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Kurd
08-21-2016, 04:39 AM
Davidski did some Dstat plots for shared drift of X vs Yamnaya/Iran N at http://eurogenes.blogspot.com/ under Zoroastrians. The plots included various populations from the 2016 Near East papers, but unfortunately did not include Kurds. Since some of the Iranian Neolithic samples were recovered from Kurdistan, I thought it appropriate that Kurds be included.

What I found out was that many Kurds not only shared more drift with Iran N than the other Iranian and SC Asian samples, but also shared more drift with Yamnaya as well in D ( X, Mota, Iran N or Yamnaya, Mbuti).

For Iran N, I used the Ganj Dareh sample since it was a high coverage one. The fact that many Kurds share more drift with Yamnaya than SC Asians, does not necessarily mean that they received more Bronze Age steppe input than SC Asians. It likely indicates more shared drift with Yamnaya ancestors. For BA steppe input, I would have to infer via other methods.

All tables under this thread are sorted with samples sharing the most drift on top.

This one compares shared drift [sample/Iran N] - [Mota/Iran N]:



POP1
POP2
TARGET
OUT
D
Z
SNPs


Iran_LN
Mota
Iran_N
Mbuti.DG
0.3188
32.295
46529


.Kurd_C2
Mota
Iran_N
Mbuti.DG
0.2766
41.531
87968


.Kurd_F8
Mota
Iran_N
Mbuti.DG
0.275
40.482
87812


Iran_Mazand
Mota
Iran_N
Mbuti.DG
0.2743
49.167
88120


.Kurd_F7
Mota
Iran_N
Mbuti.DG
0.273
39.923
88072


Iran_Lori
Mota
Iran_N
Mbuti.DG
0.2708
47.72
88120


.Kurd_C3
Mota
Iran_N
Mbuti.DG
0.2702
39.743
88050


Balochi
Mota
Iran_N
Mbuti.DG
0.2687
48.052
88235


Brahui
Mota
Iran_N
Mbuti.DG
0.2678
47.889
88235


Iranian
Mota
Iran_N
Mbuti.DG
0.267
46.791
88235


Kalash
Mota
Iran_N
Mbuti.DG
0.2668
46.714
88235


Pathan
Mota
Iran_N
Mbuti.DG
0.2654
48.269
88235


Makrani
Mota
Iran_N
Mbuti.DG
0.2652
47.819
88235


.Sein
Mota
Iran_N
Mbuti.DG
0.2641
37.966
87395


.Kurd_C1
Mota
Iran_N
Mbuti.DG
0.2625
39.663
87884




Shared drift with Yamnaya:



POP1
POP2
TARGET
OUT
D
Z
SNPs


Kalash
Mota
Steppe_EMBA
Mbuti.DG
0.2876
81.098
111283


.Kurd_F8
Mota
Steppe_EMBA
Mbuti.DG
0.2868
66.773
110730


Iran_Mazandarani
Mota
Steppe_EMBA
Mbuti.DG
0.2848
81.678
111146


.Kurd_C2
Mota
Steppe_EMBA
Mbuti.DG
0.2846
70.259
110972


Pathan
Mota
Steppe_EMBA
Mbuti.DG
0.2837
83.151
111283


.Kurd_C3
Mota
Steppe_EMBA
Mbuti.DG
0.2835
68.998
111075


Iran_Lori
Mota
Steppe_EMBA
Mbuti.DG
0.2828
79.279
111146


.Kurd_F7
Mota
Steppe_EMBA
Mbuti.DG
0.2826
64.287
111077


.Sein
Mota
Steppe_EMBA
Mbuti.DG
0.2815
66.715
110308


Iranian
Mota
Steppe_EMBA
Mbuti.DG
0.2804
79.651
111283


.Kurd_C1
Mota
Steppe_EMBA
Mbuti.DG
0.2798
66.282
110863


Balochi
Mota
Steppe_EMBA
Mbuti.DG
0.2792
80.854
111283


Brahui
Mota
Steppe_EMBA
Mbuti.DG
0.2776
80.567
111283


Makrani
Mota
Steppe_EMBA
Mbuti.DG
0.2729
80.213
111283


Iran_LN
Mota
Steppe_EMBA
Mbuti.DG
0.2678
43.424
53490




http://i.imgur.com/vDT3rAN.jpg


According to Davidski's graph, Zoroastrians would plot around Kurd C3 if I had included them

Kurd
08-21-2016, 05:07 AM
This table shows absolute shared drift with Yamnaya using 2 outgroups, with Kurds on top. Ancients shaded purple, and Kurds orange.



POP1
POP2
TARGET
OUT
D
Z
SNPs


EHG
Mbuti.DG
Steppe_EMBA
Chimp
0.4179
92.442
106885


Andronovo
Mbuti.DG
Steppe_EMBA
Chimp
0.4112
100
108437


Scythian_IA
Mbuti.DG
Steppe_EMBA
Chimp
0.3994
74.625
101016


.Mfa
Mbuti.DG
Steppe_EMBA
Chimp
0.3868
86.888
107154


.Kurd_F5
Mbuti.DG
Steppe_EMBA
Chimp
0.3864
86.821
108574


.Kurd_C3
Mbuti.DG
Steppe_EMBA
Chimp
0.3862
92.337
108564


Kalash
Mbuti.DG
Steppe_EMBA
Chimp
0.3862
100
108756


.Kurd_Ezidi
Mbuti.DG
Steppe_EMBA
Chimp
0.3859
87.536
107786


.Kurd_F1
Mbuti.DG
Steppe_EMBA
Chimp
0.3856
90.957
108554


.Kurd_F2
Mbuti.DG
Steppe_EMBA
Chimp
0.3855
86.715
108384


.Kurd_C2
Mbuti.DG
Steppe_EMBA
Chimp
0.3854
88.599
108466


.Znertu
Mbuti.DG
Steppe_EMBA
Chimp
0.3853
86.422
108274


Tajik
Mbuti.DG
Steppe_EMBA
Chimp
0.3852
100
108756


.Kurd_F8
Mbuti.DG
Steppe_EMBA
Chimp
0.3851
86.703
108225


.Sein
Mbuti.DG
Steppe_EMBA
Chimp
0.3844
88.24
107815


Sardinian
Mbuti.DG
Steppe_EMBA
Chimp
0.384
100
108756


.Melif
Mbuti.DG
Steppe_EMBA
Chimp
0.3835
86.73
108546


.Kurd_F4
Mbuti.DG
Steppe_EMBA
Chimp
0.3831
88.023
108366


.Zephyrous
Mbuti.DG
Steppe_EMBA
Chimp
0.3829
90.006
108247


.Sapporo
Mbuti.DG
Steppe_EMBA
Chimp
0.3829
86.875
107273


.Kurd_F3
Mbuti.DG
Steppe_EMBA
Chimp
0.3826
81.888
108557


Iranian_Lori
Mbuti.DG
Steppe_EMBA
Chimp
0.3824
100
108622


Iran_Chl
Mbuti.DG
Steppe_EMBA
Chimp
0.3823
79.905
92974


.NK19191
Mbuti.DG
Steppe_EMBA
Chimp
0.382
83.193
108190


Iranian_Mazandarani
Mbuti.DG
Steppe_EMBA
Chimp
0.382
100
108622


.Dluffy
Mbuti.DG
Steppe_EMBA
Chimp
0.3816
85.039
108301


.Kurd_F6
Mbuti.DG
Steppe_EMBA
Chimp
0.3816
86.318
104335


.Halgurd
Mbuti.DG
Steppe_EMBA
Chimp
0.3813
84.243
108406


.Kurd_C1
Mbuti.DG
Steppe_EMBA
Chimp
0.3812
86.454
108376


.Humanist
Mbuti.DG
Steppe_EMBA
Chimp
0.3811
85.508
108395


.Bol_Nat
Mbuti.DG
Steppe_EMBA
Chimp
0.3808
84.461
107047


Iranian_Shirazi
Mbuti.DG
Steppe_EMBA
Chimp
0.38
100
108622


.Bored
Mbuti.DG
Steppe_EMBA
Chimp
0.3792
83.361
108496


.Kurd_F7
Mbuti.DG
Steppe_EMBA
Chimp
0.3792
84.975
108559


Iranian
Mbuti.DG
Steppe_EMBA
Chimp
0.3792
100
108756


Balochi
Mbuti.DG
Steppe_EMBA
Chimp
0.3777
100
108756


.Kaido
Mbuti.DG
Steppe_EMBA
Chimp
0.3773
84.836
108392


.Khana
Mbuti.DG
Steppe_EMBA
Chimp
0.377
86.062
108334


Brahui
Mbuti.DG
Steppe_EMBA
Chimp
0.3769
100
108756

Kurd
08-21-2016, 05:07 AM
.Zara
Mbuti.DG
Steppe_EMBA
Chimp
0.3868


Kalash
Mbuti.DG
Steppe_EMBA
Chimp
0.3864


Clovis
Mbuti.DG
Steppe_EMBA
Chimp
0.3856


.Varun
Mbuti.DG
Steppe_EMBA
Chimp
0.3852


Iran_Hotu
Mbuti.DG
Steppe_EMBA
Chimp
0.3848


Iran_LN
Mbuti.DG
Steppe_EMBA
Chimp
0.3843


Sardinian
Mbuti.DG
Steppe_EMBA
Chimp
0.3842


Iran_Lori
Mbuti.DG
Steppe_EMBA
Chimp
0.3826


Kennewick
Mbuti.DG
Steppe_EMBA
Chimp
0.3799


Iran_Shirazi
Mbuti.DG
Steppe_EMBA
Chimp
0.3799


Iranian
Mbuti.DG
Steppe_EMBA
Chimp
0.3797


Balochi
Mbuti.DG
Steppe_EMBA
Chimp
0.378


Brahui
Mbuti.DG
Steppe_EMBA
Chimp
0.3769


Iran_N1
Mbuti.DG
Steppe_EMBA
Chimp
0.3757


Makrani
Mbuti.DG
Steppe_EMBA
Chimp
0.3731


GoyetQ116
Mbuti.DG
Steppe_EMBA
Chimp
0.373


Karitiana
Mbuti.DG
Steppe_EMBA
Chimp
0.3723


.Reza1
Mbuti.DG
Steppe_EMBA
Chimp
0.3722


Iranian_Bandari
Mbuti.DG
Steppe_EMBA
Chimp
0.3668


Iran_N_WC1
Mbuti.DG
Steppe_EMBA
Chimp
0.3652


Syrian
Mbuti.DG
Steppe_EMBA
Chimp
0.365


Saudi
Mbuti.DG
Steppe_EMBA
Chimp
0.3642


Natufian
Mbuti.DG
Steppe_EMBA
Chimp
0.36


Palliyar
Mbuti.DG
Steppe_EMBA
Chimp
0.3574


Kharia
Mbuti.DG
Steppe_EMBA
Chimp
0.3541


Onge
Mbuti.DG
Steppe_EMBA
Chimp
0.344


Han
Mbuti.DG
Steppe_EMBA
Chimp
0.3418


Australian
Mbuti.DG
Steppe_EMBA
Chimp
0.3146


Papuan
Mbuti.DG
Steppe_EMBA
Chimp
0.3139


Mota
Mbuti.DG
Steppe_EMBA
Chimp
0.1194


Yoruba
Mbuti.DG
Steppe_EMBA
Chimp
0.0934

Kurd
08-21-2016, 05:43 AM
Absolute shared drift with Steppe Eneolithic using 2 outgroups



POP1
POP2
TARGET
OUT
D
Z
SNPs


EHG
Mbuti.DG
Steppe_Eneolithic
Chimp
0.45
71.77
78235


Scythian_IA
Mbuti.DG
Steppe_Eneolithic
Chimp
0.4154
58.301
74971


Andronovo
Mbuti.DG
Steppe_Eneolithic
Chimp
0.4149
79.051
78819


MA1
Mbuti.DG
Steppe_Eneolithic
Chimp
0.4133
54.465
57202


.Kurd_C2
Mbuti.DG
Steppe_Eneolithic
Chimp
0.39
66.443
78762


.Znertu
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3885
65.68
78598


Tajik
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3884
92.358
78987


.Kurd_C3
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3878
67.772
78833


Kalash
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3878
86.906
78987


.Kurd_F5
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3857
66.329
78852


.Sapporo
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3857
64.013
77854


Pathan
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3846
91.153
78987


Pashtun_Afghan
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3845
84.982
74917


Karitiana
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3842
71.539
78987


.Bored
Mbuti.DG
Steppe_Eneolithic
Chimp
0.384
67.92
78776


.Kaido
Mbuti.DG
Steppe_Eneolithic
Chimp
0.384
66.15
78718


.Kurd_F1
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3839
69.541
78845


.Mfa
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3839
65.284
77783


.Sein
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3838
63.303
78259


.Kurd_F4
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3837
64.357
78682


.Kurd_F3
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3829
63.789
78838


.Melif
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3829
67.533
78828


.Kurd_Ezidi
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3815
66.547
78235


.Kurd_F2
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3813
65.928
78706


Iranian_Lori
Mbuti.DG
Steppe_Eneolithic
Chimp
0.381
87.791
78881


.Khana
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3807
64.829
78669


Iranian_Mazandarani
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3805
89.106
78881


.Dluffy
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3803
64.107
78649


.Kenji
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3801
65.887
78608


.Parasar
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3797
64.361
75646


.NK19191
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3791
63.616
78546


Balochi
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3791
91.029
78987


Iranian_Shirazi
Mbuti.DG
Steppe_Eneolithic
Chimp
0.379
91.578
78881

Kurd
08-21-2016, 05:44 AM
.Halgurd
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3788
64.825
78736


Iranian
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3787
88.001
78987


.Kurd_C1
Mbuti.DG
Steppe_Eneolithic
Chimp
0.378
64.428
78698


Brahui
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3776
90.804
78987


.Bol_Nat
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3775
63.845
77691


.Kurd_F6
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3772
62.33
75634


.Kurd_F8
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3766
62.7
78634


.Zephyrous
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3766
67.019
78591


.McNinja
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3764
67.235
78234


.Humanist
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3759
64.104
78701


.Kurd_F7
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3755
65.138
78841


Makrani
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3741
87.507
78987


Iran_Chl
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3736
58.151
70239


.Zara
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3721
60.826
78783


.Reza1
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3707
63.651
78438


Iran_LN
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3697
40.458
40575


.Varun
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3694
61.741
78450


Palliyar
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3669
50.917
32441


Iranian_Bandari
Mbuti.DG
Steppe_Eneolithic
Chimp
0.366
85.814
78881


Syrian
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3622
83.815
78987


Saudi
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3593
79.854
78987


Kharia
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3572
52.322
32441


Onge
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3564
46.756
32441


Iran_N
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3526
46.808
65313


Han
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3521
72.573
78987


Natufian
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3489
34.444
33302


Papuan
Mbuti.DG
Steppe_Eneolithic
Chimp
0.3237
57.357
78987


Mota
Mbuti.DG
Steppe_Eneolithic
Chimp
0.119
15.376
78977


Yoruba
Mbuti.DG
Steppe_Eneolithic
Chimp
0.0984
23.399
78987

Kurd
08-21-2016, 06:05 AM
Shared drift with Iran Neolithic WC1 sorted with most share drift on top



POP1
POP2
TARGET
OUT
D


Iran_N1
Mota
Iran_N_WC1
Mbuti.DG
0.307


Iran_LN
Mota
Iran_N_WC1
Mbuti.DG
0.3014


Iran_Hotu
Mota
Iran_N_WC1
Mbuti.DG
0.2892


Iran_ChL
Mota
Iran_N_WC1
Mbuti.DG
0.2866


.Kurd_C3
Mota
Iran_N_WC1
Mbuti.DG
0.2695


.Kurd_F8
Mota
Iran_N_WC1
Mbuti.DG
0.2692


.Kurd_C2
Mota
Iran_N_WC1
Mbuti.DG
0.2682


.Kurd_C1
Mota
Iran_N_WC1
Mbuti.DG
0.2678


.Kurd_F7
Mota
Iran_N_WC1
Mbuti.DG
0.2652


.Sein
Mota
Iran_N_WC1
Mbuti.DG
0.2637


Iran_Mazandarani
Mota
Iran_N_WC1
Mbuti.DG
0.2627


Iran_Lori
Mota
Iran_N_WC1
Mbuti.DG
0.2573


Balochi
Mota
Iran_N_WC1
Mbuti.DG
0.2568


Kalash
Mota
Iran_N_WC1
Mbuti.DG
0.2563


Iranian
Mota
Iran_N_WC1
Mbuti.DG
0.2554


Brahui
Mota
Iran_N_WC1
Mbuti.DG
0.255


Pathan
Mota
Iran_N_WC1
Mbuti.DG
0.2547


Makrani
Mota
Iran_N_WC1
Mbuti.DG
0.2526




With Iran Chl:



POP1
POP2
TARGET
OUT
D


Iran_LN
Mota
Iran_ChL
Mbuti.DG
0.2996


Iran_N1
Mota
Iran_ChL
Mbuti.DG
0.2986


.Kurd_C2
Mota
Iran_ChL
Mbuti.DG
0.2956


Iran_Hotu
Mota
Iran_ChL
Mbuti.DG
0.2931


.Kurd_F8
Mota
Iran_ChL
Mbuti.DG
0.292


.Kurd_F7
Mota
Iran_ChL
Mbuti.DG
0.2907


.Kurd_C3
Mota
Iran_ChL
Mbuti.DG
0.2892


.Kurd_C1
Mota
Iran_ChL
Mbuti.DG
0.2859


Iran_Mazandarani
Mota
Iran_ChL
Mbuti.DG
0.2814


.Sein
Mota
Iran_ChL
Mbuti.DG
0.2805


Iran_Lori
Mota
Iran_ChL
Mbuti.DG
0.2786


Iranian
Mota
Iran_ChL
Mbuti.DG
0.2777


Kalash
Mota
Iran_ChL
Mbuti.DG
0.2705


Balochi
Mota
Iran_ChL
Mbuti.DG
0.2703


Brahui
Mota
Iran_ChL
Mbuti.DG
0.2696


Pathan
Mota
Iran_ChL
Mbuti.DG
0.2688


Makrani
Mota
Iran_ChL
Mbuti.DG
0.2675

Kurd
08-21-2016, 07:11 AM
A comparison with Iraqi Kurd C2. Kurd C2 has more shared drift with Steppe Eneolithic than all moderns (except for Znertu who is similar). All samples below red line share less drift with Eneolithic than Kurd C2. Notice Kurds stacked towards top of table



POP1
POP2
TARGET
OUT
D
Z
SNPs


EHG
.Kurd_C2
Steppe_Eneolithic
Chimp
0.0879
10.609
78015


Scythian_IA
.Kurd_C2
Steppe_Eneolithic
Chimp
0.0375
4.28
74756


MA1
.Kurd_C2
Steppe_Eneolithic
Chimp
0.0361
3.73
57027


Andronovo
.Kurd_C2
Steppe_Eneolithic
Chimp
0.0357
5.17
78594


.Znertu
.Kurd_C2
Steppe_Eneolithic
Chimp
0.0001
0.012
78450











Tajik
.Kurd_C2
Steppe_Eneolithic
Chimp
0
-0.007
78762


Kalash
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0012
-0.205
78762


Karitiana
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0028
-0.378
78762


.Kurd_C3
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0031
-0.451
78699


Pashtun_Afghan
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0045
-0.761
74764


.Sapporo
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0049
-0.636
77713


.Bored
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0052
-0.706
78645


Pathan
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0058
-1.036
78762


.Kaido
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0073
-0.966
78598


.Kurd_F3
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0074
-0.978
78642


.Kurd_F4
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0075
-0.98
78462


.Mfa
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0075
-1.001
77586


.Melif
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0076
-1.019
78693


.Kurd_F5
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.008
-1.062
78645


.Kurd_F1
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0081
-1.079
78644


.Kurd_F2
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0097
-1.301
78516


.Dluffy
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0099
-1.312
78522


.Sein
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0105
-1.445
78115


.Parasar
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.011
-1.445
75505


Iranian_Mazandarani
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0112
-2
78656


Iranian_Lori
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0115
-2.023
78656


.Khana
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0118
-1.514
78546


.Kenji
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0119
-1.586
78489


.Kurd_Ezidi
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.012
-1.604
78035


.NK19191
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0128
-1.621
78399


Balochi
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0141
-2.551
78762


Iranian_Shirazi
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0141
-2.496
78656


.Kurd_C1
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0144
-1.949
78581


Iranian
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0146
-2.585
78762


.Halgurd
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.015
-2.072
78545


.Kurd_F6
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0155
-2.053
75442


.Bol_Nat
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0165
-2.181
77551


Brahui
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0167
-3.052
78762


.McNinja
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0169
-2.251
78092


.Kurd_F7
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0174
-2.391
78636


.Humanist
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0182
-2.518
78481

Kurd
08-21-2016, 07:35 AM
Here is a good qpAdm fit for Kurd C3, using outgroups listed in Lazaridis 2016.




SAMPLE
IRAN NEOL
ANATOLIA NEOL
EHG
TAIL PROBABILITY
CHISQ


KURD C3 (iraq)
42.0%
37.0%
21.0%
78%
3.3


Standard Errors
9.6%
8.9%
5.0%

Kurd
08-21-2016, 07:33 PM
Continued from post #2




Iran_LN

Mbuti.DG
Steppe_EMBA
Chimp
0.3755
55.099
52191


.Parasar
Mbuti.DG
Steppe_EMBA
Chimp
0.3745
87.101
104362


.Kenji
Mbuti.DG
Steppe_EMBA
Chimp
0.3744
87.709
108236


.Zara
Mbuti.DG
Steppe_EMBA
Chimp
0.3737
80.738
108493


Makrani
Mbuti.DG
Steppe_EMBA
Chimp
0.3728
100
108756


Karitiana
Mbuti.DG
Steppe_EMBA
Chimp
0.3719
89.131
108756


.McNinja
Mbuti.DG
Steppe_EMBA
Chimp
0.3703
82.502
107793


.Varun
Mbuti.DG
Steppe_EMBA
Chimp
0.369
82.08
108055


Iranian_Bandari
Mbuti.DG
Steppe_EMBA
Chimp
0.3672
100
108622


.Reza1
Mbuti.DG
Steppe_EMBA
Chimp
0.3662
81.705
108011


Syrian
Mbuti.DG
Steppe_EMBA
Chimp
0.365
100
108756


Saudi
Mbuti.DG
Steppe_EMBA
Chimp
0.3642
100
108756


Iran_N
Mbuti.DG
Steppe_EMBA
Chimp
0.3558
63.312
86209


Palliyar
Mbuti.DG
Steppe_EMBA
Chimp
0.3555
68.15
45391


Kharia
Mbuti.DG
Steppe_EMBA
Chimp
0.3507
69.845
45391


Natufian
Mbuti.DG
Steppe_EMBA
Chimp
0.3467
46.832
43074


Onge
Mbuti.DG
Steppe_EMBA
Chimp
0.3449
60.422
45391


Han
Mbuti.DG
Steppe_EMBA
Chimp
0.3416
88.494
108756


Papuan
Mbuti.DG
Steppe_EMBA
Chimp
0.3142
71.924
108756


Mota
Mbuti.DG
Steppe_EMBA
Chimp
0.1108
19.981
108739


Yoruba
Mbuti.DG
Steppe_EMBA
Chimp
0.0943
29.913
108756

Kurd
08-21-2016, 07:48 PM
Cont. of post #7



.Kurd_F8
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0184
-2.542
78449


.Zephyrous
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0193
-2.568
78445


Iran_Chl
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0211
-2.707
70028


Makrani
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0221
-3.994
78762


.Reza1
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0244
-3.192
78323


.Zara
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0244
-3.115
78653


Iran_LN
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0258
-2.226
40444


.Varun
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.028
-3.81
78303


Iranian_Bandari
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0335
-5.954
78656


Syrian
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0383
-6.66
78762


Saudi
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0411
-6.991
78762


Iran_N
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.046
-4.839
65116


Han
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0477
-7.519
78762


Palliyar
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0498
-5.708
32376


Natufian
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0505
-4.074
33184


Kharia
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0592
-6.728
32376


Onge
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0644
-6.68
32376


Papuan
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.0836
-12.185
78762


Mota
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.3008
-38.755
78752


Yoruba
.Kurd_C2
Steppe_Eneolithic
Chimp
-0.3156
-54.348
78752

Kurd
08-21-2016, 08:07 PM
Most tables have been revised to reflect similar marker overlaps between the vast majority of samples. I had to prune back to 80-100K SNP to do that. Keep in mind Z would likely be higher with 400K comparisons.

Post 1 will be revised tonight.

Kurd
08-22-2016, 02:17 AM
Shared drift with Steppe Eneolithic:



POP1
POP2
TARGET
OUT
D
Z
SNPs


Tajik
Mota
Steppe_Eneolithic
Mbuti.DG
0.2831
53.629
80823


.Znertu
Mota
Steppe_Eneolithic
Mbuti.DG
0.2818
43.648
80403


Kalash
Mota
Steppe_Eneolithic
Mbuti.DG
0.2808
51.906
80823


Pathan
Mota
Steppe_Eneolithic
Mbuti.DG
0.2777
53.419
80823


.Mfa
Mota
Steppe_Eneolithic
Mbuti.DG
0.2768
41.3
79595


.Kurd_C2
Mota
Steppe_Eneolithic
Mbuti.DG
0.2764
42.382
80579


Pashtun_Afghan
Mota
Steppe_Eneolithic
Mbuti.DG
0.2763
48.499
76616


.Kurd_F4
Mota
Steppe_Eneolithic
Mbuti.DG
0.2756
41.082
80515


.Kurd_F1
Mota
Steppe_Eneolithic
Mbuti.DG
0.2754
44.35
80680


.Kurd_C3
Mota
Steppe_Eneolithic
Mbuti.DG
0.2749
43.324
80654


GujaratiA
Mota
Steppe_Eneolithic
Mbuti.DG
0.2747
49.381
80823


.Kurd_F7
Mota
Steppe_Eneolithic
Mbuti.DG
0.2736
42.604
80671


Iranian_Mazandarani
Mota
Steppe_Eneolithic
Mbuti.DG
0.2736
51.206
80715


.Kurd_F3
Mota
Steppe_Eneolithic
Mbuti.DG
0.2733
42.959
80669


Iranian_Lori
Mota
Steppe_Eneolithic
Mbuti.DG
0.2724
50.456
80715


.Kurd_F2
Mota
Steppe_Eneolithic
Mbuti.DG
0.2715
42.039
80533


.Kurd_C1
Mota
Steppe_Eneolithic
Mbuti.DG
0.2707
42.533
80498


Iranian
Mota
Steppe_Eneolithic
Mbuti.DG
0.2706
50.135
80823


.Kurd_F6
Mota
Steppe_Eneolithic
Mbuti.DG
0.2702
40.339
77380


Balochi
Mota
Steppe_Eneolithic
Mbuti.DG
0.2702
51.007
80823


.Sein
Mota
Steppe_Eneolithic
Mbuti.DG
0.2701
41.22
80067


Iranian_Shirazi
Mota
Steppe_Eneolithic
Mbuti.DG
0.2697
51.165
80715


Iran_Chl
Mota
Steppe_Eneolithic
Mbuti.DG
0.2693
40.238
71863


Brahui
Mota
Steppe_Eneolithic
Mbuti.DG
0.2689
51.089
80823


.Kurd_F5
Mota
Steppe_Eneolithic
Mbuti.DG
0.2688
42.61
80685


.Kurd_F8
Mota
Steppe_Eneolithic
Mbuti.DG
0.2678
40.435
80455


GujaratiD
Mota
Steppe_Eneolithic
Mbuti.DG
0.2656
47.035
80823


Makrani
Mota
Steppe_Eneolithic
Mbuti.DG
0.2643
49.539
80823


.Zara
Mota
Steppe_Eneolithic
Mbuti.DG
0.2634
40.247
80603


Iranian_Bandari
Mota
Steppe_Eneolithic
Mbuti.DG
0.2535
47.328
80715


Iran_N
Mota
Steppe_Eneolithic
Mbuti.DG
0.2518
31.962
66850


Saudi
Mota
Steppe_Eneolithic
Mbuti.DG
0.2509
45.405
80823


Iran_LN
Mota
Steppe_Eneolithic
Mbuti.DG
0.2486
25.959
41603



Shared drift with Iran N:



POP1
POP2
TARGET
OUT
D
Z
SNPs


Iran_LN
Mota
Iran_N
Mbuti.DG
0.3188
32.295
46529


Iran_Chl
Mota
Iran_N
Mbuti.DG
0.2912
42.459
78922


.Kurd_C2
Mota
Iran_N
Mbuti.DG
0.2766
41.531
87968


.Kurd_F8
Mota
Iran_N
Mbuti.DG
0.275
40.482
87812


.Znertu
Mota
Iran_N
Mbuti.DG
0.2745
41.724
87779


Iranian_Mazandarani
Mota
Iran_N
Mbuti.DG
0.2743
49.167
88120


.Kurd_F4
Mota
Iran_N
Mbuti.DG
0.273
40.609
87880


.Kurd_F7
Mota
Iran_N
Mbuti.DG
0.273
39.923
88072


.Kurd_F3
Mota
Iran_N
Mbuti.DG
0.2728
39.753
88086


.Mfa
Mota
Iran_N
Mbuti.DG
0.2717
40.607
86871


Iranian_Lori
Mota
Iran_N
Mbuti.DG
0.2708
47.728
88120


.Kurd_C3
Mota
Iran_N
Mbuti.DG
0.2702
39.743
88050


.Kurd_F2
Mota
Iran_N
Mbuti.DG
0.2698
39.24
87921


.Kurd_F6
Mota
Iran_N
Mbuti.DG
0.2694
38.23
84263


Balochi
Mota
Iran_N
Mbuti.DG
0.2687
48.052
88235


.Zara
Mota
Iran_N
Mbuti.DG
0.2685
38.345
88000


.Kurd_F1
Mota
Iran_N
Mbuti.DG
0.2683
39.652
88078


Brahui
Mota
Iran_N
Mbuti.DG
0.2678
47.889
88235


.Kurd_F5
Mota
Iran_N
Mbuti.DG
0.2676
39.128
88087


Iranian
Mota
Iran_N
Mbuti.DG
0.267
46.791
88235


Iranian_Shirazi
Mota
Iran_N
Mbuti.DG
0.2669
47.454
88120


Kalash
Mota
Iran_N
Mbuti.DG
0.2668
46.714
88235


Pathan
Mota
Iran_N
Mbuti.DG
0.2654
48.269
88235


Makrani
Mota
Iran_N
Mbuti.DG
0.2652
47.819
88235


GujaratiA
Mota
Iran_N
Mbuti.DG
0.2645
46.197
88235


Tajik
Mota
Iran_N
Mbuti.DG
0.2645
47.698
88235


.Sein
Mota
Iran_N
Mbuti.DG
0.2641
37.966
87395


Pashtun_Afghan
Mota
Iran_N
Mbuti.DG
0.2585
42.904
83381


Iranian_Bandari
Mota
Iran_N
Mbuti.DG
0.2548
44.64
88120


GujaratiD
Mota
Iran_N
Mbuti.DG
0.2536
42.869
88235


Saudi
Mota
Iran_N
Mbuti.DG
0.2481
43.381
88235




Some samples were removed from graph because of cluttering. Some Kurds are both more Iran N shifted as well as Eneolithic shifted compared with the other Asians

http://i.imgur.com/NCN7uv8.jpg

Kurd
08-22-2016, 02:20 AM
Shared drift with EHG



POP1
POP2
TARGET
OUT
D
Z
SNPs


Tajik
Mota
EHG
Mbuti.DG
0.2865
64.784
109373


Kalash
Mota
EHG
Mbuti.DG
0.2849
62.706
109373


Pathan
Mota
EHG
Mbuti.DG
0.2787
61.714
109373


Pashtun_Afghan
Mota
EHG
Mbuti.DG
0.2784
57.492
103917


.Znertu
Mota
EHG
Mbuti.DG
0.2783
50.081
108867


.Mfa
Mota
EHG
Mbuti.DG
0.2781
50.062
107759


.Sein
Mota
EHG
Mbuti.DG
0.2773
50.001
108409


GujaratiA
Mota
EHG
Mbuti.DG
0.276
58.247
109373


.Kurd_F1
Mota
EHG
Mbuti.DG
0.2739
49.504
109176


.Kurd_F3
Mota
EHG
Mbuti.DG
0.2735
50.187
109171


.Kurd_F2
Mota
EHG
Mbuti.DG
0.2728
48.221
108998


.Kurd_F5
Mota
EHG
Mbuti.DG
0.2727
47.413
109188


.Kurd_F6
Mota
EHG
Mbuti.DG
0.2725
47.158
104926


Iranian_Mazandarani
Mota
EHG
Mbuti.DG
0.2718
59.183
109236


.Kurd_F4
Mota
EHG
Mbuti.DG
0.2717
48.215
108984


Iranian_Lori
Mota
EHG
Mbuti.DG
0.2714
58.755
109236


Iranian
Mota
EHG
Mbuti.DG
0.2713
58.057
109373


.Kurd_C3
Mota
EHG
Mbuti.DG
0.2712
49.117
109166


.Kurd_F7
Mota
EHG
Mbuti.DG
0.2712
47.08
109170


Balochi
Mota
EHG
Mbuti.DG
0.271
59.57
109373


.Zara
Mota
EHG
Mbuti.DG
0.2709
46.732
109096


.Kurd_C2
Mota
EHG
Mbuti.DG
0.2702
49.073
109070


.Kurd_F8
Mota
EHG
Mbuti.DG
0.2699
49.214
108837


Brahui
Mota
EHG
Mbuti.DG
0.2685
59.083
109373


Iranian_Shirazi
Mota
EHG
Mbuti.DG
0.2681
58.54
109236


GujaratiD
Mota
EHG
Mbuti.DG
0.2666
56.276
109373


Makrani
Mota
EHG
Mbuti.DG
0.2639
57.897
109373


Iran_Chl
Mota
EHG
Mbuti.DG
0.2605
44.486
94074


Iranian_Bandari
Mota
EHG
Mbuti.DG
0.2562
55.391
109236


Iran_LN
Mota
EHG
Mbuti.DG
0.2556
30.685
52974


Saudi
Mota
EHG
Mbuti.DG
0.2505
52.553
109373


Iran_N
Mota
EHG
Mbuti.DG
0.2442
36.298
87188



http://i.imgur.com/28OSI0y.jpg

Varun R
08-22-2016, 03:42 AM
Kurd, what is the difference between Steppe_EMBA and Steppe_Eneolithic? It seems I have a lot of shared drift with Steppe_EMBA.....

Kurd
08-22-2016, 09:52 AM
Kurd, what is the difference between Steppe_EMBA and Steppe_Eneolithic? It seems I have a lot of shared drift with Steppe_EMBA.....

Steppe Eneolithic is a R1b1 sample from Khvalynsk Russia about 4500 years old, so it predates the Steppe EMBA, which are about 1000-1500 years younger. Steppe EMBA contains Yamnaya Samara & Yamnaya Kalmykia, and are about 50% EHG, and 50% CHG like.

Steppe Eneolithic has higher EHG, about 75% EHG and 25% Armenian like.