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Thread: PCA G25_scaled - Africans only (Users & Ancients/Modern Avgs)

  1. #361
    Registered Users
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    Rwanda Burundi
    Quote Originally Posted by Wangari View Post
    Another quick run with the source samples above plus the new Wang samples:

    Some brief observations:
    • I wonder why KenPN spikes in Kikuyu?
    • Surprisingly, the common denominator in all these groups is Dinka!
    • DRC Tutsi have the highest amounts of KEN_MoloCave_1500BP - perhaps this might point to their migration route?

     


    Target: Masai_Ayodo_103M
    Distance: 2.0356% / 0.02035593
    40.2 Dinka
    32.0 KEN_Pastoral_N
    9.4 COG_NgongoMbata_220BP
    7.2 KEN_Kakapel_300BP
    4.2 Levant_PPNC
    3.8 KEN_Kakapel_900BP
    1.6 Mbuti
    0.6 IRN_Ganj_Dareh_N
    0.6 ITA_Villabruna
    0.4 CMR_Shum_Laka_8000BP

    Target: Masai_Ayodo_101M
    Distance: 1.6919% / 0.01691867
    44.4 Dinka
    37.8 KEN_Pastoral_N
    8.2 KEN_Kakapel_300BP
    2.0 CMR_Shum_Laka_3000BP
    2.0 KEN_Kakapel_900BP
    1.8 COG_NgongoMbata_220BP
    1.8 IRN_Wezmeh_N
    1.0 Mbuti
    0.6 ITA_Villabruna
    0.4 Levant_Natufian

    Target: Masai
    Distance: 1.2127% / 0.01212736
    41.4 KEN_Pastoral_N
    39.0 Dinka
    14.0 KEN_Kakapel_900BP
    2.6 CMR_Shum_Laka_8000BP
    2.2 Anatolia_Barcin_N
    0.8 KEN_Kakapel_3900BP

    Target: Sengwer
    Distance: 1.7152% / 0.01715223
    50.2 Dinka
    13.6 KEN_LuKENHill_3500BP
    9.8 KEN_HyraxHill_2300BP
    8.6 KEN_Kakapel_900BP
    8.0 KEN_MoloCave_1500BP
    4.8 KEN_LSA
    4.6 KEN_Kakapel_3900BP
    0.2 ITA_Villabruna
    0.2 Mbuti

    Target: Luhya_Kenya
    Distance: 2.1789% / 0.02178883
    77.8 KEN_Kakapel_300BP
    18.4 COG_NgongoMbata_220BP
    3.8 Dinka

    Target: Luo:Ayodo_430C
    Distance: 2.4493% / 0.02449269
    63.2 KEN_Kakapel_300BP
    20.4 Dinka
    9.6 BWA_Taukome_1100BP
    6.6 COG_Kindoki_230BP
    0.2 CMR_Shum_Laka_3000BP

    Target: Luo:Ayodo_412C
    Distance: 2.2806% / 0.02280573
    60.4 KEN_Kakapel_300BP
    29.0 COG_NgongoMbata_220BP
    8.2 Dinka
    2.0 CMR_Shum_Laka_3000BP
    0.4 Mbuti

    Target: Hutu_scaled
    Distance: 1.1552% / 0.01155200
    36.0 KEN_Kakapel_300BP
    21.8 COG_NgongoMbata_220BP
    13.2 COG_Kindoki_230BP
    10.0 BWA_Taukome_1100BP
    8.6 Dinka
    5.6 Levant_Natufian
    3.2 CMR_Shum_Laka_3000BP
    0.8 Yoruba
    0.6 KEN_LuKENHill_3500BP
    0.2 Levant_PPNB

    Target: Kikuyu_Nyeri_4
    Distance: 1.6769% / 0.01676883
    24.0 COG_NgongoMbata_220BP
    19.0 KEN_MoloCave_1500BP
    14.8 Dinka
    12.0 KEN_Pastoral_N
    10.6 KEN_Kakapel_300BP
    9.8 COG_Kindoki_230BP
    5.0 Levant_PPNC
    2.4 BWA_Taukome_1100BP
    1.0 CMR_Shum_Laka_3000BP
    1.0 KEN_Kakapel_900BP
    0.4 KEN_HyraxHill_2300BP

    Target: Kikuyu_Nyeri_1
    Distance: 2.3739% / 0.02373863
    27.6 Dinka
    21.6 KEN_Kakapel_300BP
    21.6 KEN_Pastoral_N
    18.0 COG_NgongoMbata_220BP
    3.6 Levant_PPNB
    2.8 COG_Kindoki_230BP
    1.8 Yoruba
    1.6 Ju_hoan_North
    1.0 BWA_Taukome_1100BP
    0.4 Anatolia_Barcin_N

    Target: Kikuyu_Average
    Distance: 1.1729% / 0.01172852
    30.8 KEN_Pastoral_N
    20.4 KEN_Kakapel_300BP
    19.4 COG_NgongoMbata_220BP
    19.4 Dinka
    3.8 BWA_Taukome_1100BP
    2.8 COG_Kindoki_230BP
    1.8 Levant_PPNC
    1.0 Yoruba
    0.6 Ju_hoan_North

    Target: Tutsi_AB
    Distance: 1.7515% / 0.01751499
    39.4 KEN_Pastoral_N
    25.0 KEN_Kakapel_300BP
    24.0 Dinka
    3.8 Levant_Natufian
    2.8 KEN_Kakapel_900BP
    2.8 KEN_Nyarindi_3500BP
    0.8 ITA_Villabruna
    0.8 Ju_hoan_North
    0.6 COG_Kindoki_230BP

    Target: Tutsi_DRC_3
    Distance: 1.5332% / 0.01533247
    28.6 KEN_MoloCave_1500BP
    24.4 Dinka
    12.8 KEN_Pastoral_N
    12.0 KEN_Kakapel_300BP
    8.6 BWA_Taukome_1100BP
    6.6 Levant_Natufian
    3.4 MAR_EN
    2.0 KEN_Nyarindi_3500BP
    1.2 ITA_Villabruna
    0.4 Mbuti

    Target: Tutsi_DRC_2
    Distance: 1.4307% / 0.01430736
    37.6 KEN_MoloCave_1500BP
    22.0 Dinka
    10.0 KEN_Kakapel_300BP
    7.8 Yoruba
    6.4 KEN_HyraxHill_2300BP
    5.2 KEN_Pastoral_N
    4.8 BWA_Taukome_1100BP
    3.6 Levant_Natufian
    1.2 MAR_EN
    0.6 MAR_LN
    0.6 Mbuti
    0.2 ITA_Villabruna

    Target: Tutsi_DRC_1
    Distance: 1.5382% / 0.01538190
    35.0 Dinka
    22.4 KEN_Pastoral_N
    13.0 KEN_MoloCave_1500BP
    9.4 KEN_Kakapel_300BP
    8.0 BWA_Taukome_1100BP
    4.2 Levant_PPNC
    4.0 Levant_Natufian

    2.2 KEN_LuKENHill_3500BP
    1.2 MAR_EN
    0.4 Ju_hoan_North
    0.2 ITA_Villabruna

    Target: Hima_royal
    Distance: 1.6585% / 0.01658459
    42.8 Dinka
    13.4 KEN_Pastoral_N
    11.6 Levant_Natufian
    10.0 COG_NgongoMbata_220BP
    8.0 KEN_LuKENHill_3500BP
    7.8 KEN_MoloCave_1500BP
    3.0 Levant_PPNB
    1.8 Ju_hoan_North
    1.4 KEN_Kakapel_900BP
    0.2 Mbuti
    DRC tutsi prefer Molocave1500BP due to higher HG/Mota like ancestry it carries. Also, is this a bit overfitting, looks like a lot of similar individuals are being picked up splitting up some ancestral components.

  2. The Following 3 Users Say Thank You to mpatsibihugu89 For This Useful Post:

     Alfa (07-01-2020),  drobbah (07-01-2020),  pgbk87 (07-04-2020)

  3. #362
    Registered Users
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    Congo Kinshasa United States of America
    Quote Originally Posted by drobbah View Post
    Are the Tutsi/Hima royalty more Cushitic on average than the other Tutsis/related peoples?

    Edit: Somali runs with the new samples

     
    Target: Drobbah_scaled
    Distance: 1.2746% / 0.01274637
    26.4 KEN_Pastoral_N
    23.6 TZA_PN
    21.6 KEN_Pastoral_IA
    13.2 KEN_LuKENHill_3500BP
    8.6 KEN_HyraxHill_2300BP
    2.8 EGY_Hellenistic
    1.0 MAR_EN
    0.8 RUS_Saltovo-Mayaki_low_res
    0.6 KEN_Early_Pastoral_N
    0.4 BLZ_SakiTzul_7400BP
    0.4 RUS_Yana_MA
    0.4 VUT_2350BP
    0.2 TWN_Gongguan

    Target: Mother_scaled
    Distance: 1.6824% / 0.01682396
    41.8 TZA_PN
    30.2 KEN_HyraxHill_2300BP
    17.6 KEN_Pastoral_IA
    6.6 KEN_Pastoral_N_o
    2.8 TUR_Titris_Hoyuk_EBA
    0.8 CHN_Chuanyun_Historic
    0.2 IRN_Wezmeh_N

    Target: Father_scaled
    Distance: 1.5151% / 0.01515143
    47.4 KEN_Pastoral_N
    16.8 KEN_LuKENHill_3500BP
    16.4 TZA_PN
    13.2 KEN_Pastoral_IA
    2.2 KEN_MoloCave_1500BP
    2.0 MAR_EN
    1.0 PER_LaGalgada_4100BP
    0.6 IRN_Wezmeh_N
    0.4 KEN_HyraxHill_2300BP


    Target: Somali_Kenya
    Distance: 1.1110% / 0.01110981
    50.8 KEN_Pastoral_N
    26.2 KEN_Pastoral_IA
    14.2 TZA_PN
    5.0 Levant_Natufian
    2.2 COG_NgongoMbata_220BP
    0.8 IRN_Tepe_Abdul_Hosein_N
    0.4 KEN_Pastoral_N_o
    0.4 PAK_Saidu_Sharif_H_o

    Target: Somali
    Distance: 1.3745% / 0.01374451
    28.4 KEN_Pastoral_N
    24.4 TZA_PN
    23.2 KEN_Pastoral_IA
    12.8 KEN_HyraxHill_2300BP
    4.2 Levant_Natufian
    3.4 KEN_Pastoral_N_o
    1.2 IRN_Tepe_Abdul_Hosein_N
    1.0 EGY_Hellenistic
    0.6 MAR_EN
    0.6 PAK_Saidu_Sharif_H_o
    0.2 USA_Island_Chumash_SanMiguel
    I thought I could interject my opinion on this subject.
    With a very limited sample of Tutsis we have so far, there is country to country variations, with some overlap of course.
    Have a closer look at all these individuals from 4 different countries; namely; Congo,Rwanda, Burundi and Uganda.
    20F8E3B7-310D-4720-A32B-8F2F489E3FD5.jpeg
    Disclaimer: I’m not probably good at making PCA, just did it to see what It would look like.
    •Rwanda/Burundi is 1/2 Rwandan, 1/2 Burundian Tutsi.

    There isn’t anything that can help give an answer to the question u asked since the only member of any royal family is a Hima from UG. The rest would be speculation.
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

    I find this quite neat. If we assume Tutsis/Hutus are a product of Iron Age combo of all groups present then. This model is quite interesting to look at.
    3D34A5C4-5B9E-4EC1-A0A1-3B2A9D793C74.png

    After I rename them for convenience/fun sake
    Tutsi = myself.

    260E0657-CB9C-4E5F-8D92-14449D734FEA.png

    Source samples.
    CBAFFB90-EDCC-4AE3-8072-DA5804A86DFB.png
    * And btw, this is a time of states formation in the interlacustrine region which gave rise to kingdoms and empires that unified many different tribes under one rule.
    Last edited by Espoir; 07-01-2020 at 11:03 AM.

  4. The Following 3 Users Say Thank You to Espoir For This Useful Post:

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