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Thread: Promethease & Imputation

  1. #1
    Registered Users

    Solomon Islands Acadia

    Promethease & Imputation

    Does anyone knows how is possible that an imputed file from DNA.LAND using my 23andme V5 file, in some topics has lost some SNPs that exists in the source 23andme V5 file and Promethease identifies clearly? Maybe something wrong during imputation?

    Promethease 23andme V5
    Attachment 21104

    Promethease DNA.LAND Imputed from 23andme V5 file
    Attachment 21105
    Last edited by wilhelmhalys; 01-30-2018 at 06:16 PM.

  2. #2
    Registered Users

    Solomon Islands Acadia
    I just got an answer from Roberta Estes, it seems that there should be something not working properly during imputation.
    This can be applied for matching and ancestry subjects..

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