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Thread: 3D PCA plots

  1. #1
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    3D PCA plots

    My first try with former Yugoslav K15 samples:
    https://www.dropbox.com/s/plvos447bk...ion3.gif?raw=1
     
    All simple calculations, maps and plots I make for free, but for more complicated maps and calculations I ask for a donation via Hidden Content PayPalHidden Content account

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  3. #2
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    Quote Originally Posted by ph2ter View Post
    My first try with former Yugoslav K15 samples:
    https://www.dropbox.com/s/plvos447bk...ion3.gif?raw=1
    That’s cool! Is there a way to stop it or perhaps, rotate it yourself so that you can study the samples a little easier?
    Paper Trail: 43.8% English, 29.7% Scottish, 12.5% Irish, 6.25% German, 6.25% Italian & 1.5% French. Or: 86% British Isles, 6.25% German, 6.25% Italian & 1.5% French.
    LDNA(c): 86.3% British Isles (48.6% English, 37.7% Scottish & Irish), 7.8% NW Germanic, 5.9% Europe South (Aegian 3.4%, Tuscany 1.3%, Sardinia 1.1%)
    BigY 700: I1-Z140 >I-F2642 >Y1966 >Y3649 >A13241 >Y3647 >A13248 (circa 620 AD) >A13242/YSEQ (circa 765 AD) >FT80854 (circa 1650 AD).

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    Quote Originally Posted by JMcB View Post
    That’s cool! Is there a way to stop it or perhaps, rotate it yourself so that you can study the samples a little easier?
    I'm afraid there is no way, at least in a technology which I used.
    I can rotate it by myself, but I have the samples and the app.
    (This is done in R.)
    Maybe there on web exists some other way to do such things.
    Last edited by ph2ter; 03-12-2019 at 05:26 PM.
     
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    this is one of my favourites, from eurogenes

    http://www.open-genomes.org/analysis...lot_1-2-3.html

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    Quote Originally Posted by IronHorse View Post
    this is one of my favourites, from eurogenes

    http://www.open-genomes.org/analysis...lot_1-2-3.html
    My laptop almost died downloading your link :-)
     
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    Quote Originally Posted by ph2ter View Post
    I'm afraid there is no way, at least in a technology which I used.
    I can rotate it by myself, but I have the samples and the app.
    (This is done in R.)
    Maybe there on web exists some other way to do such things.
    Well, it’s still a really cool way to view things! Will you be trying it on any other populations?
    Paper Trail: 43.8% English, 29.7% Scottish, 12.5% Irish, 6.25% German, 6.25% Italian & 1.5% French. Or: 86% British Isles, 6.25% German, 6.25% Italian & 1.5% French.
    LDNA(c): 86.3% British Isles (48.6% English, 37.7% Scottish & Irish), 7.8% NW Germanic, 5.9% Europe South (Aegian 3.4%, Tuscany 1.3%, Sardinia 1.1%)
    BigY 700: I1-Z140 >I-F2642 >Y1966 >Y3649 >A13241 >Y3647 >A13248 (circa 620 AD) >A13242/YSEQ (circa 765 AD) >FT80854 (circa 1650 AD).

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    Quote Originally Posted by JMcB View Post
    Well, itís still a really cool way to view things! Will you be trying it on any other populations?
    K13 Eurogenes :
    https://www.dropbox.com/s/ua67q8p1z1...ima1.gif?raw=1

    I can make a movie with translation and rotation at will.
     
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    Here is my try of G25 Moderns Europe with Anthrogenica users:
    https://www.dropbox.com/s/35ifrfbutg...DG25.gif?raw=1

    Slightly zoomed:
    https://www.dropbox.com/s/uv9ye2hf4s...Zoom.gif?raw=1
     
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    Quote Originally Posted by ph2ter View Post
    Here is my try of G25 Moderns Europe with Anthrogenica users:
    https://www.dropbox.com/s/35ifrfbutg...DG25.gif?raw=1

    Slightly zoomed:
    https://www.dropbox.com/s/uv9ye2hf4s...Zoom.gif?raw=1
    Cool! Is that with unscaled coordinates?
    YDNA - E-Y31991>PF4428>Y134104>Y168273 Domingos Rodrigues, b. circa 1690 Hidden Content , Portugal - Stonemason, miller.
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    [1] "distance%=1.6157"
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    Quote Originally Posted by Ruderico View Post
    Cool! Is that with unscaled coordinates?
    Scaled.
     
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