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Thread: How an outlier was born

  1. #1

    How an outlier was born

    From Boattini et al. 2013 we have 5 haplotypes from Sardinia: 3 R-M269* and 2 R-L23*.
    Olbia Tempio/Nuoro, tested 40: 2 R-M269* (5%)
    1 R-L23* (2,5%)

    Oristano, tested 42: 1 R-M269* (2,38%)
    1 R-L23* (2,38%)
    The R-L23* of Oristano is an outlier:

    864 Oristano 12 23 16 10 12 14 12 12 13 13 13 29 16 15 19 13 15 12 23 R1b1b2-M269 (xP311)

    These are the markers values in YHRD format:
    16 13-29 23 10 13 12 12-14
    No close match on YHRD. The closest are some Chinese but with DYS438=10, then some Asian haplogroup.
    The other R-L23 from Sardinia (Olbia Tempio/Nuoro) is this:

    806 OlbiaTempio/Nuoro 12 25 14 10 12 14 12 12 12 13 13 29 17 15 19 13 15 12 23 R1b1b2-M269 (xP311)

    in YHRD format
    14 13-29 25 10 13 12 12-14
    My haplotype is this (Gioiello Tognoni: KV7Y2, Pisa, Italy):
    15 13-29 24 10 13 12 11-14
    We clearly see that these haplotypes are ancient R-L23 of the Tyrrhenian coast from which probably arose the subclades of R-L23. We may hypothesize that the ancestral values of my haplotype were:
    15 13-29 24 10 13 12 12-14
    The haplotype from Oristano is an outlier. Also the R-L51* was an outlier:
    14 13-29 24 11 13 13 11-14
    but with more luck.
    Last edited by Rathna; 06-22-2013 at 10:23 AM.

  2. #2
    And how is an outlier this R-L51* from Pistoia? And there the R-L51 could be the 7,69%: 1 out 13 people tested:
    377 Pistoia 14 23 14 11 11 14 13 13 12 13 13 29 16 15 19 12 15 13 23 R1b1b2-M269 (xP311)

    DYS393=14
    DYS390=23
    DYS426=13 (like all the others)
    DYS388=13
    DYS438=13

    Probably many surprises could come from Tuscans!

  3. #3
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    Quote Originally Posted by Rathna View Post
    From Boattini et al. 2013 we have 5 haplotypes from Sardinia: 3 R-M269* and 2 R-L23*.
    Olbia Tempio/Nuoro, tested 40: R-M269* (5%)
    1 R-L23* (2,5%)

    Oristano, tested 42: 1 R-M269* (2,38%)
    1 R-L23* (2,38%)
    The R-L23* of Oristano is an outlier:

    864 Oristano 12 23 16 10 12 14 12 12 13 13 13 29 16 15 19 13 15 12 23 R1b1b2-M269 (xP311)

    These are the markers values in YHRD format:
    16 13-29 23 10 13 12 12-14
    No close match on YHRD. The closest are some Chinese but with DYS438=10, then some Asian haplogroup.
    The other R-L23 from Sardinia (Olbia Tempio/Nuoro) is this:

    806 OlbiaTempio/Nuoro 12 25 14 10 12 14 12 12 12 13 13 29 17 15 19 13 15 12 23 R1b1b2-M269 (xP311)

    in YHRD format
    14 13-29 25 10 13 12 12-14
    My haplotype is this (Gioiello Tognoni: KV7Y2, Pisa, Italy):
    15 13-29 24 10 13 12 11-14
    We clearly see that these haplotypes are ancient R-L23 of the Tyrrhenian coast from which probably arose the subclades of R-L23. We may hypothesize that the ancestral values of my haplotype were:
    15 13-29 24 10 13 12 12-14
    The haplotype from Oristano is an outlier. Also the R-L51* was an outlier:
    14 13-29 24 11 13 13 11-14
    but with more luck.
    Sardinia seems to be an important part of R1b history.
    R-M269*,R-L23* and R-L51* are people who havent found any SNPs downstream that are known at present.
    It took me six years to find a downstream SNP of U106* and I am now Z156*.

  4. #4
    Quote Originally Posted by dartraighe View Post
    Sardinia seems to be an important part of R1b history.
    R-M269*,R-L23* and R-L51* are people who havent found any SNPs downstream that are known at present.
    It took me six years to find a downstream SNP of U106* and I am now Z156*.
    Actually this isn't true. We have now the SNPs of Geno 2.0, those signed PF (Paolo Francalacci who gave 10,000 Sardinian samples), and now we have:
    downstream R-M269, the three SNPs found in the Jewish cluster, but also in a Greek and in an American of probably Greek descent, I have spoke about a lot on Worldfamilies:
    PF7558, PF7562, PF7563
    and probably they will be also amongst these three Sardinians tested by Boattini I spoke about above
    Downstream R-L23 we have Z2103 to Z2110
    Downstream R-L51 we have Z2111 to Z2120
    Some of these SNPs have also a Sardinian signature with PF.
    Last edited by Rathna; 06-22-2013 at 10:24 AM.

  5. #5
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    Thanks to the title of this thread I now have Johny Mathis 'when a star was born' going through my head in midsummer.

  6. #6
    Quote Originally Posted by alan View Post
    Thanks to the title of this thread I now have Johny Mathis 'when a star was born' going through my head in midsummer.
    Of course I lack all you have: background, people, songs, the language itself, etc. But we are speaking of genetics, and you too, if look at it carefully, may see that this "Pistoiese" R-L51* has the highest variance found so far amongst the R-L51* all over the world! And this probably is worth something.

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    Quote Originally Posted by Rathna View Post
    Of course I lack all you have: background, people, songs, the language itself, etc. But we are speaking of genetics, and you too, if look at it carefully, may see that this "Pistoiese" R-L51* has the highest variance found so far amongst the R-L51* all over the world! And this probably is worth something.
    Has somebody run variance on these?
    Paternal: R1b-U152 >> L2 >> FGC10543 >> PR5365, Pietro Rocca, b. 1559, Agira, Sicily, Italy
    Maternal: H4a1-T152C!, Maria Coto, b. ~1864, Galicia, Spain
    Mother's Paternal: J1+ FGC4745/FGC4766+ PF5019+, Gerardo Caprio, b. 1879, Caposele, Avellino, Campania, Italy
    Father's Maternal: T2b-C150T, Francisca Santa Cruz, b.1916, Garganchon, Burgos, Spain
    Paternal Great (x3) Grandfather: R1b-U106 >> L48 >> CTS2509, Filippo Ensabella, b.~1836, Agira, Sicily, Italy

  8. #8
    Quote Originally Posted by Richard A. Rocca View Post
    Has somebody run variance on these?
    Richard, if you look at the markers values I posted above, you can see that also with so few markers, if we compare the variance of the 22 slowest markers of Klyosov, we would already be at 12,000 years BP for the variance in DYS426, DYS388 and DYS438. Of course I would be curious to see the 67 markers of this "Pistoiese".

  9. #9
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    Quote Originally Posted by Rathna View Post
    Richard, if you look at the markers values I posted above, you can see that also with so few markers, if we compare the variance of the 22 slowest markers of Klyosov, we would already be at 12,000 years BP for the variance in DYS426, DYS388 and DYS438. Of course I would be curious to see the 67 markers of this "Pistoiese".
    Three STRs is a bit skimpy, particularly if we are talking about a handful of haplotypes, but I think it would be noteworthy if we've found a 426=12 L51xL11 guy. Is Pistoiese 426=12?

  10. #10
    Quote Originally Posted by Mikewww View Post
    Is Pistoiese 426=12?
    We haven't a SNP test, and I think that this haplotype is a R-L51 just for its DYS426=13. Anyway the other mutations are noteworthy; DYS388=13 from 12 and DYS438=13 from 12, and these are two of the slowest markers, comprised amongst the 22 of Klyosov. I understand your skepticism, but I think that with the other hundreds of thousands R-L51 that should be in Tuscany (4% also for 1KGP, 7,69% in Pistoia Province) it will be very hard for you.

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