Kurd
08-14-2016, 02:19 AM
Here I use Dstats to explore Natufian vs Iran Neolithic shared drift for Kurds and other groups. Think of a see-saw with Natufian sitting on one end and Iran N on the other. Each POP1 sample is located somewhere on the see-saw. If D=0, this means the sample is exactly in the middle of the see-saw, equally distant from both Natufian and Iran N. If D is -ve, then the sample is shifted towards the Iran N side, and the more -ve the D, the more Iran N shifted it is (top of table). Conversly, if D is +ve, then the sample is Natufian shifted, the more +ve the more Natufian shifted (bottom of table).
Some interesting observations:
1- Europeans share a longer drift path with Natufian, than with Iran N;
2- WHG share a longer path with Natufian than Iran N, with Loschbour, La Brana, and Hungarian KO1 sharing a slightly longer drift path with Natufian than Villabruna with Natufian, possibly indicating Natufian - WHG geneflow in the Neolithic;
3-Whereas it is not surprising that CHG is very Iran N shifted, I did not expect AG3 to be up there with Kotias;
4- If L= Shared path length Iran N - shared path length Natufian, then L is greater for AG3 than for MA1 and EHG, indicating geneflow from pops related to AG3 (and not MA1 or EHG) into Iran Neolithic. Whereas David has mentioned that he found a closer relationship between Iranians and AG3, it appears that this is not the case for all Kurds, as some of my Kurds showed an increased affinity for MA1 than AG3 in D( MA1, AG3, Kurds, Chimp).
5- All Kurds are Iran N shifted, with some Kurds being as Iran N shifted as some S Asians are.
POP1
POP2
TARGET
OUT
D
Z
SNPs
Natufian
Iran_N1
Iran_N_WC1
Chimp
-0.1049
-12.387
91962
Natufian
Iran_N1
Iran_LN
Chimp
-0.1037
-10.472
88129
Natufian
Iran_N1
Iran_Hotu
Chimp
-0.0782
-5.135
26498
Natufian
Iran_N1
Kotias
Chimp
-0.0656
-8.098
147608
Natufian
Iran_N1
Satsurbila
Chimp
-0.0632
-6.781
102020
Natufian
Iran_N1
AG3
Chimp
-0.0445
-3.512
44725
Natufian
Iran_N1
Iran_ChL
Chimp
-0.0433
-5.628
137044
Natufian
Iran_N1
Kennewick
Chimp
-0.0421
-4.193
78268
Natufian
Iran_N1
.Dluffy
Chimp
-0.0416
-5.823
146802
Natufian
Iran_N1
.Sapporo
Chimp
-0.0402
-5.56
145278
Natufian
Iran_N1
.Parasar
Chimp
-0.0399
-5.649
143107
Natufian
Iran_N1
.Varun
Chimp
-0.0395
-5.35
146427
Natufian
Iran_N1
.Khana
Chimp
-0.0394
-5.33
146745
Natufian
Iran_N1
.Bored
Chimp
-0.0391
-5.385
147110
Natufian
Iran_N1
.Bol_Nat
Chimp
-0.0389
-5.30
144938
Natufian
Iran_N1
.McNinja
Chimp
-0.0387
-5.25
146032
Natufian
Iran_N1
Palliyar
Chimp
-0.038
-2.592
24341
Natufian
Iran_N1
.Sein
Chimp
-0.0379
-5.314
146023
Natufian
Iran_N1
.Kurd_F4
Chimp
-0.0364
-5.12
146876
Natufian
Iran_N1
Kharia
Chimp
-0.0358
-2.511
24341
Natufian
Iran_N1
.Reza1
Chimp
-0.035
-4.75
146314
Natufian
Iran_N1
.Kurd_F6
Chimp
-0.0341
-4.462
143065
Natufian
Iran_N1
.Melif
Chimp
-0.0339
-4.67
147297
Natufian
Iran_N1
.Kaido
Chimp
-0.0326
-4.46
146850
Natufian
Iran_N1
.Zara
Chimp
-0.0323
-4.276
147171
Natufian
Iran_N1
.Kenji
Chimp
-0.0312
-4.40
146695
Natufian
Iran_N1
Kalash
Chimp
-0.031
-3.139
42734
Natufian
Iran_N1
Brahui
Chimp
-0.03
-3.069
42734
Natufian
Iran_N1
Balochi
Chimp
-0.0276
-2.828
42734
Natufian
Iran_N1
Tajik
Chimp
-0.0274
-4.684
144740
Natufian
Iran_N1
Makrani
Chimp
-0.0267
-2.747
42734
Natufian
Iran_N1
.NK19191
Chimp
-0.0266
-3.78
146643
Natufian
Iran_N1
Clovis
Chimp
-0.0264
-3.179
147476
Natufian
Iran_N1
Onge
Chimp
-0.0249
-1.618
24341
Natufian
Iran_N1
.Iranian567
Chimp
-0.0236
-3.34
146762
Natufian
Iran_N1
.Halgurd
Chimp
-0.0224
-2.987
146771
Natufian
Iran_N1
.Kurd_F2
Chimp
-0.0224
-3.135
146734
Natufian
Iran_N1
.Kurd_F8
Chimp
-0.0216
-2.937
146433
Natufian
Iran_N1
.Kurd_F3
Chimp
-0.0209
-2.801
147220
Natufian
Iran_N1
.Kurd_F7
Chimp
-0.0195
-2.588
147171
Natufian
Iran_N1
MA1
Chimp
-0.0187
-1.962
107403
Natufian
Iran_N1
EHG
Chimp
-0.0183
-2.372
141580
Natufian
Iran_N1
.Kurd_C2
Chimp
-0.018
-2.459
147072
Natufian
Iran_N1
.Mfa
Chimp
-0.018
-2.449
145084
Some interesting observations:
1- Europeans share a longer drift path with Natufian, than with Iran N;
2- WHG share a longer path with Natufian than Iran N, with Loschbour, La Brana, and Hungarian KO1 sharing a slightly longer drift path with Natufian than Villabruna with Natufian, possibly indicating Natufian - WHG geneflow in the Neolithic;
3-Whereas it is not surprising that CHG is very Iran N shifted, I did not expect AG3 to be up there with Kotias;
4- If L= Shared path length Iran N - shared path length Natufian, then L is greater for AG3 than for MA1 and EHG, indicating geneflow from pops related to AG3 (and not MA1 or EHG) into Iran Neolithic. Whereas David has mentioned that he found a closer relationship between Iranians and AG3, it appears that this is not the case for all Kurds, as some of my Kurds showed an increased affinity for MA1 than AG3 in D( MA1, AG3, Kurds, Chimp).
5- All Kurds are Iran N shifted, with some Kurds being as Iran N shifted as some S Asians are.
POP1
POP2
TARGET
OUT
D
Z
SNPs
Natufian
Iran_N1
Iran_N_WC1
Chimp
-0.1049
-12.387
91962
Natufian
Iran_N1
Iran_LN
Chimp
-0.1037
-10.472
88129
Natufian
Iran_N1
Iran_Hotu
Chimp
-0.0782
-5.135
26498
Natufian
Iran_N1
Kotias
Chimp
-0.0656
-8.098
147608
Natufian
Iran_N1
Satsurbila
Chimp
-0.0632
-6.781
102020
Natufian
Iran_N1
AG3
Chimp
-0.0445
-3.512
44725
Natufian
Iran_N1
Iran_ChL
Chimp
-0.0433
-5.628
137044
Natufian
Iran_N1
Kennewick
Chimp
-0.0421
-4.193
78268
Natufian
Iran_N1
.Dluffy
Chimp
-0.0416
-5.823
146802
Natufian
Iran_N1
.Sapporo
Chimp
-0.0402
-5.56
145278
Natufian
Iran_N1
.Parasar
Chimp
-0.0399
-5.649
143107
Natufian
Iran_N1
.Varun
Chimp
-0.0395
-5.35
146427
Natufian
Iran_N1
.Khana
Chimp
-0.0394
-5.33
146745
Natufian
Iran_N1
.Bored
Chimp
-0.0391
-5.385
147110
Natufian
Iran_N1
.Bol_Nat
Chimp
-0.0389
-5.30
144938
Natufian
Iran_N1
.McNinja
Chimp
-0.0387
-5.25
146032
Natufian
Iran_N1
Palliyar
Chimp
-0.038
-2.592
24341
Natufian
Iran_N1
.Sein
Chimp
-0.0379
-5.314
146023
Natufian
Iran_N1
.Kurd_F4
Chimp
-0.0364
-5.12
146876
Natufian
Iran_N1
Kharia
Chimp
-0.0358
-2.511
24341
Natufian
Iran_N1
.Reza1
Chimp
-0.035
-4.75
146314
Natufian
Iran_N1
.Kurd_F6
Chimp
-0.0341
-4.462
143065
Natufian
Iran_N1
.Melif
Chimp
-0.0339
-4.67
147297
Natufian
Iran_N1
.Kaido
Chimp
-0.0326
-4.46
146850
Natufian
Iran_N1
.Zara
Chimp
-0.0323
-4.276
147171
Natufian
Iran_N1
.Kenji
Chimp
-0.0312
-4.40
146695
Natufian
Iran_N1
Kalash
Chimp
-0.031
-3.139
42734
Natufian
Iran_N1
Brahui
Chimp
-0.03
-3.069
42734
Natufian
Iran_N1
Balochi
Chimp
-0.0276
-2.828
42734
Natufian
Iran_N1
Tajik
Chimp
-0.0274
-4.684
144740
Natufian
Iran_N1
Makrani
Chimp
-0.0267
-2.747
42734
Natufian
Iran_N1
.NK19191
Chimp
-0.0266
-3.78
146643
Natufian
Iran_N1
Clovis
Chimp
-0.0264
-3.179
147476
Natufian
Iran_N1
Onge
Chimp
-0.0249
-1.618
24341
Natufian
Iran_N1
.Iranian567
Chimp
-0.0236
-3.34
146762
Natufian
Iran_N1
.Halgurd
Chimp
-0.0224
-2.987
146771
Natufian
Iran_N1
.Kurd_F2
Chimp
-0.0224
-3.135
146734
Natufian
Iran_N1
.Kurd_F8
Chimp
-0.0216
-2.937
146433
Natufian
Iran_N1
.Kurd_F3
Chimp
-0.0209
-2.801
147220
Natufian
Iran_N1
.Kurd_F7
Chimp
-0.0195
-2.588
147171
Natufian
Iran_N1
MA1
Chimp
-0.0187
-1.962
107403
Natufian
Iran_N1
EHG
Chimp
-0.0183
-2.372
141580
Natufian
Iran_N1
.Kurd_C2
Chimp
-0.018
-2.459
147072
Natufian
Iran_N1
.Mfa
Chimp
-0.018
-2.449
145084