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View Full Version : PGA1 Austria R1b-P312(xU152,L21,DF27,L238,DF19)?



ChrisR
12-29-2014, 09:56 PM
I just found out about http://genomaustria.at/unser-genom//#die-pionierinnen
Of the two samples published one is male: PGA1. Comprehensive data is available: BAM 152 GB, VCF 2 GB
He seems R1b-P312(xU152,L21,DF27,L238,DF19) using http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrY%3A22157311-22157311&hgsid=201033096_WmaQ7yRfgvsBTzLWZDB32azBsZZh

Is a R1b-P312 expert able to get a more detailed subhaplogroup?

Petr
12-29-2014, 11:53 PM
Forbidden

You don't have permission to access /data/Genom_Austria_Website/PGA1_all_variants.vcf on this server.

ChrisR
12-30-2014, 09:49 AM
Forbidden
You don't have permission to access /data/Genom_Austria_Website/PGA1_all_variants.vcf on this server.
I get the same error; should have tried before. I may will ask the project leaders why they put the link but still hide the file.
The UCSC Genome Browser currently gives a Warning error on top, but otherwise seems to work.

EDIT: It seems obvious that PGA1 is CeMM Director (http://genomaustria.at/im-gespraech//#giulio-superti-furga) Superti-Furga (https://en.wikipedia.org/wiki/Giulio_Superti-Furga) (born 1962 in Milan): so the paternal line origin should be Lombardy, Italy,

GoldenHind
12-30-2014, 07:34 PM
I just found out about http://genomaustria.at/unser-genom//#die-pionierinnen
Of the two samples published one is male: PGA1. Comprehensive data is available: BAM 152 GB, VCF 2 GB
He seems R1b-P312(xU152,L21,DF27,L238,DF19) using http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrY%3A22157311-22157311&hgsid=201033096_WmaQ7yRfgvsBTzLWZDB32azBsZZh

Is a R1b-P312 expert able to get a more detailed subhaplogroup?

Assuming your statement is correct, the only remaining possibilities are P312>DF99 and P312**. DF99 is known to be present in northern Italy, while P312** looks to be primarily British.

ChrisR
12-31-2014, 04:02 PM
Thanks for your indication @GoldenHind. DF99 (8829491) (http://genome-euro.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chrY%3A8829491-8829491&hgsid=201033096_WmaQ7yRfgvsBTzLWZDB32azBsZZh) is also ancestral (C). Since I'm no expert in the R1b field I don't know if he really is P312* taking all known P312 Y-sequences into consideration.