitic and Omotic samples:

https://i.imgur.com/LTfbeUC.png

I do wonder...
I was mistaken to think Somali15 completely lacked Yemeni ancestry, they carry it just as not as much as the other G25 Somalis with some non-recently admixed individuals reaching the 11-12% mark.My father on the hand when I compare him not only to the G25 Somalis but also members on this forum consistently is the least Arabian admixed Somali sample I've seen so far.This is surprising as he has heightened Mota admixture and he has actual Oromo matches (I get a few aswell with a recent completely Shewan match which is pretty cool).One would expect someone with distant Oromo ancestry to have some Semitic ancestry as some of those Somali_Kenya Borana admixed samples do.This continues to puzzle me


Target: Somali:SOMALI15
Distance: 2.9787% / 0.02978660 | ADC: 0.25x RC
98.8 KEN_Pastoral_N
1.2 Yemenite

Target: Drobbah_Father
Distance: 1.8417% / 0.01841709 | ADC: 0.25x RC
90.4 KEN_Pastoral_N
9.6 KEN_Pastoral_IA


https://i.imgur.com/6w6J58L.jpg

My question to you is why do you think Yemeni ancestry in Somalis from Somalia/Somaliland proper is very heterogenous unlike let's say among the Amharas which is much more uniform?


Some of the Horners using my model
Target: Rendille
Distance: 1.6410% / 0.01641037 | ADC: 0.25x RC
65.2 KEN_Pastoral_N
34.8 KEN_Pastoral_IA

Target: Ethiopian_Wolayta
Distance: 1.5098% / 0.01509788 | ADC: 0.25x RC
69.4 KEN_Pastoral_N
20.8 ETH_4500BP
9.8 Yemenite

Target: Ethiopian_Amhara
Distance: 1.5970% / 0.01597047 | ADC: 0.25x RC
77.4 KEN_Pastoral_N
22.6 Yemenite

Target: Somali
Distance: 1.5006% / 0.01500615 | ADC: 0.25x RC
67.8 KEN_Pastoral_N
24.2 KEN_Pastoral_IA
8.0 Yemenite

iyer
01-15-2022, 09:25 PM
I was mistaken to think Somali15 completely lacked Yemeni ancestry, they carry it just as not as much as the other G25 Somalis with some non-recently admixed individuals reaching the 11-12% mark.My father on the hand when I compare him not only to the G25 Somalis but also members on this forum consistently is the least Arabian admixed Somali sample I've seen so far.This is surprising as he has heightened Mota admixture and he has actual Oromo matches (I get a few aswell with a recent completely Shewan match which is pretty cool).One would expect someone with distant Oromo ancestry to have some Semitic ancestry as some of those Somali_Kenya Borana admixed samples do.This continues to puzzle me


Target: Somali:SOMALI15
Distance: 2.9787% / 0.02978660 | ADC: 0.25x RC
98.8 KEN_Pastoral_N
1.2 Yemenite

Target: Drobbah_Father
Distance: 1.8417% / 0.01841709 | ADC: 0.25x RC
90.4 KEN_Pastoral_N
9.6 KEN_Pastoral_IA


https://i.imgur.com/6w6J58L.jpg

My question to you is why do you think Yemeni ancestry in Somalis from Somalia/Somaliland proper is very heterogenous unlike let's say among the Amharas which is much more uniform?


Some of the Horners using my model
Target: Rendille
Distance: 1.6410% / 0.01641037 | ADC: 0.25x RC
65.2 KEN_Pastoral_N
34.8 KEN_Pastoral_IA

Target: Ethiopian_Wolayta
Distance: 1.5098% / 0.01509788 | ADC: 0.25x RC
69.4 KEN_Pastoral_N
20.8 ETH_4500BP
9.8 Yemenite

Target: Ethiopian_Amhara
Distance: 1.5970% / 0.01597047 | ADC: 0.25x RC
77.4 KEN_Pastoral_N
22.6 Yemenite

Target: Somali
Distance: 1.5006% / 0.01500615 | ADC: 0.25x RC
67.8 KEN_Pastoral_N
24.2 KEN_Pastoral_IA
8.0 Yemenite


Are the Amharas very endogamous ?, endogamy could be a reason.

Mnemonics
01-16-2022, 12:34 AM
I was mistaken to think Somali15 completely lacked Yemeni ancestry, they carry it just as not as much as the other G25 Somalis with some non-recently admixed individuals reaching the 11-12% mark.My father on the hand when I compare him not only to the G25 Somalis but also members on this forum consistently is the least Arabian admixed Somali sample I've seen so far.This is surprising as he has heightened Mota admixture and he has actual Oromo matches (I get a few aswell with a recent completely Shewan match which is pretty cool).One would expect someone with distant Oromo ancestry to have some Semitic ancestry as some of those Somali_Kenya Borana admixed samples do.This continues to puzzle me


Target: Somali:SOMALI15
Distance: 2.9787% / 0.02978660 | ADC: 0.25x RC
98.8 KEN_Pastoral_N
1.2 Yemenite

Target: Drobbah_Father
Distance: 1.8417% / 0.01841709 | ADC: 0.25x RC
90.4 KEN_Pastoral_N
9.6 KEN_Pastoral_IA


https://i.imgur.com/6w6J58L.jpg

My question to you is why do you think Yemeni ancestry in Somalis from Somalia/Somaliland proper is very heterogenous unlike let's say among the Amharas which is much more uniform?


Some of the Horners using my model
Target: Rendille
Distance: 1.6410% / 0.01641037 | ADC: 0.25x RC
65.2 KEN_Pastoral_N
34.8 KEN_Pastoral_IA

Target: Ethiopian_Wolayta
Distance: 1.5098% / 0.01509788 | ADC: 0.25x RC
69.4 KEN_Pastoral_N
20.8 ETH_4500BP
9.8 Yemenite

Target: Ethiopian_Amhara
Distance: 1.5970% / 0.01597047 | ADC: 0.25x RC
77.4 KEN_Pastoral_N
22.6 Yemenite

Target: Somali
Distance: 1.5006% / 0.01500615 | ADC: 0.25x RC
67.8 KEN_Pastoral_N
24.2 KEN_Pastoral_IA
8.0 Yemenite



Somali15 also seems to fine being modeled as Ancient Egyptian + Kenya_PastoralIA so it can't be entirely lacking in what ever is causing the models to fit. Although it seems like most of the Pagani Somali samples can't be modelled with Kulubnarti_MA but are modelled well with JK2911 +JK2134.





left pops:
Somali15
Kenya_PastoralIA
EgyptianAnc

right pops:
Cameroon_SMA.SG
DevilsGate_N
South_Africa_HG
Yana_UP
Boncuklu_N.SG
Bahamas_SouthAndros_Ceramic.SG
CHG
Iran_Wezmeh_N.SG
Ekven_IA.SG
Russia_Afanasievo.SG
Rome_Imperial
Lebanon_MBA.SG
Mota
Swiss_HG
Guanche
Iberomaurusian
Kenya_PastoralN
Natufian

0 Somali15 1
1 Kenya_PastoralIA 3
2 EgyptianAnc 2
3 Cameroon_SMA.SG 2
4 DevilsGate_N 4
5 South_Africa_HG 4
6 Yana_UP 2
7 Boncuklu_N.SG 6
8 Bahamas_SouthAndros_Ceramic.SG 4
9 CHG 2
10 Iran_Wezmeh_N.SG 1
11 Ekven_IA.SG 10
12 Russia_Afanasievo.SG 2
13 Rome_Imperial 43
14 Lebanon_MBA.SG 5
15 Mota 1
16 Swiss_HG 1
17 Guanche 4
18 Iberomaurusian 6
19 Kenya_PastoralN 6
20 Natufian 6
jackknife block size: 0.050
snps: 1150465 indivs: 115
number of blocks for block jackknife: 714
## ncols: 1150465
coverage: Somali15 425246
coverage: Kenya_PastoralIA 654056
coverage: EgyptianAnc 544572
coverage: Cameroon_SMA.SG 1148760
coverage: DevilsGate_N 1134715
coverage: South_Africa_HG 1135129
coverage: Yana_UP 1135189
coverage: Boncuklu_N.SG 1138952
coverage: Bahamas_SouthAndros_Ceramic.SG 1150077
coverage: CHG 1134595
coverage: Iran_Wezmeh_N.SG 1148603
coverage: Ekven_IA.SG 1144810
coverage: Russia_Afanasievo.SG 1147532
coverage: Rome_Imperial 1128057
coverage: Lebanon_MBA.SG 1138714
coverage: Mota 1134612
coverage: Swiss_HG 1130733
coverage: Guanche 1140173
coverage: Iberomaurusian 1088044
coverage: Kenya_PastoralN 1034924
coverage: Natufian 529354
Effective number of blocks: 628.885
numsnps used: 157561
codimension 1
f4info:
f4rank: 1 dof: 16 chisq: 7.505 tail: 0.96224719 dofdiff: 18 chisqdiff: -7.505 taildiff: 1
B:
scale 1.000
DevilsGate_N 0.909
South_Africa_HG -0.039
Yana_UP 1.012
Boncuklu_N.SG 1.296
Bahamas_SouthAndros_Ceramic.SG 0.970
CHG 1.156
Iran_Wezmeh_N.SG 1.127
Ekven_IA.SG 0.983
Russia_Afanasievo.SG 1.178
Rome_Imperial 1.259
Lebanon_MBA.SG 1.240
Mota 0.059
Swiss_HG 1.113
Guanche 0.989
Iberomaurusian 0.742
Kenya_PastoralN 0.484
Natufian 1.201
A:
scale 121.303
Kenya_PastoralIA -0.464
EgyptianAnc 1.336


full rank
f4info:
f4rank: 2 dof: 0 chisq: 0.000 tail: 1 dofdiff: 16 chisqdiff: 7.505 taildiff: 0.96224719
B:
scale 256.114 88.710
DevilsGate_N -0.958 0.904
South_Africa_HG -0.017 -0.021
Yana_UP -0.967 1.023
Boncuklu_N.SG -1.205 1.306
Bahamas_SouthAndros_Ceramic.SG -0.962 0.973
CHG -1.088 1.171
Iran_Wezmeh_N.SG -1.063 1.146
Ekven_IA.SG -1.055 0.971
Russia_Afanasievo.SG -1.231 1.162
Rome_Imperial -1.263 1.250
Lebanon_MBA.SG -1.256 1.231
Mota -0.052 0.091
Swiss_HG -1.086 1.119
Guanche -1.062 0.978
Iberomaurusian -0.783 0.741
Kenya_PastoralN -0.472 0.505
Natufian -1.228 1.186
A:
scale 1.414 1.414
Kenya_PastoralIA 1.414 0.000
EgyptianAnc 0.000 1.414


best coefficients: 0.742 0.258
Jackknife mean: 0.741993760 0.258006240
std. errors: 0.018 0.018

error covariance (* 1,000,000)
336 -336
-336 336


summ: Somali15 2 0.962247 0.742 0.258 336 -336 336

fixed pat wt dof chisq tail prob
00 0 16 7.505 0.962247 0.742 0.258
01 1 17 155.899 1.70445e-24 1.000 0.000
10 1 17 1306.781 0 0.000 1.000
best pat: 00 0.962247 - -
best pat: 01 1.70445e-24 chi(nested): 148.394 p-value for nested model: 3.89045e-34

coeffs: 0.742 0.258

## dscore:: f_4(Base, Fit, Rbase, right2)
## genstat:: f_4(Base, Fit, right1, right2)

details: Kenya_PastoralIA DevilsGate_N -0.003742 -6.709545
details: EgyptianAnc DevilsGate_N 0.010186 18.040281
dscore: DevilsGate_N f4: -0.000152 Z: -0.310145

details: Kenya_PastoralIA South_Africa_HG -0.000064 -0.154388
details: EgyptianAnc South_Africa_HG -0.000232 -0.563850
dscore: South_Africa_HG f4: -0.000108 Z: -0.297688

details: Kenya_PastoralIA Yana_UP -0.003777 -6.800368
details: EgyptianAnc Yana_UP 0.011537 21.297552
dscore: Yana_UP f4: 0.000170 Z: 0.356333

details: Kenya_PastoralIA Boncuklu_N.SG -0.004707 -8.576850
details: EgyptianAnc Boncuklu_N.SG 0.014722 27.075955
dscore: Boncuklu_N.SG f4: 0.000302 Z: 0.629301

details: Kenya_PastoralIA Bahamas_SouthAndros_Ceramic.SG -0.003757 -6.981097
details: EgyptianAnc Bahamas_SouthAndros_Ceramic.SG 0.010969 20.486675
dscore: Bahamas_SouthAndros_Ceramic.SG f4: 0.000039 Z: 0.083991

details: Kenya_PastoralIA CHG -0.004247 -7.107122
details: EgyptianAnc CHG 0.013196 22.039686
dscore: CHG f4: 0.000250 Z: 0.484968

details: Kenya_PastoralIA Iran_Wezmeh_N.SG -0.004151 -6.514956
details: EgyptianAnc Iran_Wezmeh_N.SG 0.012924 20.309389
dscore: Iran_Wezmeh_N.SG f4: 0.000251 Z: 0.453896

details: Kenya_PastoralIA Ekven_IA.SG -0.004119 -7.762240
details: EgyptianAnc Ekven_IA.SG 0.010943 20.654745
dscore: Ekven_IA.SG f4: -0.000236 Z: -0.514935

details: Kenya_PastoralIA Russia_Afanasievo.SG -0.004808 -8.610797
details: EgyptianAnc Russia_Afanasievo.SG 0.013098 22.820757
dscore: Russia_Afanasievo.SG f4: -0.000192 Z: -0.392329

details: Kenya_PastoralIA Rome_Imperial -0.004930 -10.223135
details: EgyptianAnc Rome_Imperial 0.014095 30.240547
dscore: Rome_Imperial f4: -0.000026 Z: -0.062056

details: Kenya_PastoralIA Lebanon_MBA.SG -0.004903 -9.023696
details: EgyptianAnc Lebanon_MBA.SG 0.013872 26.299191
dscore: Lebanon_MBA.SG f4: -0.000063 Z: -0.135202

details: Kenya_PastoralIA Mota -0.000203 -0.373260
details: EgyptianAnc Mota 0.001030 1.932756
dscore: Mota f4: 0.000115 Z: 0.244012

details: Kenya_PastoralIA Swiss_HG -0.004242 -6.984596
details: EgyptianAnc Swiss_HG 0.012619 19.337793
dscore: Swiss_HG f4: 0.000105 Z: 0.194111

details: Kenya_PastoralIA Guanche -0.004145 -7.263697
details: EgyptianAnc Guanche 0.011022 19.886276
dscore: Guanche f4: -0.000235 Z: -0.481901

details: Kenya_PastoralIA Iberomaurusian -0.003056 -5.562950
details: EgyptianAnc Iberomaurusian 0.008350 15.795315
dscore: Iberomaurusian f4: -0.000116 Z: -0.244454

details: Kenya_PastoralIA Kenya_PastoralN -0.001843 -4.286312
details: EgyptianAnc Kenya_PastoralN 0.005694 13.209134
dscore: Kenya_PastoralN f4: 0.000100 Z: 0.268087

details: Kenya_PastoralIA Natufian -0.004794 -7.481709
details: EgyptianAnc Natufian 0.013371 20.966520
dscore: Natufian f4: -0.000111 Z: -0.198959

gendstat: Cameroon_SMA.SG DevilsGate_N -0.310
gendstat: Cameroon_SMA.SG South_Africa_HG -0.298
gendstat: Cameroon_SMA.SG Yana_UP 0.356
gendstat: Cameroon_SMA.SG Boncuklu_N.SG 0.629
gendstat: Cameroon_SMA.SG Bahamas_SouthAndros_Ceramic.SG 0.084
gendstat: Cameroon_SMA.SG CHG 0.485
gendstat: Cameroon_SMA.SG Iran_Wezmeh_N.SG 0.454
gendstat: Cameroon_SMA.SG Ekven_IA.SG -0.515
gendstat: Cameroon_SMA.SG Russia_Afanasievo.SG -0.392
gendstat: Cameroon_SMA.SG Rome_Imperial -0.062
gendstat: Cameroon_SMA.SG Lebanon_MBA.SG -0.135
gendstat: Cameroon_SMA.SG Mota 0.244
gendstat: Cameroon_SMA.SG Swiss_HG 0.194
gendstat: Cameroon_SMA.SG Guanche -0.482
gendstat: Cameroon_SMA.SG Iberomaurusian -0.244
gendstat: Cameroon_SMA.SG Kenya_PastoralN 0.268
gendstat: Cameroon_SMA.SG Natufian -0.199
gendstat: DevilsGate_N South_Africa_HG 0.090
gendstat: DevilsGate_N Yana_UP 0.768
gendstat: DevilsGate_N Boncuklu_N.SG 1.095
gendstat: DevilsGate_N Bahamas_SouthAndros_Ceramic.SG 0.523
gendstat: DevilsGate_N CHG 0.894
gendstat: DevilsGate_N Iran_Wezmeh_N.SG 0.826
gendstat: DevilsGate_N Ekven_IA.SG -0.242
gendstat: DevilsGate_N Russia_Afanasievo.SG -0.094
gendstat: DevilsGate_N Rome_Imperial 0.368
gendstat: DevilsGate_N Lebanon_MBA.SG 0.224
gendstat: DevilsGate_N Mota 0.500
gendstat: DevilsGate_N Swiss_HG 0.511
gendstat: DevilsGate_N Guanche -0.181
gendstat: DevilsGate_N Iberomaurusian 0.078
gendstat: DevilsGate_N Kenya_PastoralN 0.631
gendstat: DevilsGate_N Natufian 0.079
gendstat: South_Africa_HG Yana_UP 0.563
gendstat: South_Africa_HG Boncuklu_N.SG 0.876
gendstat: South_Africa_HG Bahamas_SouthAndros_Ceramic.SG 0.314
gendstat: South_Africa_HG CHG 0.710
gendstat: South_Africa_HG Iran_Wezmeh_N.SG 0.671
gendstat: South_Africa_HG Ekven_IA.SG -0.278
gendstat: South_Africa_HG Russia_Afanasievo.SG -0.170
gendstat: South_Africa_HG Rome_Imperial 0.200
gendstat: South_Africa_HG Lebanon_MBA.SG 0.097
gendstat: South_Africa_HG Mota 0.511
gendstat: South_Africa_HG Swiss_HG 0.386
gendstat: South_Africa_HG Guanche -0.258
gendstat: South_Africa_HG Iberomaurusian -0.017
gendstat: South_Africa_HG Kenya_PastoralN 0.581
gendstat: South_Africa_HG Natufian -0.006
gendstat: Yana_UP Boncuklu_N.SG 0.343
gendstat: Yana_UP Bahamas_SouthAndros_Ceramic.SG -0.330
gendstat: Yana_UP CHG 0.184
gendstat: Yana_UP Iran_Wezmeh_N.SG 0.169
gendstat: Yana_UP Ekven_IA.SG -1.032
gendstat: Yana_UP Russia_Afanasievo.SG -0.867
gendstat: Yana_UP Rome_Imperial -0.610
gendstat: Yana_UP Lebanon_MBA.SG -0.612
gendstat: Yana_UP Mota -0.104
gendstat: Yana_UP Swiss_HG -0.136
gendstat: Yana_UP Guanche -0.935
gendstat: Yana_UP Iberomaurusian -0.650
gendstat: Yana_UP Kenya_PastoralN -0.182
gendstat: Yana_UP Natufian -0.574
gendstat: Boncuklu_N.SG Bahamas_SouthAndros_Ceramic.SG -0.683
gendstat: Boncuklu_N.SG CHG -0.137
gendstat: Boncuklu_N.SG Iran_Wezmeh_N.SG -0.118
gendstat: Boncuklu_N.SG Ekven_IA.SG -1.435
gendstat: Boncuklu_N.SG Russia_Afanasievo.SG -1.391
gendstat: Boncuklu_N.SG Rome_Imperial -1.425
gendstat: Boncuklu_N.SG Lebanon_MBA.SG -1.197
gendstat: Boncuklu_N.SG Mota -0.363
gendstat: Boncuklu_N.SG Swiss_HG -0.433
gendstat: Boncuklu_N.SG Guanche -1.347
gendstat: Boncuklu_N.SG Iberomaurusian -0.981
gendstat: Boncuklu_N.SG Kenya_PastoralN -0.572
gendstat: Boncuklu_N.SG Natufian -0.945
gendstat: Bahamas_SouthAndros_Ceramic.SG CHG 0.499
gendstat: Bahamas_SouthAndros_Ceramic.SG Iran_Wezmeh_N.SG 0.440
gendstat: Bahamas_SouthAndros_Ceramic.SG Ekven_IA.SG -0.895
gendstat: Bahamas_SouthAndros_Ceramic.SG Russia_Afanasievo.SG -0.563
gendstat: Bahamas_SouthAndros_Ceramic.SG Rome_Imperial -0.204
gendstat: Bahamas_SouthAndros_Ceramic.SG Lebanon_MBA.SG -0.270
gendstat: Bahamas_SouthAndros_Ceramic.SG Mota 0.145
gendstat: Bahamas_SouthAndros_Ceramic.SG Swiss_HG 0.135
gendstat: Bahamas_SouthAndros_Ceramic.SG Guanche -0.629
gendstat: Bahamas_SouthAndros_Ceramic.SG Iberomaurusian -0.338
gendstat: Bahamas_SouthAndros_Ceramic.SG Kenya_PastoralN 0.157
gendstat: Bahamas_SouthAndros_Ceramic.SG Natufian -0.310
gendstat: CHG Iran_Wezmeh_N.SG 0.001
gendstat: CHG Ekven_IA.SG -1.160
gendstat: CHG Russia_Afanasievo.SG -1.066
gendstat: CHG Rome_Imperial -0.852
gendstat: CHG Lebanon_MBA.SG -0.821
gendstat: CHG Mota -0.249
gendstat: CHG Swiss_HG -0.287
gendstat: CHG Guanche -1.089
gendstat: CHG Iberomaurusian -0.765
gendstat: CHG Kenya_PastoralN -0.369
gendstat: CHG Natufian -0.745
gendstat: Iran_Wezmeh_N.SG Ekven_IA.SG -1.026
gendstat: Iran_Wezmeh_N.SG Russia_Afanasievo.SG -0.943
gendstat: Iran_Wezmeh_N.SG Rome_Imperial -0.713
gendstat: Iran_Wezmeh_N.SG Lebanon_MBA.SG -0.712
gendstat: Iran_Wezmeh_N.SG Mota -0.232
gendstat: Iran_Wezmeh_N.SG Swiss_HG -0.266
gendstat: Iran_Wezmeh_N.SG Guanche -0.943
gendstat: Iran_Wezmeh_N.SG Iberomaurusian -0.730
gendstat: Iran_Wezmeh_N.SG Kenya_PastoralN -0.327
gendstat: Iran_Wezmeh_N.SG Natufian -0.681
gendstat: Ekven_IA.SG Russia_Afanasievo.SG 0.110
gendstat: Ekven_IA.SG Rome_Imperial 0.700
gendstat: Ekven_IA.SG Lebanon_MBA.SG 0.484
gendstat: Ekven_IA.SG Mota 0.691
gendstat: Ekven_IA.SG Swiss_HG 0.728
gendstat: Ekven_IA.SG Guanche 0.002
gendstat: Ekven_IA.SG Iberomaurusian 0.280
gendstat: Ekven_IA.SG Kenya_PastoralN 0.917
gendstat: Ekven_IA.SG Natufian 0.263
gendstat: Russia_Afanasievo.SG Rome_Imperial 0.561
gendstat: Russia_Afanasievo.SG Lebanon_MBA.SG 0.351
gendstat: Russia_Afanasievo.SG Mota 0.579
gendstat: Russia_Afanasievo.SG Swiss_HG 0.649
gendstat: Russia_Afanasievo.SG Guanche -0.100
gendstat: Russia_Afanasievo.SG Iberomaurusian 0.169
gendstat: Russia_Afanasievo.SG Kenya_PastoralN 0.733
gendstat: Russia_Afanasievo.SG Natufian 0.166
gendstat: Rome_Imperial Lebanon_MBA.SG -0.163
gendstat: Rome_Imperial Mota 0.298
gendstat: Rome_Imperial Swiss_HG 0.327
gendstat: Rome_Imperial Guanche -0.629
gendstat: Rome_Imperial Iberomaurusian -0.253
gendstat: Rome_Imperial Kenya_PastoralN 0.449
gendstat: Rome_Imperial Natufian -0.218
gendstat: Lebanon_MBA.SG Mota 0.353
gendstat: Lebanon_MBA.SG Swiss_HG 0.378
gendstat: Lebanon_MBA.SG Guanche -0.450
gendstat: Lebanon_MBA.SG Iberomaurusian -0.133
gendstat: Lebanon_MBA.SG Kenya_PastoralN 0.473
gendstat: Lebanon_MBA.SG Natufian -0.111
gendstat: Mota Swiss_HG -0.017
gendstat: Mota Guanche -0.651
gendstat: Mota Iberomaurusian -0.447
gendstat: Mota Kenya_PastoralN -0.035
gendstat: Mota Natufian -0.382
gendstat: Swiss_HG Guanche -0.677
gendstat: Swiss_HG Iberomaurusian -0.415
gendstat: Swiss_HG Kenya_PastoralN -0.010
gendstat: Swiss_HG Natufian -0.391
gendstat: Guanche Iberomaurusian 0.278
gendstat: Guanche Kenya_PastoralN 0.867
gendstat: Guanche Natufian 0.251
gendstat: Iberomaurusian Kenya_PastoralN 0.581
gendstat: Iberomaurusian Natufian 0.009
gendstat: Kenya_PastoralN Natufian -0.476

drobbah
01-16-2022, 08:13 AM
Bejas lack Barcin ancestry unlike the Nubians and Sudanese Arab.So it intrguied me when I noticed one of the Nubian MA samples is also very similar to Horners in that it also completely lacks Barcin ancestry unlike the rest of the Nubian MA samples and the Eurasian ancestry is mostly Natufian + Neolithic Iranian.

https://i.imgur.com/GdBFkRV.jpg

Target: Sudan_MA_Kulubnarti:I18508
Distance: 4.3396% / 0.04339597 | ADC: 0.25x RC
50.6 SUDANESE7
44.2 Levant_Natufian
5.2 IRN_Ganj_Dareh_N

Distance to: Sudan_MA_Kulubnarti:I18508
0.04514896 Ethiopian_Oromo:OROMO15
0.04678742 Sudanese_Danagla
0.04789057 Somali:SOMALI14
0.04838869 Somali:SOMALI6
0.04903675 Ethiopian_Oromo:OROMO21
0.04986612 Ethiopian_Oromo:OROMO9
0.05036909 Ethiopian_Oromo:OROMO7
0.05131282 Ethiopian_Oromo:OROMO6
0.05234676 Somali:SOMALI12
0.05251321 Somali:SOMALI13
0.05251706 Somali:SOMALI4
0.05332871 Sudanese_Shaigia
0.05367349 Ethiopian_Oromo:OROMO8
0.05395611 Ethiopian_Oromo:OROMO18
0.05397638 Somali:SOMALI7
0.05441380 Somali_Kenya:Ayodo_40S
0.05495389 Ethiopian_Afar:AFAR9
0.05512413 Somali:SOMALI3
0.05529734 Somali_Kenya:Ayodo_43S
0.05667875 Ethiopian_Amhara:AMHARA11
0.05721451 Somali:SOMALI2
0.05759085 Ethiopian_Oromo:OROMO19
0.05789577 Somali_Kenya:Ayodo_34S
0.05808231 Ethiopian_Tigray:TYGRAY5
0.05816498 Ethiopian_Oromo:OROMO20

But unlike Horners this sample prefers heavily AEA enrinched KEN_IA over KEN_N in my other Ancients + Arabian source run


Target: Sudan_MA_Kulubnarti:I18508
Distance: 3.5463% / 0.03546255 | ADC: 0.25x RC
70.8 KEN_Pastoral_IA
29.2 Yemenite_Mahra

Removing Ken_IA

Target: Sudan_MA_Kulubnarti:I18508
Distance: 5.5282% / 0.05528155 | ADC: 0.25x RC
91.2 KEN_Pastoral_N
8.8 Yemenite_Mahra

Fit was extremely bad so I added Dinka:

Target: Sudan_MA_Kulubnarti:I18508
Distance: 3.1342% / 0.03134209 | ADC: 0.25x RC
36.4 Dinka
34.2 Yemenite_Mahra
29.4 KEN_Pastoral_N

Adding EGY_Late_Period:

Target: Sudan_MA_Kulubnarti:I18508
Distance: 3.0950% / 0.03094951 | ADC: 0.25x RC
35.8 Dinka
30.2 KEN_Pastoral_N
26.4 Yemenite_Mahra
7.6 EGY_Late_Period

Searching
02-14-2022, 08:39 PM
Interesting thread

drobbah
03-02-2022, 07:08 PM
Modern Nubians

Target: Nubian_Halfawi
Distance: 1.5416% / 0.01541644
78.4 Nubia_Medieval_Christian_Era_Kulubnarti
15.0 Yemeni_Mahra
6.6 Dinka

Target: Nubian_Danagla
Distance: 1.0448% / 0.01044751
74.2 Nubia_Medieval_Christian_Era_Kulubnarti
15.8 Dinka
10.0 Yemeni_Mahra

Target: Nubian_Mahas
Distance: 0.8144% / 0.00814372
75.4 Nubia_Medieval_Christian_Era_Kulubnarti
12.4 Dinka
12.2 Yemeni_Mahra



Sudanese Arabs

Target: Sudanese_Arab_Batahin
Distance: 0.7569% / 0.00756915
43.4 Nubia_Medieval_Christian_Era_Kulubnarti
40.4 Yemeni_Mahra
12.6 Dinka
3.6 Kenya_Pastoral

Target: Sudanese_Arab_Ja'alin
Distance: 0.7583% / 0.00758290
61.2 Nubia_Medieval_Christian_Era_Kulubnarti
21.0 Yemeni_Mahra
17.0 Dinka
0.8 Kenya_Pastoral

Target: Sudanese_Arab_Shaigia
Distance: 0.9750% / 0.00975000
64.6 Nubia_Medieval_Christian_Era_Kulubnarti
19.8 Dinka
14.6 Yemeni_Mahra
1.0 Kenya_Pastoral




Sudanese Beja & Northern Horners

Target: Beja_Hadendowa
Distance: 1.5939% / 0.01593942
51.2 Nubia_Medieval_Christian_Era_Kulubnarti
30.0 Kenya_Pastoral
15.8 Yemeni_Mahra
3.0 Dinka

Target: Beja_Beni-Amer
Distance: 0.9812% / 0.00981213
44.6 Kenya_Pastoral
27.6 Nubia_Medieval_Christian_Era_Kulubnarti
27.4 Yemeni_Mahra
0.4 Dinka



Target: Eritrean
Distance: 1.1438% / 0.01143812
58.0 Kenya_Pastoral
24.0 Yemeni_Mahra
18.0 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Tigray_Ethiopia
Distance: 1.0054% / 0.01005435
60.8 Kenya_Pastoral
22.0 Yemeni_Mahra
17.2 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Amhara
Distance: 1.0404% / 0.01040362
68.6 Kenya_Pastoral
23.6 Yemeni_Mahra
7.8 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Agaw (Cushitic)
Distance: 1.3174% / 0.01317424
70.8 Kenya_Pastoral
21.0 Yemeni_Mahra
8.2 Nubia_Medieval_Christian_Era_Kulubnarti




Somalis & Rendille

Target: Drobbah_Mother_scaled
Distance: 1.9674% / 0.01967410
79.6 Kenya_Pastoral
20.4 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Drobbah_FTDNA_scaled
Distance: 1.8148% / 0.01814836
81.4 Kenya_Pastoral
18.6 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Somali_Somalia
Distance: 1.4309% / 0.01430905
79.6 Kenya_Pastoral
19.8 Nubia_Medieval_Christian_Era_Kulubnarti
0.6 Yemeni_Mahra

Target: Somali_Somaliland
Distance: 1.4834% / 0.01483352
84.4 Kenya_Pastoral
15.6 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Drobbah_Father
Distance: 1.8405% / 0.01840506
93.4 Kenya_Pastoral
6.6 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Somali_Ethiopia
Distance: 1.6572% / 0.01657244
90.4 Kenya_Pastoral
4.8 Dinka
3.2 Nubia_Medieval_Christian_Era_Kulubnarti
1.6 Yemeni_Mahra




Target: Rendille:T_Rendille-2.DG
Distance: 1.7359% / 0.01735918 | ADC: 0.25x RC
85.6 Kenya_Pastoral
14.4 Nubia_Medieval_Christian_Era_Kulubnarti

Target: Rendille:T_Rendille-1.DG
Distance: 2.3683% / 0.02368316 | ADC: 0.25x RC
88.8 Kenya_Pastoral
11.2 Dinka



Source pops

Dinka,-0.57768787,0.052839375,0.001414125,-0.00767125,-0.002971625,-0.0024228125,-0.013101938,0.015944094,0.079221063,-0.097997438,-0.020516781,0.023374438,-0.041666719,-0.00021940625,0.0086055937,-0.017464594,0.019451687,-0.011956188,0.020924844,-0.020603594,0.00076034375,0.0036594375,-0.003994,-0.0016003437,0.0059088438
Yemeni_Mahra,0.054255556,0.13608089,-0.068258889,-0.12119778,-0.0037272222,-0.056305,-0.013030111,-0.0088204444,0.062879778,-0.002045,0.016798111,-0.032571111,0.065741111,0.0058413333,0.0080527778, 0.027077778,-0.021064333,0.0028716667,-0.0019133333,0.024831222,0.013725889,0.016088667,-0.0087368889,0.0027847778,-0.0052288889
Nubia_Medieval_Christian_Era_Kulubnarti:R,-0.21793353,0.1098802,-0.027228,-0.075948067,0.0030569333,-0.032983467,-0.0221694,0.0088766,0.087795133,-0.053346467,-0.0030420667,-0.0086422667,0.0069770667,0.0024864667,0.014612667 ,-0.011544133,0.0073623333,-0.0088766,0.0015417333,5.8333333E-05,0.00044913333,-0.00036266667,0.0038617333,-0.0039200667,-0.00097393333
Nubia_Medieval_Christian_Era_Kulubnarti:S,-0.2074182,0.10959009,-0.032497,-0.079688714,0.0024531714,-0.036431057,-0.0254616,0.010127029,0.082838,-0.047667714,-0.0025843143,-0.0057720571,0.0096204286,-0.0017222,0.011129,-0.0085993714,0.0082588571,-0.0116698,0.0033507714,-0.0017651143,-0.00037074286,0.00093611429,-0.00016551429,-0.00042351429,-0.0012864571
Kenya_Pastoral:IA,-0.4120395,0.080227,-0.015085,-0.0437665,0.002308,-0.026913,-0.009753,0.005884,0.107068,-0.086744,-0.016807,0.0037465,-0.018954,0.0026145,0.0211725,-0.0235345,0.014994,-0.00057,0.014581,-0.011693,0.0016225,0.00915,-0.005238,-0.001627,-0.0011375
Kenya_Pastoral:N_Elmenteitan,-0.287024,0.090720833,-0.0276555,-0.072621167,0.0024618333,-0.038301,-0.0101445,-0.0047306667,0.1227825,-0.082674333,-0.0060355,-0.0064441667,-0.0024528333,0.00034416667,0.021783,-0.019093,0.01695,0.0029983333,0.010286167,-0.0021678333,0.0041176667,0.0024938333,-0.0084631667,-0.0035748333,0.0022753333
Kenya_Pastoral:Original,-0.3004929,0.0954598,-0.0263607,-0.0737732,0.0007384,-0.0365346,-0.0094944,-0.0014769,0.1220598,-0.0880928,-0.0057811,-0.0097713,-0.0017243,-0.0018993,0.0229232,-0.0209888,0.0222697,-0.0004942,0.0076929,-0.0014882,0.0019467,0.00298,-0.0040671,-0.0013375,-0.0010058