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Thread: British Samples from 1000 Genomes Project

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    British Samples from 1000 Genomes Project

    Does anybody know where these samples are exactly from?


    GreatBritain_HG00096
    GreatBritain_HG00097
    GreatBritain_HG00099
    GreatBritain_HG00100
    GreatBritain_HG00101
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  3. #2
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    The only available information is "England and Scotland"
    En North alom, de North venom
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    (Roman de Rou, Wace, 1160-1170)

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  5. #3
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    Quote Originally Posted by anglesqueville View Post
    The only available information is "England and Scotland"
    Is there any other dataset that I can reach for British Isles? (Irish, Scotthish, Welsh and etc.)
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    Quick answer, sure that some others will provide more.

    english:14 ind,Hellenthal et al 2014
    irish:7 ind,Hellenthal et al 2014
    scottish:12 ind,Hellenthal et al 2014
    welsh:8 ind,Hellenthal et al 2014
    orcadian:15 ind, HGDP

    Hellenthal: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4209567/

    These samples were used in several studies and are for example part of the large multi-continental sample collected by Busby for https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714572/ . This sample is still available (as a PLINK file):https://data.mendeley.com/datasets/ckz9mtgrjj/1 .

    edit: 523443 SNPs, far less than 1000g, of course. I hope you don't intend to use it for an imputation job...
    Last edited by anglesqueville; 08-13-2019 at 08:52 PM.
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

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    Quote Originally Posted by anglesqueville View Post
    Quick answer, sure that some others will provide more.

    english:14 ind,Hellenthal et al 2014
    irish:7 ind,Hellenthal et al 2014
    scottish:12 ind,Hellenthal et al 2014
    welsh:8 ind,Hellenthal et al 2014
    orcadian:15 ind, HGDP

    Hellenthal: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4209567/

    These samples were used in several studies and are for example part of the large multi-continental sample collected by Busby for https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4714572/ . This sample is still available (as a PLINK file):https://data.mendeley.com/datasets/ckz9mtgrjj/1 .

    edit: 523443 SNPs, far less than 1000g, of course. I hope you don't intend to use it for an imputation job...
    Thanks a lot, this dataset will be useful.

    No, I'll use them for an ADMIXTURE calculator we've been working on. The SNP levels should be enough.
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  10. #6
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    Btw, samples from Kent will be also appreciated.
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  12. #7
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    Quote Originally Posted by Leper View Post
    Thanks a lot, this dataset will be useful.

    No, I'll use them for an ADMIXTURE calculator we've been working on. The SNP levels should be enough.
    May I ask what sort of admix calculator you are attempting? World with Modern populations? Or something more Eurocentric?

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    Quote Originally Posted by jadegreg View Post
    May I ask what sort of admix calculator you are attempting? World with Modern populations? Or something more Eurocentric?
    World with modern populations. Ancient calc. will be seperate.
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    Quote Originally Posted by Leper View Post
    Btw, samples from Kent will be also appreciated.
    According to Schiffels' study (2016, "Iron Age and Anglo-Saxon genomes from East England reveal British migration history"), the British sample inside 1000genomes comes from Kent, Cornwall and Orkney. There is very likely somewhere a table with the location of each individual. I'll search.
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