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Thread: Dante Labs (WGS)

  1. #491
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    Quote Originally Posted by aaronbee2010 View Post
    Whole Genome Sequence with mtDNA for 199.00 with discount code: JUSTFORME199

    Offer only valid until Sunday 17th February
    This discount code is still working. I ordered mine today.

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  3. #492
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    This is the link again for ordering the BAM, it costs e59.00

    https://www.dantelabs.com/products/5...-your-raw-data
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019, Chronomics Jan 2020) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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  5. #493
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    Quote Originally Posted by aaronbee2010 View Post
    Whole Genome Sequence with mtDNA for 199.00 with discount code: JUSTFORME199

    Offer only valid until Sunday 17th February
    I see the post before mine stated that this discount code is still active.

    Just adding one bit of information: for the Dante kit that I have been working with, which was ordered as the WGS product from Amazon on Prime Day, had ZERO records in the VCF file mapped to mitochondrial DNA. Once I receive the BAM, I expect to be able to pull out mtDNA reads, but in the meantime anyone wanting mtDNA calls may want to focus on ordering a product that specifically calls out the return of mtDNA results like this one above does.

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  7. #494
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    Quote Originally Posted by bjp View Post
    I see the post before mine stated that this discount code is still active.

    Just adding one bit of information: for the Dante kit that I have been working with, which was ordered as the WGS product from Amazon on Prime Day, had ZERO records in the VCF file mapped to mitochondrial DNA. Once I receive the BAM, I expect to be able to pull out mtDNA reads, but in the meantime anyone wanting mtDNA calls may want to focus on ordering a product that specifically calls out the return of mtDNA results like this one above does.
    This shouldn't surprise anyone but I just tried this code on the US site and it doesn't work. I did get an order in in February and the returned kit was confirmed "delivered to the garage or an alternate location at the address at 3:39 pm on February 25, 2019 in DRAPER, UT 84020."

    Sadly the status is still unchanged as "Waiting confirmation from Dante Labs". I suppose others in my cohort are still waiting on acknowledgment too? I'm in it for the long haul, as long as they don't go bankrupt and I get my results in the next year or so I'll be okay with that.

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  9. #495
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    Quote Originally Posted by ntk View Post
    This shouldn't surprise anyone but I just tried this code on the US site and it doesn't work. I did get an order in in February and the returned kit was confirmed "delivered to the garage or an alternate location at the address at 3:39 pm on February 25, 2019 in DRAPER, UT 84020."

    Sadly the status is still unchanged as "Waiting confirmation from Dante Labs". I suppose others in my cohort are still waiting on acknowledgment too? I'm in it for the long haul, as long as they don't go bankrupt and I get my results in the next year or so I'll be okay with that.
    My status remains at "Waiting confirmation at Dante Labs" as well. I know from tracking that they received my kit on Friday 1st March, and the name of the person who signed for the parcel was the same person on the labels of the parcel shipped to me and the parcel shipped back to Dante Labs. I'm considering sending them an email if the status doesn't change within a week.

    The only explanation on their part I can think of is that they deal with kits in batches as opposed to individually?

    I did buy this knowing it would take up to a year to see my results though.

    Also, the code only works on the EU site however, US users can use a VPN to access the EU site and make an order with that discount code.
    YFull: YF67680 (FTDNA - IN41220)

    Ancestral Haplos (Punjabi Jatt):
    * Father: R2-SK2142 > Y1383 - M5a1a
    * Maternal Uncle: R1b-Z2109 > Y35099 - U7a3a
    * MGMs F (?): L-M22 > M357 - ?
    * PGMs F (?): Q-F1096 > L712 - ?
    * MGMs MGF: R1a-Z93 > Y7 - ?

    Friends haplos:
    * North Moroccan Berber: E-M35 > M81 - R0
    * Han Chinese: O-M117 > F1531 - M7e
    * Gujarati Lohana: T-M70 > Y11151 - R30b1

    Hidden Content

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  11. #496
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    Right, I have today picked up the HDD with my raw data from DHL (after kit ordered in mid-August 2018, kit delivered in Rome in Sept-2018, VCF file provided online in Dec-2018 plus explicit order for including me in HDD queue.... HDD received ~15 weeks after that).
    There are several folders with various files with totally of ~235 Gb. First of all- I can see the bam file, but no file with extention fastq...
    Here anyone with experience would be of great hep for me. I can upload folders screenshots if needed.
    So question one: which would be the extention /name of the fastq file.
    Question two: As far as YFULL accepts online link only to raw data files, any ideas about cloud data storage of 115 to 240 Gb, preferably for cost-effective and shorter period of time?
    Last edited by Tonev; 03-14-2019 at 06:49 PM.

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  13. #497
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    They should be hard to miss due to their size, my YSEQ ones are gzipped but inside the zip they are .fastq

    Sample_wgs-S582Nr65_skewertemp-trimmed-pair2.fastq is one.

    I have two as they are paired end and size around 21Gb zipped each.

    E37\fastq>dir
    Volume in drive E has no label.

    Directory of E37\fastq

    11/02/2019 11:23 <DIR> .
    11/02/2019 11:23 <DIR> ..
    07/02/2019 17:07 21,110,731,423 37_R1.fastq.gz
    07/02/2019 17:10 22,246,362,628 37_R2.fastq.gz
    2 File(s) 43,357,094,051 bytes
    2 Dir(s) 47,915,073,536 bytes free

    :-)
    Last edited by MacUalraig; 03-14-2019 at 07:16 PM.
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019, Chronomics Jan 2020) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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  15. #498
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    For YFull I would extract a Y only BAM using samtools and just upload that rather than the whole thing. Stick it on google drive or equivalent and send them a share to it.

    Something like:

    samtools view ginormous.bam chrY -b > YFull_y.bam
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019, Chronomics Jan 2020) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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  17. #499
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    Quote Originally Posted by Tonev View Post
    Right, I have today picked up the HDD with my raw data from DHL (after kit ordered in mid-August 2018, kit delivered in Rome in Sept-2018, VCF file provided online in Dec-2018 plus explicit order for including me in HDD queue.... HDD received ~15 weeks after that).
    There are several folders with various files with totally of ~235 Gb. First of all- I can see the bam file, but no file with extention fastq...
    Here anyone with experience would be of great hep for me. I can upload folders screenshots if needed.
    So question one: which would be the extention /name of the fastq file.
    Question two: As far as YFULL accepts online link only to raw data files, any ideas about cloud data storage of 115 to 240 Gb, preferably for cost-effective and shorter period of time?
    I received my Hard Drive with raw data from Dante Labs back in July, 2018.
    There were 8 pairs of fastq files, e.g.
    CL100065945_L02_562_1.fq.gz
    CL100065945_L02_562_2.fq.gz
    Last edited by pmokeefe; 03-14-2019 at 10:02 PM. Reason: typo
    YFull: YF14620 (Dante Labs 2018)

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  19. #500
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    Quote Originally Posted by pmokeefe View Post
    I received my Hard Drive with raw data from Dante Labs back in July, 2018.
    There were 8 pairs of fastq files, e.g.
    CL100065945_L02_562_1.fq.gz
    CL100065945_L02_562_2.fq.gz
    Any advise on sources for their interpretation?

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