Petr
01-28-2015, 10:41 AM
Does anybody know how to obtain the positions of kgpxxxxxxx SNPs in Geno 2.0 results?
The Geno 2.0 results contain lines like:
kgp10004422,12,A,A
kgp10025979,7,T,C
kgp10029360,17,A,A
kgp10041307,10,C,C
kgp10052883,7,A,G
kgp1005322,1,A,A
kgp10056875,2,A,A
kgp10069947,1,A,A
kgp10071124,4,A,A
kgp10071355,4,A,A
kgp10080098,16,C,C
kgp10082356,21,A,G
Here: https://iamveera.wordpress.com/2014/09/09/mapping-of-illuminas-kgp-ids-with-ncbis-rd-ids/ was the download link but it already expired. I wrote to Illumina support team as suggested but received no reply.
Was anybody able to convert Geno 2.0 kgp to either rsids or positions?
Petr
The Geno 2.0 results contain lines like:
kgp10004422,12,A,A
kgp10025979,7,T,C
kgp10029360,17,A,A
kgp10041307,10,C,C
kgp10052883,7,A,G
kgp1005322,1,A,A
kgp10056875,2,A,A
kgp10069947,1,A,A
kgp10071124,4,A,A
kgp10071355,4,A,A
kgp10080098,16,C,C
kgp10082356,21,A,G
Here: https://iamveera.wordpress.com/2014/09/09/mapping-of-illuminas-kgp-ids-with-ncbis-rd-ids/ was the download link but it already expired. I wrote to Illumina support team as suggested but received no reply.
Was anybody able to convert Geno 2.0 kgp to either rsids or positions?
Petr