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Thread: Admix studio v1.5 chr check

  1. #1
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    Admix studio v1.5 chr check

    I'm not sure what's going on here. I've just installed v1.5 , and am trying out the 'segments to analyse' part. I chose 23andme Scandinavian,1,chr7,45653,48040275

    I then used K47 as it has a Scando Germanic component .

    Result

    Component %
    East-Iberian 26.35%
    Celtic 19.07%
    Baltic 16.65%
    West-Med 12.5%
    Paleo-Balkan 10.28%
    West-Finnic 4.71%
    Scando-Germanic 3.44%
    Iranian 3.42%
    Andean 1.9%
    Central-Med 0.94%
    Uralic 0.63%
    Volgan 0.09%
    North-Sea_Germanic 0.01%
    South-African_HG 0.01%


    Mixed Mode:
    Elapsed Time: 12283 ms
    1 68.16% Spanish_mixed + 31.84% French_West @ 30.638
    2 75.98% Spanish_mixed + 24.02% Orcadian @ 30.865
    3 86.52% Spanish_mixed + 13.48% Saami @ 30.870
    4 50.20% French_West + 49.80% Spanish_mixed @ 30.933
    5 85.74% Spanish_mixed + 14.26% Estonian @ 30.969
    6 79.10% Spanish_mixed + 20.90% Icelandic @ 30.973
    7 84.57% Spanish_mixed + 15.43% Aleut @ 30.985
    8 78.71% Spanish_mixed + 21.29% Hungarian2 @ 31.057
    9 85.74% Spanish_mixed + 14.26% Aleut_Tlingit @ 31.091
    10 82.23% Spanish_mixed + 17.77% Czech @ 31.093
    11 87.30% Spanish_mixed + 12.70% Russian @ 31.126
    12 89.65% Spanish_mixed + 10.35% Eskimo2 @ 31.153
    13 87.70% Spanish_mixed + 12.30% Yukagir3 @ 31.176
    14 83.01% Spanish_mixed + 16.99% Croat @ 31.184
    15 90.43% Spanish_mixed + 9.57% Pathan @ 31.251
    16 90.04% Spanish_mixed + 9.96% Kirghiz_Bishkek @ 31.253
    17 83.40% Spanish_mixed + 16.60% Bulgarian @ 31.266
    18 91.21% Spanish_mixed + 8.79% Tubalar @ 31.266
    19 90.82% Spanish_mixed + 9.18% Burusho @ 31.274
    20 89.26% Spanish_mixed + 10.74% UKR_Lvov @ 31.280
    21 89.65% Spanish_mixed + 10.35% Uygur @ 31.281
    22 91.99% Spanish_mixed + 8.01% Kalash @ 31.308
    23 90.43% Spanish_mixed + 9.57% Hazara @ 31.311
    24 92.38% Spanish_mixed + 7.62% GujaratiA @ 31.317
    25 92.38% Spanish_mixed + 7.62% Sindhi @ 31.318
    26 86.91% Spanish_mixed + 13.09% Hungarian1 @ 31.330
    27 90.43% Spanish_mixed + 9.57% Uzbek @ 31.333
    28 92.77% Spanish_mixed + 7.23% Brahui @ 31.341
    29 92.77% Spanish_mixed + 7.23% Even @ 31.341
    30 90.43% Spanish_mixed + 9.57% Turkmen_UZB @ 31.352
    31 93.16% Spanish_mixed + 6.84% Balochi @ 31.357
    32 91.60% Spanish_mixed + 8.40% Nogay @ 31.367
    33 80.66% Spanish_mixed + 19.34% French @ 31.369
    34 93.55% Spanish_mixed + 6.45% Kalmyk @ 31.372
    35 93.55% Spanish_mixed + 6.45% Makrani @ 31.372
    36 93.55% Spanish_mixed + 6.45% Iranian_Bandari @ 31.390
    37 94.73% Spanish_mixed + 5.27% Tu @ 31.391
    38 88.48% Spanish_mixed + 11.52% Greek_Thessaloniki @ 31.398
    39 88.87% Spanish_mixed + 11.13% Romania_Gorj @ 31.416
    40 96.29% Spanish_mixed + 3.71% Yukagir @ 31.429

    Least-squares method.

    Using 1 populations approximation
    1 100% Spanish_mixed @ 31.504
    2 100% French @ 33.682
    3 100% French_West @ 34.457
    4 100% French_East @ 34.628
    5 100% French_Northwest @ 35.315
    6 100% Italian_North @ 35.629
    7 100% Romanian_Apuseni @ 36.555
    8 100% Orcadian @ 36.745
    9 100% Romania_Gorj @ 36.752
    10 100% Hungarian2 @ 36.791
    New populations: 42

    Using 2 populations approximation
    1 50% French_West + 50% Spanish_mixed @ 30.926
    2 50% Spanish_mixed + 50% Spanish_mixed @ 31.504
    3 50% Orcadian + 50% Spanish_mixed @ 31.607
    4 50% French + 50% Spanish_mixed @ 31.716
    5 50% Hungarian2 + 50% Spanish_mixed @ 31.884
    6 50% Icelandic + 50% Spanish_mixed @ 32.004
    7 50% French_East + 50% Spanish_mixed @ 32.096
    8 50% Bulgarian + 50% Spanish_mixed @ 32.232
    9 50% French_Northwest + 50% Spanish_mixed @ 32.264
    10 50% Croat + 50% Spanish_mixed @ 32.358

    Using 3 populations approximation
    1 33% French_West + 33% Spanish_mixed + 33% Spanish_mixed @ 30.640
    2 33% Orcadian + 33% Spanish_mixed + 33% Spanish_mixed @ 30.961
    3 33% French_West + 33% Greek_Thessaloniki + 33% Spanish_mixed @ 31.111
    4 33% Icelandic + 33% Spanish_mixed + 33% Spanish_mixed @ 31.165
    5 33% Hungarian2 + 33% Spanish_mixed + 33% Spanish_mixed @ 31.206
    6 33% Bulgarian + 33% French_West + 33% Spanish_mixed @ 31.277
    7 33% French_West + 33% Malta + 33% Spanish_mixed @ 31.380
    8 33% Greek_Thessaloniki + 33% Orcadian + 33% Spanish_mixed @ 31.399
    9 33% Czech + 33% Spanish_mixed + 33% Spanish_mixed @ 31.405
    10 33% French + 33% Spanish_mixed + 33% Spanish_mixed @ 31.442

    Using 4 populations approximation
    1 25% French_West + 25% Spanish_mixed + 25% Spanish_mixed + 25% Spanish_mixed @ 30.677
    2 25% French_West + 25% Greek_Thessaloniki + 25% Spanish_mixed + 25% Spanish_mixed @ 30.828
    3 25% Bulgarian + 25% French_West + 25% Spanish_mixed + 25% Spanish_mixed @ 30.855
    4 25% Orcadian + 25% Spanish_mixed + 25% Spanish_mixed + 25% Spanish_mixed @ 30.866
    5 25% French_West + 25% French_West + 25% Spanish_mixed + 25% Spanish_mixed @ 30.926
    6 25% Aleut + 25% French_West + 25% Spanish_mixed + 25% Spanish_mixed @ 30.957
    7 25% Icelandic + 25% Spanish_mixed + 25% Spanish_mixed + 25% Spanish_mixed @ 30.994
    8 25% Greek_Thessaloniki + 25% Orcadian + 25% Spanish_mixed + 25% Spanish_mixed @ 31.000
    9 25% Croat + 25% French_West + 25% Spanish_mixed + 25% Spanish_mixed @ 31.026
    10 25% Bulgarian + 25% Orcadian + 25% Spanish_mixed + 25% Spanish_mixed @ 31.043

    Now tried
    British & Irish,1,chr1,1005806,249210707

    Component %
    Celtic 26.22%
    Scando-Germanic 18.91%
    East-Euro 14.03%
    North-Sea_Germanic 10.75%
    West-Med 8.01%
    Baltic 5.27%
    Central-Med 4.99%
    Paleo-Balkan 2.73%
    Iranian 2.44%
    West-Finnic 2.4%
    Indo-Chinese 1.35%
    Amazonian 0.94%
    North-Iberian 0.83%
    East-African_HG 0.63%
    Volgan 0.35%
    East-Iberian 0.06%
    Arabic 0.04%
    Pamirian 0.03%

    Mixed Mode:
    Elapsed Time: 10816 ms
    1 93.95% French_West + 6.05% UKR_Lvov @ 14.138
    2 92.38% French_West + 7.62% Czech @ 14.155
    3 94.34% French_West + 5.66% Hungarian2 @ 14.218
    4 95.51% French_West + 4.49% Croat @ 14.218
    5 96.68% French_West + 3.32% Russian @ 14.222
    6 97.07% French_West + 2.93% Estonian @ 14.229
    7 95.51% French_West + 4.49% Hungarian1 @ 14.231
    8 97.07% French_West + 2.93% Bulgarian @ 14.237
    9 91.60% French_West + 8.40% French_West @ 14.259
    10 99.80% French_West + 0.20% Icelandic @ 14.260
    11 99.80% French_West + 0.20% Aleut_Tlingit @ 14.260
    12 99.80% French_West + 0.20% Eskimo2 @ 14.260
    13 99.80% French_West + 0.20% Orcadian @ 14.260
    14 99.80% French_West + 0.20% Yukagir3 @ 14.260
    15 99.80% French_West + 0.20% Romania_Gorj @ 14.261
    16 99.80% French_West + 0.20% Aleut @ 14.261
    17 99.80% French_West + 0.20% Romanian_Apuseni @ 14.262
    18 99.80% French_West + 0.20% French_East @ 14.263
    19 99.80% French_West + 0.20% Greek_Thessaloniki @ 14.264
    20 99.80% French_West + 0.20% Even @ 14.265
    21 99.80% French_West + 0.20% French @ 14.266
    22 99.80% French_West + 0.20% French_Northwest @ 14.266
    23 99.80% French_West + 0.20% TR_Istanbul @ 14.267
    24 99.80% French_West + 0.20% Tubalar @ 14.268
    25 99.80% French_West + 0.20% Sicilian_Trapani @ 14.268
    26 99.80% French_West + 0.20% Tu @ 14.268
    27 99.80% French_West + 0.20% Italian_North @ 14.268
    28 99.80% French_West + 0.20% IraqiJew @ 14.268
    29 99.80% French_West + 0.20% Yukagir @ 14.268
    30 99.80% French_West + 0.20% GujaratiA @ 14.268
    31 99.80% French_West + 0.20% IT_South @ 14.268
    32 99.80% French_West + 0.20% Sephardi_TR @ 14.268
    33 99.80% French_West + 0.20% Saami @ 14.268
    34 99.80% French_West + 0.20% IranianJew @ 14.268
    35 99.80% French_West + 0.20% BedouinA @ 14.268
    36 99.80% French_West + 0.20% Malta @ 14.268
    37 99.80% French_West + 0.20% Egypt @ 14.269
    38 99.80% French_West + 0.20% Greek @ 14.269
    39 99.80% French_West + 0.20% Lebanese_Muslim @ 14.269
    40 99.80% French_West + 0.20% Uzbek @ 14.269

    Least-squares method.

    Using 1 populations approximation
    1 100% French_West @ 14.259
    2 100% Orcadian @ 15.229
    3 100% Icelandic @ 16.929
    4 100% French_East @ 18.979
    5 100% French @ 19.884
    6 100% French_Northwest @ 19.964
    7 100% Hungarian2 @ 22.862
    8 100% Hungarian1 @ 23.482
    9 100% Czech @ 25.098
    10 100% Croat @ 27.840
    New populations: 36

    Using 2 populations approximation
    1 50% French_West + 50% French_West @ 14.259
    2 50% French_West + 50% Orcadian @ 14.593
    3 50% French_West + 50% Icelandic @ 15.015
    4 50% Orcadian + 50% Orcadian @ 15.229
    5 50% Icelandic + 50% Orcadian @ 15.612
    6 50% French_East + 50% Orcadian @ 15.919
    7 50% French_East + 50% French_West @ 15.983
    8 50% Hungarian2 + 50% Orcadian @ 16.445
    9 50% French_East + 50% Icelandic @ 16.500
    10 50% French_West + 50% Hungarian2 @ 16.516

    Using 3 populations approximation
    1 33% French_West + 33% French_West + 33% French_West @ 14.259
    2 33% French_West + 33% French_West + 33% Orcadian @ 14.447
    3 33% French_West + 33% French_West + 33% Icelandic @ 14.620
    4 33% French_West + 33% Orcadian + 33% Orcadian @ 14.773
    5 33% French_West + 33% Icelandic + 33% Orcadian @ 14.932
    6 33% French_West + 33% French_West + 33% Hungarian2 @ 15.152
    7 33% French_West + 33% Hungarian2 + 33% Orcadian @ 15.154
    8 33% Orcadian + 33% Orcadian + 33% Orcadian @ 15.229
    9 33% French_East + 33% French_West + 33% French_West @ 15.239
    10 33% French_East + 33% French_West + 33% Orcadian @ 15.245

    Using 4 populations approximation
    1 25% French_West + 25% French_West + 25% French_West + 25% French_West @ 14.259
    2 25% French_West + 25% French_West + 25% French_West + 25% Orcadian @ 14.387
    3 25% French_West + 25% French_West + 25% French_West + 25% Icelandic @ 14.475
    4 25% French_West + 25% French_West + 25% Orcadian + 25% Orcadian @ 14.593
    5 25% French_West + 25% French_West + 25% Icelandic + 25% Orcadian @ 14.674
    6 25% Czech + 25% French_West + 25% French_West + 25% French_West @ 14.679
    7 25% Czech + 25% French_West + 25% French_West + 25% Orcadian @ 14.680
    8 25% French_West + 25% French_West + 25% French_West + 25% Hungarian2 @ 14.680
    9 25% French_West + 25% French_West + 25% Hungarian2 + 25% Orcadian @ 14.702
    10 25% Czech + 25% French_West + 25% Orcadian + 25% Orcadian @ 14.760
    Mixed Mode:
    Elapsed Time: 10816 ms
    1 93.95% French_West + 6.05% UKR_Lvov @ 14.138
    2 92.38% French_West + 7.62% Czech @ 14.155
    3 94.34% French_West + 5.66% Hungarian2 @ 14.218
    4 95.51% French_West + 4.49% Croat @ 14.218
    5 96.68% French_West + 3.32% Russian @ 14.222
    6 97.07% French_West + 2.93% Estonian @ 14.229
    7 95.51% French_West + 4.49% Hungarian1 @ 14.231
    8 97.07% French_West + 2.93% Bulgarian @ 14.237
    9 91.60% French_West + 8.40% French_West @ 14.259
    10 99.80% French_West + 0.20% Icelandic @ 14.260
    11 99.80% French_West + 0.20% Aleut_Tlingit @ 14.260
    12 99.80% French_West + 0.20% Eskimo2 @ 14.260
    13 99.80% French_West + 0.20% Orcadian @ 14.260
    14 99.80% French_West + 0.20% Yukagir3 @ 14.260
    15 99.80% French_West + 0.20% Romania_Gorj @ 14.261
    16 99.80% French_West + 0.20% Aleut @ 14.261
    17 99.80% French_West + 0.20% Romanian_Apuseni @ 14.262
    18 99.80% French_West + 0.20% French_East @ 14.263
    19 99.80% French_West + 0.20% Greek_Thessaloniki @ 14.264
    20 99.80% French_West + 0.20% Even @ 14.265
    21 99.80% French_West + 0.20% French @ 14.266
    22 99.80% French_West + 0.20% French_Northwest @ 14.266
    23 99.80% French_West + 0.20% TR_Istanbul @ 14.267
    24 99.80% French_West + 0.20% Tubalar @ 14.268
    25 99.80% French_West + 0.20% Sicilian_Trapani @ 14.268
    26 99.80% French_West + 0.20% Tu @ 14.268
    27 99.80% French_West + 0.20% Italian_North @ 14.268
    28 99.80% French_West + 0.20% IraqiJew @ 14.268
    29 99.80% French_West + 0.20% Yukagir @ 14.268
    30 99.80% French_West + 0.20% GujaratiA @ 14.268
    31 99.80% French_West + 0.20% IT_South @ 14.268
    32 99.80% French_West + 0.20% Sephardi_TR @ 14.268
    33 99.80% French_West + 0.20% Saami @ 14.268
    34 99.80% French_West + 0.20% IranianJew @ 14.268
    35 99.80% French_West + 0.20% BedouinA @ 14.268
    36 99.80% French_West + 0.20% Malta @ 14.268
    37 99.80% French_West + 0.20% Egypt @ 14.269
    38 99.80% French_West + 0.20% Greek @ 14.269
    39 99.80% French_West + 0.20% Lebanese_Muslim @ 14.269
    40 99.80% French_West + 0.20% Uzbek @ 14.269

    Least-squares method.

    Using 1 populations approximation
    1 100% French_West @ 14.259
    2 100% Orcadian @ 15.229
    3 100% Icelandic @ 16.929
    4 100% French_East @ 18.979
    5 100% French @ 19.884
    6 100% French_Northwest @ 19.964
    7 100% Hungarian2 @ 22.862
    8 100% Hungarian1 @ 23.482
    9 100% Czech @ 25.098
    10 100% Croat @ 27.840
    New populations: 36

    Using 2 populations approximation
    1 50% French_West + 50% French_West @ 14.259
    2 50% French_West + 50% Orcadian @ 14.593
    3 50% French_West + 50% Icelandic @ 15.015
    4 50% Orcadian + 50% Orcadian @ 15.229
    5 50% Icelandic + 50% Orcadian @ 15.612
    6 50% French_East + 50% Orcadian @ 15.919
    7 50% French_East + 50% French_West @ 15.983
    8 50% Hungarian2 + 50% Orcadian @ 16.445
    9 50% French_East + 50% Icelandic @ 16.500
    10 50% French_West + 50% Hungarian2 @ 16.516

    Using 3 populations approximation
    1 33% French_West + 33% French_West + 33% French_West @ 14.259
    2 33% French_West + 33% French_West + 33% Orcadian @ 14.447
    3 33% French_West + 33% French_West + 33% Icelandic @ 14.620
    4 33% French_West + 33% Orcadian + 33% Orcadian @ 14.773
    5 33% French_West + 33% Icelandic + 33% Orcadian @ 14.932
    6 33% French_West + 33% French_West + 33% Hungarian2 @ 15.152
    7 33% French_West + 33% Hungarian2 + 33% Orcadian @ 15.154
    8 33% Orcadian + 33% Orcadian + 33% Orcadian @ 15.229
    9 33% French_East + 33% French_West + 33% French_West @ 15.239
    10 33% French_East + 33% French_West + 33% Orcadian @ 15.245

    Using 4 populations approximation
    1 25% French_West + 25% French_West + 25% French_West + 25% French_West @ 14.259
    2 25% French_West + 25% French_West + 25% French_West + 25% Orcadian @ 14.387
    3 25% French_West + 25% French_West + 25% French_West + 25% Icelandic @ 14.475
    4 25% French_West + 25% French_West + 25% Orcadian + 25% Orcadian @ 14.593
    5 25% French_West + 25% French_West + 25% Icelandic + 25% Orcadian @ 14.674
    6 25% Czech + 25% French_West + 25% French_West + 25% French_West @ 14.679
    7 25% Czech + 25% French_West + 25% French_West + 25% Orcadian @ 14.680
    8 25% French_West + 25% French_West + 25% French_West + 25% Hungarian2 @ 14.680
    9 25% French_West + 25% French_West + 25% Hungarian2 + 25% Orcadian @ 14.702
    10 25% Czech + 25% French_West + 25% Orcadian + 25% Orcadian @ 14.760


    Either I'm doing something wrong(which is very possible) or this is genuinely strange.
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  2. #2
    Registered Users
    Posts
    356
    Sex
    Ethnicity
    Jewish
    Nationality
    South African
    Y-DNA (P)
    J-L70
    mtDNA (M)
    HV1b2
    Y-DNA (M)
    J-L816

    Israel Jerusalem Star of David Israel South Africa
    For some reason, I can't download it off the website?

    EDIT: Nevermind

  3. #3
    Gold Class Member
    Posts
    4,515
    Sex
    Location
    Calne,England
    Ethnicity
    British and Irish
    Nationality
    Great Britain
    Y-DNA (P)
    E-Y45878
    mtDNA (M)
    H67

    United Kingdom Scotland England Ireland
    Trying Eurogenes K13 and K15


    K13

    Least-squares method.

    Using 1 populations approximation
    1 100% Southwest_English @ 11.602
    2 100% Southeast_English @ 12.462
    3 100% Orcadian @ 13.052
    4 100% Hinxton5 @ 13.399
    5 100% BR1 @ 13.411
    6 100% South_Dutch @ 13.661
    7 100% Irish @ 13.893
    8 100% West_Scottish @ 14.030
    9 100% Icelandic @ 14.743
    10 100% North_Dutch @ 14.938
    New populations: 51


    K15

    Using 1 populations approximation
    1 100% French_Basque @ 34.920
    2 100% Southwest_French @ 39.983
    3 100% Spanish_Aragon @ 41.182
    4 100% BR1 @ 41.334
    5 100% Spanish_Valencia @ 41.997
    6 100% Spanish_Castilla_La_Mancha @ 42.545
    7 100% Spanish_Andalucia @ 42.942
    8 100% Spanish_Cantabria @ 43.349
    9 100% Spanish_Castilla_Y_Leon @ 44.169
    10 100% Loschbour @ 44.933
    New populations: 61
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  4. #4
    Gold Class Member
    Posts
    4,515
    Sex
    Location
    Calne,England
    Ethnicity
    British and Irish
    Nationality
    Great Britain
    Y-DNA (P)
    E-Y45878
    mtDNA (M)
    H67

    United Kingdom Scotland England Ireland
    Michal K25

    Least-squares method.

    Using 1 populations approximation
    1 100% French @ 12.786
    2 100% Spanish @ 13.451
    3 100% Canary_Islander @ 16.886
    4 100% English @ 18.401
    5 100% Italian_North @ 20.136
    6 100% Orcadian @ 21.457
    7 100% Scottish @ 21.463
    8 100% Spanish_North @ 23.698
    9 100% Romanian @ 24.824
    10 100% Bulgarian @ 25.962
    New populations: 43

    Lukasz K15


    Using 1 populations approximation
    1 100% French_central @ 9.315
    2 100% French_East @ 9.425
    3 100% French_Northwest @ 9.603
    4 100% English_Kent_GBR @ 11.918
    5 100% French_West @ 12.608
    6 100% CEU @ 13.022
    7 100% Irish @ 14.346
    8 100% Austria @ 14.481
    9 100% english @ 14.963
    10 100% Orcadian @ 15.031
    New populations: 111


    Dodecad world 9

    Least-squares method.

    Using 1 populations approximation
    1 100% British_Isles_D @ 12.822
    2 100% Norwegian_D @ 12.913
    3 100% Orkney_1KG @ 12.940
    4 100% French_Basque @ 13.371
    5 100% Pais_Vasco_1KG @ 13.374
    6 100% Orcadian @ 13.391
    7 100% Cornwall_1KG @ 13.501
    8 100% British_D @ 13.582
    9 100% Kent_1KG @ 13.635
    10 100% Irish_D @ 13.888
    New populations: 55


    K36 ancient


    Least-squares method.

    Using 1 populations approximation
    1 100% Visigoth_Iberian_I12034 @ 25.561
    2 100% BA_Hungary_RISE254 @ 31.215
    3 100% DA111_Hallstatt @ 31.616
    4 100% Bell_Beaker_Germany_I0806 @ 33.361
    5 100% IA_Britainr_York_6DRIF22 @ 33.654
    6 100% IA_Britain_York_6DRIF23 @ 33.825
    7 100% Bell_Beaker_Germany_I0113 @ 34.580
    8 100% BA_Portugal_Vale_Ouro @ 34.917
    9 100% BA_Portugal_MonteGato_104 @ 34.931
    10 100% MBA_ATP9_Iberia @ 35.084
    New populations: 86

    pca for K36 ancient chr 7

    Admix studio chr 7 ancient K36 PCA.png
    Last edited by firemonkey; 11-03-2019 at 11:24 AM.
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  5. #5
    Gold Class Member
    Posts
    4,515
    Sex
    Location
    Calne,England
    Ethnicity
    British and Irish
    Nationality
    Great Britain
    Y-DNA (P)
    E-Y45878
    mtDNA (M)
    H67

    United Kingdom Scotland England Ireland
    EG13 and 15 and Lukasz K47 PCAs


    Attachment 34355
    Attachment 34357
    Attachment 34356
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