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Thread: DA125 Steppe Genome

  1. #1
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    Post DA125 Steppe Genome

    I am only person matching Both the lactose persistence genes that this DA125, Kangju, 150-300 AD genome matches in the 1000 genomes DB

    rs4988243 2 136607703 Found in Korea, ITU, BEB, GIH, qatar, MiddleEast, finn, jewish, amerind/latinos (ITU=34%, GIH=32.8%)
    rs2236783 2 136594158 Found in Europe and among Amerind/Latinos (ITU=11.27% GIH=12.25%)


    DA125, Kangju, 150-300 AD
    YDNA=https://yfull.com/tree/T-Y13279/ Found in IRAQ

    EuroGenes V2
    Kit Z043955

    Admix Results (sorted):

    # Population Percent
    1 North_Sea 36.02
    2 Atlantic 19.73
    3 Eastern_Euro 17.99
    4 West_Asian 13.64
    5 Baltic 5.05
    6 South_Asian 4.85
    7 Sub-Saharan 2.72

    Single Population Sharing:

    # Population (source) Distance
    1 Danish 15.8
    2 North_Swedish 15.82
    3 Norwegian 15.98
    4 North_German 16.13
    5 Swedish 16.48
    6 North_Dutch 16.62
    7 West_Norwegian 16.64
    8 Orcadian 17
    9 West_German 17.57
    10 West_Scottish 17.63
    11 Southeast_English 18.16
    12 Irish 18.17
    13 South_Dutch 18.7
    14 Southwest_English 18.82
    15 East_German 19.61
    16 Southwest_Finnish 19.7
    17 Finnish 20.89
    18 Hungarian 21.9
    19 French 22.3
    20 Austrian 22.36

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 71.6% West_Norwegian + 28.4% Tabassaran @ 9.54
    2 73.3% Norwegian + 26.7% Tabassaran @ 9.99
    3 74.5% West_Norwegian + 25.5% Afghan_Pashtun @ 10.21
    4 73.9% West_Norwegian + 26.1% Lezgin @ 10.27
    5 77.2% West_Norwegian + 22.8% Kalash @ 10.32
    6 71.7% Orcadian + 28.3% Tabassaran @ 10.39
    7 74.3% Danish + 25.7% Tabassaran @ 10.51
    8 75.8% Norwegian + 24.2% Lezgin @ 10.73
    9 74.5% North_Swedish + 25.5% Tabassaran @ 10.74
    10 75.4% West_Norwegian + 24.6% Chechen @ 10.77
    11 72.8% West_Norwegian + 27.2% Tadjik @ 10.81
    12 73.2% Swedish + 26.8% Tabassaran @ 10.84
    13 78.1% West_Norwegian + 21.9% Balochi @ 10.84
    14 76.6% Norwegian + 23.4% Afghan_Pashtun @ 10.91
    15 78.7% West_Norwegian + 21.3% Brahui @ 10.95
    16 79.2% Norwegian + 20.8% Kalash @ 11.02
    17 78.9% West_Norwegian + 21.1% Burusho @ 11.06
    18 71.2% West_Scottish + 28.8% Tabassaran @ 11.08
    19 73.3% North_Dutch + 26.7% Tabassaran @ 11.12
    20 77.2% Norwegian + 22.8% Chechen @ 11.16

    Eurogenes EUtest V2 K15 4-Ancestors Oracle
    This program is based on 4-Ancestors Oracle Version 0.96 by Alexandr Burnashev.
    Questions about results should be sent to him at: [email protected]
    Original concept proposed by Sergey Kozlov.
    Many thanks to Alexandr for helping us get this web version developed.

    Admix Results (sorted):

    # Population Percent
    1 North_Sea 36.02
    2 Atlantic 19.73
    3 Eastern_Euro 17.99
    4 West_Asian 13.64
    5 Baltic 5.05
    6 South_Asian 4.85
    7 Sub-Saharan 2.72


    Finished reading population data. 207 populations found.
    15 components mode.

    --------------------------------

    Least-squares method.

    Using 1 population approximation:
    1 North_Swedish @ 17.950872
    2 Danish @ 18.116697
    3 Norwegian @ 18.244684
    4 North_German @ 18.456060
    5 Swedish @ 18.860775
    6 North_Dutch @ 19.032530
    7 West_Norwegian @ 19.070400
    8 Orcadian @ 19.586597
    9 West_German @ 20.005934
    10 West_Scottish @ 20.288305
    11 Southeast_English @ 20.829548
    12 Irish @ 20.903996
    13 South_Dutch @ 21.331760
    14 Southwest_English @ 21.496536
    15 East_German @ 22.294331
    16 Southwest_Finnish @ 22.356117
    17 Finnish @ 23.571325
    18 Hungarian @ 25.042412
    19 French @ 25.409586
    20 Austrian @ 25.697174

    Using 2 populations approximation:
    1 50% Tabassaran +50% West_Norwegian @ 16.253195


    Using 3 populations approximation:
    1 50% North_Swedish +25% Orcadian +25% Tabassaran @ 10.886559


    Using 4 populations approximation:
    ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++++++++++++++
    1 North_Swedish + Orcadian + Tabassaran + West_Norwegian @ 10.619828
    2 North_Swedish + Tabassaran + West_Norwegian + West_Norwegian @ 10.710039
    3 Tabassaran + West_Norwegian + West_Norwegian + West_Norwegian @ 10.799469
    4 North_Swedish + Norwegian + Orcadian + Tabassaran @ 10.844185
    5 North_Swedish + Orcadian + Orcadian + Tabassaran @ 10.864993
    6 Orcadian + Tabassaran + West_Norwegian + West_Norwegian @ 10.871899
    7 Norwegian + Tabassaran + West_Norwegian + West_Norwegian @ 10.873715
    8 Danish + Tabassaran + West_Norwegian + West_Norwegian @ 10.885016
    9 North_Swedish + North_Swedish + Orcadian + Tabassaran @ 10.886559
    10 Danish + North_Swedish + Tabassaran + West_Norwegian @ 10.907677
    11 North_Swedish + Norwegian + Tabassaran + West_Norwegian @ 10.927035
    12 North_Swedish + Tabassaran + West_Norwegian + West_Scottish @ 10.938675
    13 Norwegian + Orcadian + Tabassaran + West_Norwegian @ 10.940564
    14 Norwegian + Norwegian + Tabassaran + West_Norwegian @ 11.004442
    15 Danish + Norwegian + Tabassaran + West_Norwegian @ 11.032894
    16 Danish + North_Swedish + Orcadian + Tabassaran @ 11.043543
    17 Norwegian + Norwegian + Orcadian + Tabassaran @ 11.066937
    18 Tabassaran + West_Norwegian + West_Norwegian + West_Scottish @ 11.073636
    19 North_Swedish + North_Swedish + Tabassaran + West_Norwegian @ 11.125616
    20 North_Swedish + Orcadian + Swedish + Tabassaran @ 11.148820
    Y: H-M69 -> H-M82 -> SK1225 -> H-Z5888 -> H-Z5890 -> H-CTS8144 [CTS8144/PF1741/M5498] -> Z34531 (H1a1a4b3b1a8~)
    found 2875 BCE -> Jiroft/IVC Periphery 11459 Shahr-i-Sokte BA2
    mtDNA:U2a1a

    G25 Ancients Dist 0.79 IND_Roopkund_A 51.05 IRN_Shahr_I_Sokhta_BA2 46.64 MAR_Iberomaurusian2.04PAK_Katelai_IA0.19 TKM_Gonur2_BA 0.08

    Lactose Persistence rs3213871 rs4988243 rs4988183 rs3769005 rs2236783
    found -> DA125, Kangju

  2. The Following 2 Users Say Thank You to tipirneni For This Useful Post:

     misnomer (01-25-2020),  palamede (01-24-2020)

  3. #2
    Registered Users
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    United States of America India
    For more artifacts visit
    https://sogdians.si.edu/
    Y: H-M69 -> H-M82 -> SK1225 -> H-Z5888 -> H-Z5890 -> H-CTS8144 [CTS8144/PF1741/M5498] -> Z34531 (H1a1a4b3b1a8~)
    found 2875 BCE -> Jiroft/IVC Periphery 11459 Shahr-i-Sokte BA2
    mtDNA:U2a1a

    G25 Ancients Dist 0.79 IND_Roopkund_A 51.05 IRN_Shahr_I_Sokhta_BA2 46.64 MAR_Iberomaurusian2.04PAK_Katelai_IA0.19 TKM_Gonur2_BA 0.08

    Lactose Persistence rs3213871 rs4988243 rs4988183 rs3769005 rs2236783
    found -> DA125, Kangju

  4. #3
    Quote Originally Posted by tipirneni View Post
    For more artifacts visit
    https://sogdians.si.edu/
    What other steppe ancients are there in that 1000 database?

  5. #4
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    Quote Originally Posted by misnomer View Post
    What other steppe ancients are there in that 1000 database?
    Below are the populations found to be used on the MCM6 hapmap site

    ESN GWD LWK MSL YRI AFR ACB ASW AFR_AMR CLM MXL PEL PUR AMR CDX CHB CHS ASN FIN GBR IBS TSI EUR CEU EUR_AMR BEB ITU JPT KHV PJL STU SAN GIH SAN_AMR
    Esan in Nigeria Gambian in Western Division, The Gambia Luhya in Webuye, Kenya Mende in Sierra Leone Yoruba in Ibadan, Nigeria African Caribbean in Barbados African Ancestry in Southwest US Colombian in Medellin, Colombia Mexican Ancestry in Los Angeles, California Peruvian in Lima, Peru Puerto Rican in Puerto Rico Chinese Dai in Xishuangbanna, China Han Chinese in Bejing, China Southern Han Chinese, China Finnish in Finland British in England and Scotland Iberian populations in Spain Toscani in Italy Utah residents with Northern and Western European ancestry Bengali in Bangladesh Indian Telugu in the UK Japanese in Tokyo, Japan Kinh in Ho Chi Minh City, Vietnam Punjabi in Lahore,Pakistan Sri Lankan Tamil in the UK Gujarati Indian in Houston,TX
    Y: H-M69 -> H-M82 -> SK1225 -> H-Z5888 -> H-Z5890 -> H-CTS8144 [CTS8144/PF1741/M5498] -> Z34531 (H1a1a4b3b1a8~)
    found 2875 BCE -> Jiroft/IVC Periphery 11459 Shahr-i-Sokte BA2
    mtDNA:U2a1a

    G25 Ancients Dist 0.79 IND_Roopkund_A 51.05 IRN_Shahr_I_Sokhta_BA2 46.64 MAR_Iberomaurusian2.04PAK_Katelai_IA0.19 TKM_Gonur2_BA 0.08

    Lactose Persistence rs3213871 rs4988243 rs4988183 rs3769005 rs2236783
    found -> DA125, Kangju

  6. The Following User Says Thank You to tipirneni For This Useful Post:

     misnomer (01-25-2020)

  7. #5
    Quote Originally Posted by tipirneni View Post
    Below are the populations found to be used on the MCM6 hapmap site

    ESN GWD LWK MSL YRI AFR ACB ASW AFR_AMR CLM MXL PEL PUR AMR CDX CHB CHS ASN FIN GBR IBS TSI EUR CEU EUR_AMR BEB ITU JPT KHV PJL STU SAN GIH SAN_AMR
    Esan in Nigeria Gambian in Western Division, The Gambia Luhya in Webuye, Kenya Mende in Sierra Leone Yoruba in Ibadan, Nigeria African Caribbean in Barbados African Ancestry in Southwest US Colombian in Medellin, Colombia Mexican Ancestry in Los Angeles, California Peruvian in Lima, Peru Puerto Rican in Puerto Rico Chinese Dai in Xishuangbanna, China Han Chinese in Bejing, China Southern Han Chinese, China Finnish in Finland British in England and Scotland Iberian populations in Spain Toscani in Italy Utah residents with Northern and Western European ancestry Bengali in Bangladesh Indian Telugu in the UK Japanese in Tokyo, Japan Kinh in Ho Chi Minh City, Vietnam Punjabi in Lahore,Pakistan Sri Lankan Tamil in the UK Gujarati Indian in Houston,TX
    ah i understand. let me rephrase. Are there other steppe ancients with both those SNPs?

  8. #6
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    Quote Originally Posted by misnomer View Post
    ah i understand. let me rephrase. Are there other steppe ancients with both those SNPs?
    http://www.open-genomes.org/genomes/Eurasian%20Steppe/
    site has all the ancient genomes published
    DA2/
    DA4/
    DA5/
    DA7/
    DA8/
    DA13/
    DA15/
    DA16/
    DA17/
    DA19/
    DA20/
    DA23/
    DA27/
    DA28/
    DA29/
    DA30/
    DA31/
    DA38/
    DA39/
    DA41/
    DA43/
    DA45/
    DA47/
    DA48/
    DA49/
    DA50/
    DA51/
    DA52/
    DA53/
    DA54/
    DA55/
    DA56/
    DA57/
    DA58/
    DA59/
    DA65/
    DA72/
    DA74/
    DA80/
    DA81/
    DA85/
    DA86/
    DA87/
    DA89/
    DA92/
    DA93/
    DA94/
    DA95/
    DA96/
    DA98/
    DA100/
    DA101/
    DA105/
    DA106/
    DA111/
    DA117/
    DA119/
    DA124/
    DA125/
    DA126/
    DA127/
    DA129/
    DA130/
    DA134/
    DA141/
    DA142/
    DA144/
    DA145/
    DA161/
    DA162/
    DA171/
    DA177/
    DA179/
    DA188/
    DA189/
    DA190/
    DA197/
    DA198/
    DA203/
    DA204/
    DA206/
    DA207/
    DA208/
    DA220/
    DA221/
    DA222/
    DA223/
    DA224/
    DA228/
    DA229/
    DA230/
    DA243/
    DA343/
    DA353/
    DA356/
    DA361/
    DA385/
    Y: H-M69 -> H-M82 -> SK1225 -> H-Z5888 -> H-Z5890 -> H-CTS8144 [CTS8144/PF1741/M5498] -> Z34531 (H1a1a4b3b1a8~)
    found 2875 BCE -> Jiroft/IVC Periphery 11459 Shahr-i-Sokte BA2
    mtDNA:U2a1a

    G25 Ancients Dist 0.79 IND_Roopkund_A 51.05 IRN_Shahr_I_Sokhta_BA2 46.64 MAR_Iberomaurusian2.04PAK_Katelai_IA0.19 TKM_Gonur2_BA 0.08

    Lactose Persistence rs3213871 rs4988243 rs4988183 rs3769005 rs2236783
    found -> DA125, Kangju

  9. The Following User Says Thank You to tipirneni For This Useful Post:

     misnomer (01-25-2020)

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