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Thread: First Finnish ancient Y-DNA

  1. #1
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    First Finnish ancient Y-DNA

    I only got to reading paper by Majander et al (2020) about syphilis and noticed there were two samples from Finland. PD28 is male and was buried in Porvoo. CHS119 is female and was buried in Turku. I processed both their samples using nf-core/eager. According to Yleaf 2.3 PD28's Y haplogroup is N1a1a1a1a. PD28 seems to be mostly Finnish and CHS119 Swedish.

    Anyone want to confirm my findings?

    Resulting BAMs and autosomal data. ERR4495008= PD28, ERR4494995 = CHS119.

    https://drive.google.com/drive/folde...CC?usp=sharing

    The paper:

    https://www.cell.com/current-biology...822(20)31083-6
    Last edited by teepean47; 09-09-2020 at 04:29 PM.

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  3. #2
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    ERR4495008:
    Last edited by David Bush; 09-09-2020 at 06:38 PM.

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  5. #3
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    What is the context (time, culture) for that N guy?

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    Quote Originally Posted by parastais View Post
    What is the context (time, culture) for that N guy?

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  8. #5
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    Can it be Treponema pallidum ssp. pallidum (syphilis) was brought to the Scandinavian/Baltic area by the Vikings as they were on Newfoundland and the American northeast coast as early as the 10th century
    Alain Dad
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  9. #6
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    Quote Originally Posted by Alain View Post
    Can it be Treponema pallidum ssp. pallidum (syphilis) was brought to the Scandinavian/Baltic area by the Vikings as they were on Newfoundland and the American northeast coast as early as the 10th century
    It is a possibility but I couldn't find any syphilis related studies that used North American aDNA samples.

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  11. #7
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    Quote Originally Posted by teepean47 View Post

    Resulting BAMs and autosomal data. ERR4495008= PD28, ERR4494995 = CHS119.

    https://drive.google.com/drive/folde...CC?usp=sharing
    Quote Originally Posted by Norfern-Ostrobothnian View Post
    Fixed it. Ideally I would want to convert it straight to eigenstrat, but a PED or binary PED works too.
    https://drive.google.com/drive/folde...LSDAla98KdGhCC
    Please guide this friend

  12. #8
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    Quote Originally Posted by David Bush View Post
    Please guide this friend
    I uploaded pileupCaller's Eigenstrat files to the Google Drive folder.

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  14. #9
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