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Thread: BAM Files is Available (A dynamic 6,000-year genetic history of Eurasia's Eastern )

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    BAM Files is Available (A dynamic 6,000-year genetic history of Eurasia's Eastern )

    BAM Files is Available

    A dynamic 6,000-year genetic history of Eurasia's Eastern Steppe

    https://www.ebi.ac.uk/ena/browser/view/PRJEB35748

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  3. #2
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    Finland, Pohjois-Pohjanmaa
    Ethnicity
    Finn
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    Finnish
    Y-DNA (P)
    I1a1b-L22 [P109-]

    Finland
    Genetic changes.png
    From the supplementary.

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     David Bush (10-23-2020)

  5. #3
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    Brazil
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    Rio de Janeiro Colonial
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    J1a1 FGC6064+ M365+
    mtDNA (M)
    H1ao1

    Suebi Kingdom Portugal 1143 Portugal 1485 Portugal Order of Christ Brazilian Empire Brazil
    Very good ! What are the Y-DNA SNPs of the Afanasievo's samples ?
    J1 FGC5987 to FGC6175 (188 new SNPs)
    MDKAs before Colonial Brazil
    Y-DNA - Milhazes, Barcelos, Minho, Portugal.
    mtDNA - Ilha Terceira, Azores, Portugal
    North_Swedish + PT + PT + PT @ 3.96 EUtest 4

  6. #4
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    Brazil
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    Y-DNA (P)
    J1a1 FGC6064+ M365+
    mtDNA (M)
    H1ao1

    Suebi Kingdom Portugal 1143 Portugal 1485 Portugal Order of Christ Brazilian Empire Brazil
    Afanasievo

    The J1 sample is here - {"study_accession":"PRJEB35748","sample_accession" :"SAMEA6491012","experiment_accession":"ERX3841512 ","run_accession":"ERR3828888","tax_id":"9606","sc ientific_name":"Homo sapiens","fastq_ftp":"ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/008/ERR3828888/ERR3828888.fastq.gz","submitted_ftp":"ftp.sra.ebi. ac.uk/vol1/run/ERR382/ERR3828888/SHT002.A0101.bam","sra_ftp":"ftp.sra.ebi.ac.uk/vol1/err/ERR382/008/ERR3828888"}

    The R1b sample is here - {"study_accession":"PRJEB35748","sample_accession" :"SAMEA6491011","experiment_accession":"ERX3841510 ","run_accession":"ERR3828886","tax_id":"9606","sc ientific_name":"Homo sapiens","fastq_ftp":"ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/006/ERR3828886/ERR3828886.fastq.gz","submitted_ftp":"ftp.sra.ebi. ac.uk/vol1/run/ERR382/ERR3828886/SHT001.B0101.bam","sra_ftp":"ftp.sra.ebi.ac.uk/vol1/err/ERR382/006/ERR3828886"}
    ,
    {"study_accession":"PRJEB35748","sample_accession" :"SAMEA6491011","experiment_accession":"ERX3841511 ","run_accession":"ERR3828887","tax_id":"9606","sc ientific_name":"Homo sapiens","fastq_ftp":"ftp.sra.ebi.ac.uk/vol1/fastq/ERR382/007/ERR3828887/ERR3828887.fastq.gz","submitted_ftp":"ftp.sra.ebi. ac.uk/vol1/run/ERR382/ERR3828887/SHT001.B0102.ss.bam","sra_ftp":"ftp.sra.ebi.ac.uk/vol1/err/ERR382/007/ERR3828887"}
    J1 FGC5987 to FGC6175 (188 new SNPs)
    MDKAs before Colonial Brazil
    Y-DNA - Milhazes, Barcelos, Minho, Portugal.
    mtDNA - Ilha Terceira, Azores, Portugal
    North_Swedish + PT + PT + PT @ 3.96 EUtest 4

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  8. #5

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  10. #6
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    SHT001
    is
    R1b1a1b1a1-P311 3 READ

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    SHT002
    is
    J1a2~-CTS11731

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     Agamemnon (10-23-2020),  grumpydaddybear (10-24-2020),  J1 DYS388=13 (10-23-2020),  Jatt1 (10-25-2020),  Megalophias (10-23-2020),  parasar (10-24-2020),  RCO (10-23-2020)

  14. #8
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    Brazil
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    H1ao1

    Suebi Kingdom Portugal 1143 Portugal 1485 Portugal Order of Christ Brazilian Empire Brazil
    Quote Originally Posted by David Bush View Post
    SHT002
    is
    J1a2~-CTS11731
    Any other downstream SNP ?
    J1 FGC5987 to FGC6175 (188 new SNPs)
    MDKAs before Colonial Brazil
    Y-DNA - Milhazes, Barcelos, Minho, Portugal.
    mtDNA - Ilha Terceira, Azores, Portugal
    North_Swedish + PT + PT + PT @ 3.96 EUtest 4

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     grumpydaddybear (10-23-2020)

  16. #9
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    Quote Originally Posted by RCO View Post
    Any other downstream SNP ?
    https://www.yfull.com/arch-7.01/tree/J-FGC5447/

    1 read

    Of course I'm due to lack of time
    I analyze quickly
    So it is better to wait for the analysis of experienced friends
    Last edited by David Bush; 10-23-2020 at 12:23 PM.

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  18. #10
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    Suebi Kingdom Portugal 1143 Portugal 1485 Portugal Order of Christ Brazilian Empire Brazil
    In the supplementary they showed J1a (J-CTS5368) so he could be Y29696, CTS1026, FGC6064, ZS6599 or L136 ?
    J1 FGC5987 to FGC6175 (188 new SNPs)
    MDKAs before Colonial Brazil
    Y-DNA - Milhazes, Barcelos, Minho, Portugal.
    mtDNA - Ilha Terceira, Azores, Portugal
    North_Swedish + PT + PT + PT @ 3.96 EUtest 4

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     David Bush (10-23-2020)

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