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Petr
01-28-2015, 10:41 AM
Does anybody know how to obtain the positions of kgpxxxxxxx SNPs in Geno 2.0 results?

The Geno 2.0 results contain lines like:

kgp10004422,12,A,A
kgp10025979,7,T,C
kgp10029360,17,A,A
kgp10041307,10,C,C
kgp10052883,7,A,G
kgp1005322,1,A,A
kgp10056875,2,A,A
kgp10069947,1,A,A
kgp10071124,4,A,A
kgp10071355,4,A,A
kgp10080098,16,C,C
kgp10082356,21,A,G


Here: https://iamveera.wordpress.com/2014/09/09/mapping-of-illuminas-kgp-ids-with-ncbis-rd-ids/ was the download link but it already expired. I wrote to Illumina support team as suggested but received no reply.

Was anybody able to convert Geno 2.0 kgp to either rsids or positions?

Petr