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Thread: Lukasz' K47 PCA

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    Lukasz' K47 PCA

    Perhaps it's time to launch operations for a definitive PCA for Lukacz's K47 admixtures calculator. You just have to post or repost your results with the last version (that is the definitive version, according to Lukacz himself). If you are not certain, you can find the files on https://drive.google.com/file/d/1fk2...ovtIle9Qr/view.
    PLEASE, POST YOUR RESULTS NOT SORTED, IN THE ORIGINAL ORDER, IN THE FORM BELOW:

    mom_phased,0.00,10.63,2.75,0.00,0.00,0.00,0.00,2.5 4,0.00,0.00,0.00,0.03,0.00,0.00,0.00,0.00,11.27,0. 00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,16.16,15.88, 0.00,10.94,0.41,0.00,0.00,0.00,0.00,0.00,15.93,0.0 0,0.00,0.00,6.28,0.00,0.00,0.00,0.00,3.26,0.00,3.9 2

    You can easily find that list: just after the analysis on R, edit the file named "genomewide", replace the 'space' with ',', then replace ',,,' with ',' and finaly ',,' with ','. Then you just have to copy and paste the second line.
    Last edited by anglesqueville; 01-08-2018 at 01:31 PM. Reason: spelling
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  3. #2
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    Quote Originally Posted by anglesqueville View Post
    Perhaps it's time to launch operations for a definitive PCA for Lukacz's K47 admixtures calculator. You just have to post or repost your results with the last version (that is the definitive version, according to Lukacz himself). If you are not certain, you can find the files on https://drive.google.com/file/d/1fk2...ovtIle9Qr/view.
    PLEASE, POST YOUR RESULTS NOT SORTED, IN THE ORIGINAL ORDER, IN THE FORM BELOW:

    mom_phased,0.00,10.63,2.75,0.00,0.00,0.00,0.00,2.5 4,0.00,0.00,0.00,0.03,0.00,0.00,0.00,0.00,11.27,0. 00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,16.16,15.88, 0.00,10.94,0.41,0.00,0.00,0.00,0.00,0.00,15.93,0.0 0,0.00,0.00,6.28,0.00,0.00,0.00,0.00,3.26,0.00,3.9 2

    You can easily find that list: just after the analysis on R, edit the file named "genomewide", replace the 'space' with ',', then replace ',,,' with ',' and finaly ',,' with ','. Then you just have to copy and paste the second line.
    Please change title to Lukasz

    My data & parents will be posted soon
    Last edited by lukaszM; 01-08-2018 at 01:24 PM.
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    Quote Originally Posted by lukaszM View Post
    Please change title to Lukasz
    Soooo sorry Lukasz! If someone could tell me how I can rectify the title of a thread, I would be very grateful.
    En North alom, de North venom
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    Quote Originally Posted by anglesqueville View Post
    Soooo sorry Lukasz! If someone could tell me how I can rectify the title of a thread, I would be very grateful.
    Ok no problem if it isn't possible. Maybe there is something like advanced edition?
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    Here we go:

    Code:
    SangariusPP,0.00,2.02,0.00,0.05,0.55,17.96,9.94,3.91,6.30,1.02,0.00,10.57,0.00,0.00,0.00,3.59,7.76,0.00,0.00,0.01,0.76,0.00,1.77,4.70,3.02,0.00,0.08,0.00,3.37,0.01,0.00,1.81,0.00,0.00,0.08,0.00,3.48,0.00,0.50,1.80,0.00,0.00,0.00,1.09,4.65,2.12,7.07
    SangariusPM,0.04,4.16,0.05,0.03,0.08,17.44,12.11,3.51,9.00,0.00,0.08,18.00,0.25,0.00,0.73,3.56,0.06,0.00,0.00,0.00,0.01,0.03,2.37,3.34,0.18,2.97,1.74,0.00,0.05,0.91,0.00,0.22,0.00,0.19,1.03,0.00,7.19,0.00,0.00,0.03,0.00,0.00,0.00,0.00,3.64,3.65,3.34
    SangariusMP,0.00,0.00,0.60,0.00,0.00,34.58,14.96,6.57,0.00,0.00,0.00,22.08,0.00,0.00,0.00,5.75,0.00,0.00,0.00,0.00,1.10,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.43,0.00,0.00,0.00,0.01,7.87,0.00,0.00,0.00,0.00,0.00,0.00,0.00,1.98,0.00,4.06
    SangariusMM,0.00,0.00,0.63,0.00,0.00,31.73,17.17,5.00,0.00,0.00,0.00,20.21,0.00,0.00,0.00,10.51,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.00,0.01,0.00,0.00,0.00,0.00,0.02,0.00,0.00,0.00,0.00,8.95,0.00,0.00,0.00,0.00,0.00,0.00,0.00,3.31,0.00,2.47
    Sangarius,0.00,2.86,0.11,0.31,0.09,25.93,11.98,4.17,1.36,0.00,0.01,20.06,0.06,0.00,0.01,6.90,0.03,0.00,0.00,1.39,1.06,0.00,2.38,0.00,0.18,0.00,1.94,0.11,0.00,0.00,0.00,0.00,0.00,1.18,0.00,0.00,5.14,0.00,0.00,0.00,0.00,0.00,0.00,0.16,3.38,3.84,5.35

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    Quote Originally Posted by lukaszM View Post
    Ok no problem if it isn't possible. Maybe there is something like advanced edition?
    Done!
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

  11. #7
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    M13'46'61

    India China Tajikistan Mongolia Russian Federation Papua New Guinea
    Does this have Kushitic as first?

  12. #8
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    Yes, Kushitic as first.
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

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    Kurdistan
    The link for the calculator files in your original post is not correct. It does not open any web site.


    Below are the values for the three Kurdish members

    Code:
    Lupus82,0,3.18,0,0,0,20.33,13.24,5.52,0,0,0,14.14,0.02,1.12,0,6.58,0,0.24,0,0,0.61,0,0,0,0,0,0,0,0,0,0,3.92,0,0,0,0.87,17.94,0,0.07,2.22,0,0,0,0.67,1.66,3.04,4.63
    Magnetic,0.5,0,0.03,0,0.04,11.48,13.99,7.78,0,0.93,0,18.3,0,0,0.56,8.19,0,0,0.29,0,1.19,0.28,0,0,0,1.72,0.38,0,0,0,0.38,3.7,0,0.2,0,0.01,21.14,0,0,0,0,0,0.04,0,0.88,2.98,4.98
    Zoran,0.06,1.07,0.79,0,2.77,15.33,21.14,3.98,0,0,0,15.41,0.06,0,0,7.78,0,0.06,0,0,3.06,0,0.44,0,0,0.01,0,0,0,0,0,0.37,0,0,0,0.34,16.44,0,0,0,0,0,0,0.33,2.25,8.24,0.07

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    Quote Originally Posted by Lupus82 View Post
    The link for the calculator files in your original post is not correct. It does not open any web site.
    https://drive.google.com/open?id=1fk...OQ_LmovtIle9Qr
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