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View Full Version : finally managed to upload an ancient dna sample on gedmatch



crossover
09-25-2015, 01:10 AM
i managed to upload one of the pericues samples to gedmatch mentioned on this thread
http://www.anthrogenica.com/showthread.php?5168-has-there-been-ancient-studies-on

the gedmatch kit is F999999

here's the mdlp k23b results
# Population Percent
1 Amerindian 86.83
2 Arctic 9.05
3 African_Pygmy 1.8
4 Ancestral_Altaic 1.75
5 European_Hunters_Gatherers 0.57


eurogenes k15
Eurogenes EUtest V2 K15 Oracle results:

Kit F999999

Admix Results (sorted):

# Population Percent
1 Amerindian 84.21
2 Eastern_Euro 11.23
3 North_Sea 2.79
4 Atlantic 1.77

Single Population Sharing:

# Population (source) Distance
1 Mayan 9.8
2 Pima 11.54
3 Anzick-1 12.21
4 Karitiana 20.98
5 North_Amerindian 29.42
6 East_Greenlander 69.97
7 West_Greenlander 70.73
8 MA-1 82.96
9 Chukchi 97.41
10 Tatar 103.2
11 Chuvash 103.8
12 Kargopol_Russian 104.73
13 Mari 104.76
14 Moldavian 104.82
15 Tadjik 104.88
16 Erzya 105.18
17 Romanian 105.19
18 Hungarian 105.28
19 Afghan_Hazara 105.28
20 Bulgarian 105.37

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 83.8% Karitiana + 16.2% Chuvash @ 6.05
2 84% Karitiana + 16% Mari @ 6.4
3 84.1% Karitiana + 15.9% Erzya @ 6.93
4 80.7% Karitiana + 19.3% MA-1 @ 6.95
5 84.1% Karitiana + 15.9% Kargopol_Russian @ 7.03
6 84.3% Karitiana + 15.7% East_Finnish @ 7.28
7 89.6% Anzick-1 + 10.4% MA-1 @ 7.54
8 84% Karitiana + 16% Tatar @ 7.56
9 91.7% Anzick-1 + 8.3% Erzya @ 7.66
10 91.7% Anzick-1 + 8.3% Kargopol_Russian @ 7.68
11 84.5% Karitiana + 15.5% Southwest_Russian @ 7.78
12 91.8% Anzick-1 + 8.2% Southwest_Russian @ 7.79
13 91.9% Anzick-1 + 8.1% Estonian_Polish @ 7.8
14 91.9% Anzick-1 + 8.1% Ukrainian_Belgorod @ 7.8
15 91.9% Anzick-1 + 8.1% Polish @ 7.84
16 84.5% Karitiana + 15.5% Ukrainian_Belgorod @ 7.84
17 91.8% Anzick-1 + 8.2% East_Finnish @ 7.84
18 92% Anzick-1 + 8% Belorussian @ 7.86
19 91.9% Anzick-1 + 8.1% Estonian @ 7.88
20 91.9% Anzick-1 + 8.1% Russian_Smolensk @ 7.89


dodecad world9

World9 Oracle results:

Kit F999999

Admix Results (sorted):

# Population Percent
1 Amerindian 89.68
2 Atlantic_Baltic 8.16
3 Siberian 2.16

Single Population Sharing:

# Population (source) Distance
1 Maya 4.87
2 Pima 10.27
3 Colombians 10.42
4 Karitiana 13.43
5 Surui 13.43
6 PEL30 13.67
7 Athabask 32.69
8 Ecuadorian 45.72
9 MEX30 55.26
10 Colombian 68.08
11 EastGreenland 72.69
12 WestGreenland 76.97
13 CLM30 77.63
14 Puerto_Rican 90.69
15 PUR30 92.44
16 Aleut 95.49
17 Chukchi 95.68
18 Uzbeks (Behar) 102.08
19 Uygur (HGDP) 102.18
20 Brazilian (Dodecad) 102.51

Mixed Mode Population Sharing:

# Primary Population (source) Secondary Population (source) Distance
1 91.9% Pima + 8.1% Finnish (Dodecad) @ 1.2
2 91.9% Pima + 8.1% FIN30 (1000Genomes) @ 1.24
3 92% Pima + 8% Lithuanian (Dodecad) @ 1.36
4 92.1% Pima + 7.9% Lithuanians @ 1.38
5 89.7% Karitiana + 10.3% Finnish (Dodecad) @ 1.45
6 89.7% Surui + 10.3% Finnish (Dodecad) @ 1.45
7 89.7% Karitiana + 10.3% FIN30 (1000Genomes) @ 1.48
8 89.7% Surui + 10.3% FIN30 (1000Genomes) @ 1.48
9 92% Pima + 8% Swedish (Dodecad) @ 1.58
10 92% Pima + 8% Norwegian (Dodecad) @ 1.61
11 91.9% Pima + 8.1% Belorussian (Behar) @ 1.77
12 91.8% Pima + 8.2% Russian_B (Behar) @ 1.77
13 91.8% Pima + 8.2% Russian (Dodecad) @ 1.78
14 91.8% Pima + 8.2% Russian (HGDP) @ 1.78
15 89.4% Surui + 10.6% Russian (HGDP) @ 1.79
16 89.4% Karitiana + 10.6% Russian (HGDP) @ 1.79
17 87.8% Karitiana + 12.2% Aleut @ 1.8
18 87.8% Surui + 12.2% Aleut @ 1.8
19 91.9% Pima + 8.1% Polish (Dodecad) @ 1.87
20 91.9% Pima + 8.1% Orkney (1000 Genomes) @ 1.9

crossover
09-27-2015, 09:31 PM
ok this kit keeps going into a batch processing limbo so i may try reuploading it

Tomenable
06-29-2017, 12:50 AM
Which one is this? Pericues 1, 2, 3 or 4? Or another one?

crossover
06-30-2017, 06:08 AM
Which one is this? Pericues 1, 2, 3 or 4? Or another one?

it was the first one if recall correctly. i eventually deleted the kit after it never batch processed