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Thread: Updated BAM Analysis Kit. Any interest?

  1. #111
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    I have released a new version for Windows and an experimental version for Linux.

    https://anthrogenica.com/showthread....x)-New-release

  2. #112
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    is this update faster than original bam analysis kit

  3. #113
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    Quote Originally Posted by crossover View Post
    is this update faster than original bam analysis kit
    Most of the operations are faster than in the original BAM Analysis Kit.

  4. #114
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    Quote Originally Posted by teepean47 View Post
    Most of the operations are faster than in the original BAM Analysis Kit.
    good since last time i used original on ancient dna on pericues and tamahuara, it took hours(i forgot how many) to process each one individually

  5. #115
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    Quote Originally Posted by teepean47 View Post
    I have released a new version for Windows and an experimental version for Linux.

    https://anthrogenica.com/showthread....x)-New-release
    Successfully tested on the E sample from Peqi'in (I1171). Returned it as:

    E1b1b1b2a1a1~ E-S26174 /etc*
    (xY21769,Y15443,M136,Y6184,Y15703,Z21034)
    S26174 appears to be equivalent to E-M84. Interesting! Thank you very much!
    "To know nothing of what happened before you were born is to remain forever a child" ― Marcus Tullius Cicero

  6. The Following 2 Users Say Thank You to AbdoNumen For This Useful Post:

     JMcB (06-03-2019),  Pribislav (06-03-2019)

  7. #116
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    Quote Originally Posted by crossover View Post
    good since last time i used original on ancient dna on pericues and tamahuara, it took hours(i forgot how many) to process each one individually
    That really depends on how fast processor your computer has. GATK is slow and annotating the results takes time as gawk processes using single core.

  8. #117
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    Thank you Teepean47 from a fellow Finn!

    I was able to double the Levšnluhta JK2065 individual's SNP coverage by your version of the kit.
    I'm not versed in the background nyself, but I'm glad someone took the trouble.

    I posted before with the actual results before/after shown in another thread.
    Last edited by Puntanen; 06-12-2019 at 03:50 PM.

  9. The Following User Says Thank You to Puntanen For This Useful Post:

     teepean47 (06-12-2019)

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