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Thread: list of Y-SNPs from the 1240K capture

  1. #1
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    list of Y-SNPs from the 1240K capture

    Several papers use what they call a 1240K capture to target a limited number of SNPs. Is a list of the Y-SNPs captured by this technique available anywhere?

    I have found a paper from 2015 which briefly describes the process: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4918750/
    According to this paper, it targes 32,681 SNPs on chromosome Y. I am especially looking for which Subclades of R1b-U106 are covered by this method.
    Gedmatch DNA: M032736 Gedcom: 6613110.
    Gedmatch Genesis: WH4547538
    co-administrator: Y-DNA R-U106 Haplogroup Project

  2. #2
    Registered Users
    Posts
    791
    Sex
    Location
    Waterville, ME
    Ethnicity
    Great Migration Colonists
    Nationality
    American
    Y-DNA (P)
    R1b-U106 (S10415)
    mtDNA (M)
    J1c2g (FMS)
    Y-DNA (M)
    I1a-P109 (23andMe)
    mtDNA (P)
    T2b3 (23andMe)

    United States Gadsden England Scotland Ireland Wales
    I believe the following post from Waldemar may be a good indication of the Y-SNPs included in the 1240K capture
    https://anthrogenica.com/showthread....l=1#post467284
    https://drive.google.com/file/d/1f2Y...yUBPDY6Xu/view

    Looking at U106 SNPs I note the following SNPs are showing up in this report
    U106
    Z381
    Z18
    U198
    FGC396
    S12025

    The following SNPs are NOT showing up in this report (and presumably are not included in the 1240K capture)*
    A2150
    S19589
    FGC3861
    S18632
    Z301
    L48
    Z156


    *It may be that no-calls for the individual referenced (SZ20) may not show up in the report, so it is possible some of these SNPs may actually be in the 1240K capture.
    Last edited by Wing Genealogist; 09-19-2019 at 05:04 AM.
    Gedmatch DNA: M032736 Gedcom: 6613110.
    Gedmatch Genesis: WH4547538
    co-administrator: Y-DNA R-U106 Haplogroup Project

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     MitchellSince1893 (09-19-2019)

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