PDA

View Full Version : Getting Y-STR results from 1000 Genomes data...



Dr_McNinja
05-25-2015, 03:20 PM
Am I looking in the right place?

ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/phase3/data/HG03696/

Should I get the BAM file from 'alignment' or 'exome_alignment'? I got the one from the latter, it was an 11GB bam file, and it resulted in 4 STR results. I'm trying the larger 20GB bam file from 'alignment' folder now. Am I in the wrong site or something?

Also why do they seem to upload chromosomes 11 and 20 separately?

MitchellSince1893
05-25-2015, 08:33 PM
I would be interested to know if there is a way to get STR data from the 1000 project i.e. HG 01777.

Dr_McNinja
05-25-2015, 09:05 PM
I used the BAM analyzer kit with the bigger bam file and it worked, I managed to pull a few STRs for HG03696. It's a gigantic file and it took a while though.