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Thread: Question about 23andme

  1. #1
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    Question about 23andme

    On Ybrowse

    M215 (E1b1b) rs2032654 13355944 A>G

    On 23andme

    rs2032654 15467824 A or G

    On YSEQ
    (same as Ybrowse)

    another example...

    On Ybrowse
    L117 (E1b1b) rs34812786 12914721 C>T

    On 23andme

    rs34812786 15026633 C or T

    same rs number and genotype but different Genomic Position, why?

  2. #2
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    Ybrowse uses hg38 now. 23andme uses hg19. There is a file called snps_hg19.csv at http://ybrowse.org/gbrowse2/gff/ that you can use to look up the positions. 23andme is very limited with the E1b1b subclades. I included them in a spreadsheet that I posted them on a thread about 23andme v5 using snps_hg19.csv as a cross-reference and included the longhand name. The thread is in the 23andme sub forum here.
    Last edited by ArmandoR1b; 03-21-2018 at 12:39 AM.

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  4. #3
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    So are they equal or different?

  5. #4
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    Quote Originally Posted by RedBlazedNugguts View Post
    So are they equal or different?
    Same shorthand SNP, rs id, and mutation. Different genomic position because of change from hg19 to hg38.
    Last edited by ArmandoR1b; 03-21-2018 at 06:34 PM.

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     Onur Dincer (03-21-2018),  Saetro (03-21-2018)

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