Page 1 of 2 12 LastLast
Results 1 to 10 of 15

Thread: 3D PCA plots

  1. #1
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia

    3D PCA plots

    My first try with former Yugoslav K15 samples:
    https://www.dropbox.com/s/plvos447bk...ion3.gif?raw=1
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  2. The Following 15 Users Say Thank You to ph2ter For This Useful Post:

     Просигој (04-11-2019),  Agamemnon (03-12-2019),  Aroon1916 (03-13-2019),  Dewsloth (03-12-2019),  Drewcastle (03-14-2019),  Erikl86 (03-12-2019),  IronHorse (03-12-2019),  JMcB (03-12-2019),  jonahst (03-12-2019),  Kaspias (03-12-2019),  michal3141 (03-13-2019),  Nino90 (03-13-2019),  Onur Dincer (03-12-2019),  oz (03-13-2019),  Thracian88 (03-12-2019)

  3. #2
    Gold Member Class
    Posts
    1,342
    Sex
    Location
    Florida, USA.
    Ethnicity
    English, Scottish & Irish
    Nationality
    American
    Y-DNA
    I-A13243
    mtDNA
    H1e2

    England Scotland Ireland United States of America Vatican Germany Schleswig-Holstein
    Quote Originally Posted by ph2ter View Post
    My first try with former Yugoslav K15 samples:
    https://www.dropbox.com/s/plvos447bk...ion3.gif?raw=1
    That’s cool! Is there a way to stop it or perhaps, rotate it yourself so that you can study the samples a little easier?
    Known Paper Trail: 45.3% English, 29.7% Scottish, 12.5% Irish, 6.25% German & 6.25% Italian. Or: 87.5% British Isles, 6.25% German & 6.25% Italian.
    LivingDNA: 88.1% British Isles (59.7% English, 27% Scottish & 1.3% Irish), 5.9% Europe South (Aegian 3.4%, Tuscany 1.3%, Sardinia 1.1%), 4.4% Europe NW (Scandinavia) & 1.6% Europe East, (Mordovia).
    FT Big Y: I1-Z140 branch I-F2642 >Y1966 >Y3649 >A13241 >Y3647 >A13248 (circa 930 AD) >A13242/YSEQ (circa 1075 AD) >A13243/YSEQ (circa 1660 AD).

  4. #3
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia
    Quote Originally Posted by JMcB View Post
    That’s cool! Is there a way to stop it or perhaps, rotate it yourself so that you can study the samples a little easier?
    I'm afraid there is no way, at least in a technology which I used.
    I can rotate it by myself, but I have the samples and the app.
    (This is done in R.)
    Maybe there on web exists some other way to do such things.
    Last edited by ph2ter; 03-12-2019 at 05:26 PM.
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  5. The Following 2 Users Say Thank You to ph2ter For This Useful Post:

     JMcB (03-12-2019),  Onur Dincer (03-12-2019)

  6. #4
    Registered Users
    Posts
    290
    Y-DNA
    I-Y16419
    mtDNA
    T2e1

    this is one of my favourites, from eurogenes

    http://www.open-genomes.org/analysis...lot_1-2-3.html
    Corruption of the soul is a fate that befalls the weak

  7. The Following 2 Users Say Thank You to IronHorse For This Useful Post:

     Onur Dincer (03-12-2019),  ph2ter (03-12-2019)

  8. #5
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia
    Quote Originally Posted by IronHorse View Post
    this is one of my favourites, from eurogenes

    http://www.open-genomes.org/analysis...lot_1-2-3.html
    My laptop almost died downloading your link :-)
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  9. The Following 3 Users Say Thank You to ph2ter For This Useful Post:

     IronHorse (03-12-2019),  Onur Dincer (03-12-2019),  Ruderico (03-12-2019)

  10. #6
    Gold Member Class
    Posts
    1,342
    Sex
    Location
    Florida, USA.
    Ethnicity
    English, Scottish & Irish
    Nationality
    American
    Y-DNA
    I-A13243
    mtDNA
    H1e2

    England Scotland Ireland United States of America Vatican Germany Schleswig-Holstein
    Quote Originally Posted by ph2ter View Post
    I'm afraid there is no way, at least in a technology which I used.
    I can rotate it by myself, but I have the samples and the app.
    (This is done in R.)
    Maybe there on web exists some other way to do such things.
    Well, it’s still a really cool way to view things! Will you be trying it on any other populations?
    Known Paper Trail: 45.3% English, 29.7% Scottish, 12.5% Irish, 6.25% German & 6.25% Italian. Or: 87.5% British Isles, 6.25% German & 6.25% Italian.
    LivingDNA: 88.1% British Isles (59.7% English, 27% Scottish & 1.3% Irish), 5.9% Europe South (Aegian 3.4%, Tuscany 1.3%, Sardinia 1.1%), 4.4% Europe NW (Scandinavia) & 1.6% Europe East, (Mordovia).
    FT Big Y: I1-Z140 branch I-F2642 >Y1966 >Y3649 >A13241 >Y3647 >A13248 (circa 930 AD) >A13242/YSEQ (circa 1075 AD) >A13243/YSEQ (circa 1660 AD).

  11. #7
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia
    Quote Originally Posted by JMcB View Post
    Well, itís still a really cool way to view things! Will you be trying it on any other populations?
    K13 Eurogenes :
    https://www.dropbox.com/s/ua67q8p1z1...ima1.gif?raw=1

    I can make a movie with translation and rotation at will.
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  12. The Following 9 Users Say Thank You to ph2ter For This Useful Post:

     Просигој (04-11-2019),  dchicn (03-13-2019),  Dewsloth (03-12-2019),  JMcB (03-13-2019),  Nino90 (03-13-2019),  Onur Dincer (03-12-2019),  oz (03-14-2019),  Ruderico (03-13-2019),  Sizzles (03-12-2019)

  13. #8
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia
    Here is my try of G25 Moderns Europe with Anthrogenica users:
    https://www.dropbox.com/s/35ifrfbutg...DG25.gif?raw=1

    Slightly zoomed:
    https://www.dropbox.com/s/uv9ye2hf4s...Zoom.gif?raw=1
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  14. The Following 7 Users Say Thank You to ph2ter For This Useful Post:

     Drewcastle (04-11-2019),  JMcB (03-13-2019),  oz (03-14-2019),  randwulf (03-13-2019),  Ruderico (03-13-2019),  rxavierflima (03-14-2019),  Theconqueror (03-13-2019)

  15. #9
    Registered Users
    Posts
    1,158
    Sex
    Location
    Viseu
    Ethnicity
    Romanised Paesuri
    Nationality
    Portuguese
    Y-DNA
    E-BY36857
    mtDNA
    H20

    Portugal 1143 Portugal 1485 Portugal Order of Christ
    Quote Originally Posted by ph2ter View Post
    Here is my try of G25 Moderns Europe with Anthrogenica users:
    https://www.dropbox.com/s/35ifrfbutg...DG25.gif?raw=1

    Slightly zoomed:
    https://www.dropbox.com/s/uv9ye2hf4s...Zoom.gif?raw=1
    Cool! Is that with unscaled coordinates?
    YDNA - E-Y31991>PF4428>BY36857. Domingos Rodrigues, b. circa 1680 Hidden Content , Viana do Castelo, Portugal
    mtDNA - H20. Maria Josefa de Almeida, b. circa 1750 Hidden Content , Porto, Portugal

    Global25 PCA West Eurasia dataset Hidden Content
    Hidden Content


    [1] "distance%=1.7726"

    Ruderico

    Celtiberian,77.6
    Roman_Imperial_proxy,13.6
    Guanche,8.8

  16. The Following 2 Users Say Thank You to Ruderico For This Useful Post:

     JMcB (03-13-2019),  ph2ter (03-13-2019)

  17. #10
    Registered Users
    Posts
    1,761
    Sex
    Location
    Zagreb
    Ethnicity
    Croat (NW)
    Nationality
    Croatian
    Y-DNA
    I2a1a2b (Y5596>A815)

    Croatia Austrian Empire Slovenia
    Quote Originally Posted by Ruderico View Post
    Cool! Is that with unscaled coordinates?
    Scaled.
     
    Paper Trail MyHeritage K36 G25 Mod. FTDNA
    NW Croatian 87.5%
    Slovenian 6.25%
    Unknown 6.25%
    E. Europe 35.7%
    Balkan 34.4%
    Scandinavia 21.2%
    Baltic 8.7%
    Grenzmark 0.94
    Czechs 0.93,
    Hungary 0.91
    Volhyn 0.91,
    C. Rusyns 0.91
    Slovenia 0.91
    Czech 1.79
    Hungarian 2.02
    Slovenian 2.07
    Croatian 2.39
    Ukrainian 3.01
    East Europe 99%
    Trace 1%

  18. The Following User Says Thank You to ph2ter For This Useful Post:

     JMcB (03-13-2019)

Page 1 of 2 12 LastLast

Similar Threads

  1. G25 PCA Plots
    By ph2ter in forum Ancient (aDNA)
    Replies: 331
    Last Post: 04-19-2019, 05:38 PM
  2. Creating PCA plots in PLINK
    By AbdoNumen in forum Inquiries Corner
    Replies: 0
    Last Post: 12-08-2018, 03:38 AM
  3. How much do PCA plots tell us?
    By Caratacus in forum General
    Replies: 29
    Last Post: 09-12-2016, 10:11 PM
  4. Replies: 52
    Last Post: 02-18-2015, 10:14 AM

Posting Permissions

  • You may not post new threads
  • You may not post replies
  • You may not post attachments
  • You may not edit your posts
  •