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Thread: O-M117 research collaboration

  1. #11
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    Quote Originally Posted by fjnj View Post
    Some of these snps are known snps, and the list used by FTDNA is not up to date. There are probably also wrong calls because they mixed up the ancestral vs the derived allele. If you plan to have the BAM file analyzed by Y-Full or someone else, you will have better ideas about exactly which are really useful novel snps.
    I've already submitted the BAM to ISOGG, and just waiting for the confirmation.

  2. #12
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    Great. Hopefully they will find some useful novel snps.

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     william0509 (01-20-2016)

  4. #13
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    The administrator Owen had updated the O tree in ISOGG.

    • • • • • • • • • O2a2b1a1a4 Z25853
    • • • • • • • • • • O2a2b1a1a4a CTS5492, CTS4789, CTS5063, CTS7418, CTS8299, CTS12655
    • • • • • • • • • • • O2a2b1a1a4a1 CTS6987, Z25902, Z25903, Z25905

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    Quote Originally Posted by fjnj View Post
    Great. Hopefully they will find some useful novel snps.
    Fjnj, I've only 12 private SNPs. I guess it means that the subclade CTS6987 is young compare to the other F5 subclades.

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     parasar (02-23-2016)

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    15 private SNPs are calculated for the subclade M117-CTS5492.
    Last edited by william0509; 02-23-2016 at 08:10 PM.

  8. #16
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    Attachment 7948


    Attachment 7949

    Update: This is my result of age of estimation. A Long bottleneck for this subclade, but the good news for me is that it is the first subclade which is under 2000 yrs in the Haplogroup O.
    Last edited by william0509; 02-23-2016 at 08:07 PM.

  9. #17
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    Quote Originally Posted by william0509 View Post
    Attachment 7948
    Attachment 7949

    Update: This is my result of age of estimation. Long bottleneck for this subclade, but the good news for me is that it is the first subclade which under 2000 yrs in Haplogroup O.
    That is surprisingly young. So we are looking at an MCA at the age of the three kingdoms :-).

  10. #18
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    Quote Originally Posted by william0509 View Post
    15 private SNPs are calculated for the subclade M117-CTS5492.
    YFull has CTS5492 at the O-CTS5063 level, TMRCA 2500 ybp.

  11. #19
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    Quote Originally Posted by lgmayka View Post
    YFull has CTS5492 at the O-CTS5063 level, TMRCA 2500 ybp.
    I'm the one who tested (YF05177), You are right, it is equivalent to CTS5063. YF05177

  12. #20
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    Quote Originally Posted by rock View Post
    288248 I saw his SNP is F3599+, F1870+. this branch likely related to Fujian Minnan or neighbouring area. You can compare with 1000 Genomes sample's SNPs

    F3599+, F1870+
    HG02122 KHV
    HG01852 KHV


    HGDP00822 Han

    F3599+, F1870-
    HGDP00821 Han
    NA18623 CHB
    HG00592 CHS

    I find closest STR match is
    2 steps at 23 STRs
    Sq0173 Singapore [Han] difference at DYS385a and DYS458
    2 steps at 26 STRs
    24 Shanghai Han difference at DYS390 and DYS458 (PP23+DYS388, DYS449, DYS460)

    288250's closest match at 23 STRs is 5 steps
    Sq0134 Singapore [Han] difference at DYS389b, DYS456, DYS576, DYS481(2 steps)
    Have you analyse the big Y result,what branch is 288250?
    Rock, can you tell me how did you find the STRs and haplogroup for HGDP00821 Han and HGDP00822 Han?

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