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Thread: Dante Labs (WGS)

  1. #991
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    Poland England Ireland Munster
    There was supposed to be a link up between sequencing.com and Dante Labs. I signed up for that and received this email from Dante Labs.
    Dante-Labs [email protected] via freshdesk.com
    Wed, Jul 17, 1:20 PM
    to notification, me


    Hello,

    Thank you for your message

    We are going to import your raw data to your sequencing.com account within the next 48 hours.

    Please let me know if there is anything else we may assist you with.

    Kind regards,

    Lenox
    I just checked sequencing.com, I could find no evidence that the import ever occurred. At least there was no charge. Did anyone else ever successfully import their Dante Labs data directly into sequencing.com?
    YFull: YF14620 (Dante Labs 2018)

  2. #992
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    Webinar registration link up now running 4-5pm GMT

    https://register.gotowebinar.com/reg...50781977895435
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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     pmokeefe (11-09-2019)

  4. #993
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    My BAM file is uploaded!! I just wanted to check before I complained live on air and there it was, must have gone up in the last 24h to head off the publicity.
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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     pmokeefe (11-09-2019)

  6. #994
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    Did anyone else watch the webinar with Andrea Riposati just now (8am PST)? He acknowledged several customer issues (delays, raw data, etc). Did anyone feel like their issue was not even mentioned, or poorly addressed?

    Also, thanks to MacUalraig for the heads up, I would have missed it otherwise.
    YFull: YF14620 (Dante Labs 2018)

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     MacUalraig (11-09-2019)

  8. #995
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    Quote Originally Posted by MacUalraig View Post
    My BAM file is uploaded!! I just wanted to check before I complained live on air and there it was, must have gone up in the last 24h to head off the publicity.
    When did you place your order for that kit?
    YFull: YF14620 (Dante Labs 2018)

  9. #996
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    Quote Originally Posted by pmokeefe View Post
    When did you place your order for that kit?
    Sample kit signed for back at Dante Jul 25th 2018, VCFs uploaded Mar 5th 2019. Hard disk fee paid following day.
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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  11. #997
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    I would also thank MacUalraig for the notice, as I would not have known about it otherwise, although I assume they will post a link to the recording.

    His explanation would cover the majority of complaints I have seen. I like the explanation, even if it is late in coming and downplays the shenanigans. I apparently am one of the "50 or so" that are being sent a new kit since they apparently lost my data along the way. I received VCF files but nothing else. I guess I am hopeful they really are going to fulfill all issues (and prioritize that), but we will have to see if that pans out. I have basically gotten lots of excuses in the past without any actual results.

    The email I got from them was a little lacking on an apology. They indicated they would send me a new kit and sequence a new sample as a "gift" from them, yet I paid for those results, including a hard drive, a year ago. Calling it a gift is humorous.
    Last edited by rippleish20; 11-09-2019 at 05:12 PM.

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  13. #998
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    OK quick peek and its hg19. Y now split off and on its way to YFull*. Will download the FASTQs tomorrow and align them.

    Interestingly all the FGC novel variants that were missing from the VCF are present and I'd say callable in the BAM. We'll see what some alternate callers say.

    *on second thoughts maybe I'll upload it after I realign it.
    Last edited by MacUalraig; 11-09-2019 at 08:38 PM.
    YSEQ:#37; YFull: YF01405 (Y Elite 2013)
    WGS (Full Genomes Nov 2015, YSEQ Feb 2019, Dante Mar 2019, FGC-10X Linked Reads Apr 2019, Dante-Nanopore May 2019) - further WGS tests pending ;-)
    Ancestry GCs: Scots in central Scotland & Ulster, Ireland; English in Yorkshire & Pennines
    Hidden Content
    FBIMatch: A828783 (autosomal DNA) for segment matching DO NOT POST ADMIXTURE REPORTS USING MY KIT

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     pmokeefe (11-09-2019)

  15. #999
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    Czech Republic Austria Austrian Empire Bohemia Carinthia
    Just received refund for 2 HDDs ordered on April 4th and never sent.
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  17. #1000
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    Ulysses, 100.000 whole genomes that's 130+ whole genomes per each working day for that three years. "Sequencing will be performed by Dante Labs in its high-output sequencing centre in Italy." Did they announce the capacity of their new sequencing center, because uh... On the flip side, they do need to keep that sequencing center busy to cover the fixed costs, so this makes sense if as it seems they have funding and perhaps can fulfill the requisite capacity. One might also do well to look at the Human Genetic Diversity Project and the ensuing political/ethical fallout, which led among other things to the stipulation that genetic research should be as far as possible conducted in the region of interest so the benefits flow to them. If their partners, perhaps in the region, are willing to heed off that fallout though... but it seems bit over-ambitious, especially since I'm not sure they've even started their ora microbiome sequencing project which was announced earlier.

    Also I just noticed their press-release says "leading DNA sequencing company"...

    Is the webinar still available anywhere, missed it myself and nobody reporting what they actually said.

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