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Thread: Haplogroup R30a and subgroups

  1. #1
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    Haplogroup R30a and subgroups

    Haplogroup R30a is quite a rare haplogroup which possibly make up less than 1% of population in indian sub continent
    R30a is defined by the following mutations -G2056A,G3316A,T4232C,T5442C,G6764A,A9156G,A9242G,C 11047A,T12714C,T15055G .

    It could be divided into three distinct subgroups(i have used the published full sequences and 3 different geno 2.0 results including mine)

    R30a1- A4225G
    R30a1a-T16126C,A16181G,T16209C
    This subgroup is easily identifiable with the HVR1 itself and has its presence from punjab to kerala .
    R30a1b-T4047C,A13933G,C16256T
    R30a2-C9869G,T13161C,A13773G,T16172C,C16278T
    This is my subclade .Though geno 2.0 doesnt test at locations 9869 and 13773 i am positive for other three locations .There is an almost similar result from a kerala nair individual too . Also have presence from iran to srilanka
    R30a3-G10688A
    Could be a possible subgroup .need to see more results to ascertain .

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  3. #2
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    My Geno 2.0 mtdna results
    SNP,Chr,Allele1,Allele2
    195,Mt,A,A
    247,Mt,C,C
    769,Mt,C,C
    825,Mt,A,A
    1018,Mt,C,C
    2395,Mt,T,T
    2758,Mt,C,C
    2885,Mt,T,T
    3316,Mt,A,A
    3594,Mt,G,G
    4104,Mt,A,A
    4232,Mt,C,C
    4312,Mt,C,C
    5442,Mt,C,C
    7256,Mt,C,C
    7521,Mt,G,G
    8468,Mt,G,G
    8584,Mt,A,A
    8655,Mt,C,C
    8701,Mt,A,A
    9156,Mt,G,G
    9540,Mt,T,T
    10398,Mt,A,A
    10664,Mt,G,G
    10688,Mt,C,C
    10810,Mt,A,A
    10873,Mt,A,A
    10915,Mt,A,A
    11047,Mt,T,T
    11914,Mt,C,C
    12705,Mt,G,G
    12714,Mt,G,G
    13105,Mt,T,T
    13161,Mt,G,G
    13276,Mt,A,A
    13506,Mt,C,C
    13650,Mt,G,G
    15055,Mt,G,G
    16129,Mt,G,G
    16172,Mt,G,G
    16230,Mt,A,A
    16311,Mt,A,A

  4. #3
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    The updated Geno 2.0 now gives my mtdna as
    R30a1a

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  6. #4
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    Location
    Germany
    Ethnicity
    Kerala Nair
    Nationality
    Indian
    Y-DNA
    R2a* > PF6109/P267
    mtDNA
    R30a1

    Afghanistan Pakistan India Iran Sri Lanka Finland
    Hello BMG,

    I also have R30a as mitochondrial DNA haplogroup (from 23andme).
    On a detailed SNP check with "https://dna.jameslick.com", i got the following results.

    Best mtDNA Haplogroup Matches:

    1) R30a1c
    Matches(17): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 13161C 14766T 16278T
    Flips(1): 11047T
    Extras(1): 14364A (16519C)
    No-Calls(3): (152C) 9242G 9869G 16172C
    Untested(7): 2056 6764 9142 9156 13773 15055 15326

    2) R30a1
    Matches(15): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 14766T
    Flips(1): 11047T
    Extras(3): 13161C 14364A 16278T (16519C)
    No-Calls(1): (152C) 9242G
    Untested(5): 2056 6764 9156 15055 15326

    3) R30a1a
    Matches(15): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 14766T
    Mismatches(1): 10688G
    Flips(1): 11047T
    Extras(3): 13161C 14364A 16278T (16519C)
    No-Calls(1): (152C) 9242G
    Untested(5): 2056 6764 9156 15055 15326

    I persume, I belong to a new subclade of R30a1.

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    Quote Originally Posted by volk_zargos View Post
    Hello BMG,

    I also have R30a as mitochondrial DNA haplogroup (from 23andme).
    On a detailed SNP check with "https://dna.jameslick.com", i got the following results.

    Best mtDNA Haplogroup Matches:

    1) R30a1c
    Matches(17): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 13161C 14766T 16278T
    Flips(1): 11047T
    Extras(1): 14364A (16519C)
    No-Calls(3): (152C) 9242G 9869G 16172C
    Untested(7): 2056 6764 9142 9156 13773 15055 15326

    2) R30a1
    Matches(15): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 14766T
    Flips(1): 11047T
    Extras(3): 13161C 14364A 16278T (16519C)
    No-Calls(1): (152C) 9242G
    Untested(5): 2056 6764 9156 15055 15326

    3) R30a1a
    Matches(15): 73G 263G 750G 1438G 2706G 3316A 4232C 4769G 5442C 7028T 8584A 8860G 11719A 12714C 14766T
    Mismatches(1): 10688G
    Flips(1): 11047T
    Extras(3): 13161C 14364A 16278T (16519C)
    No-Calls(1): (152C) 9242G
    Untested(5): 2056 6764 9156 15055 15326

    I persume, I belong to a new subclade of R30a1.
    You are in the same subclade as mine. . I will lookup the new available samples and update here shortly.

    Edit :As per present haplotree I am actually R30a1c .You also belong to R30a1c.It is just that 23andme do not test. Mtdna fully so you are not showing up as a perfect match .
    Last edited by BMG; 11-26-2017 at 11:36 AM.

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  10. #6
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    Quote Originally Posted by BMG View Post
    Haplogroup R30a is quite a rare haplogroup which possibly make up less than 1% of population in indian sub continent
    R30a is defined by the following mutations -G2056A,G3316A,T4232C,T5442C,G6764A,A9156G,A9242G,C 11047A,T12714C,T15055G .

    It could be divided into three distinct subgroups(i have used the published full sequences and 3 different geno 2.0 results including mine)

    R30a1- A4225G
    R30a1a-T16126C,A16181G,T16209C
    This subgroup is easily identifiable with the HVR1 itself and has its presence from punjab to kerala .
    R30a1b-T4047C,A13933G,C16256T
    R30a2-C9869G,T13161C,A13773G,T16172C,C16278T
    This is my subclade .Though geno 2.0 doesnt test at locations 9869 and 13773 i am positive for other three locations .There is an almost similar result from a kerala nair individual too . Also have presence from iran to srilanka
    R30a3-G10688A
    Could be a possible subgroup .need to see more results to ascertain .
    R30a3 here is now R30a1a
    R30a2 here is now R30a1c
    R30a1 is R30a1b
    Last edited by BMG; 11-26-2017 at 11:37 AM.

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