The mixed genetic origin of the first farmers of Europe

[maroco]

Deleted

[maroco]

Mozabites

Distance: 1.8672% / 0.01867240
Target: Mozabite:HGDP01280
46.0 Early_European_Farmer
39.4 Iberomaurusian
6.7 Africa_Mesolithic
3.7 Iran_Neolithic
2.2 Steppe_Pastoralist
1.6 Western_Hunter-Gatherer
0.4 Early_Levantine_Farmer

Distance: 2.4451% / 0.02445133
Target: Mozabite:HGDP01279
44.5 Early_European_Farmer
36.5 Iberomaurusian
7.9 Africa_Mesolithic
6.4 Iran_Neolithic
3.7 Steppe_Pastoralist
1.0 Western_Hunter-Gatherer

Distance: 2.1385% / 0.02138527
Target: Mozabite:HGDP01278
42.9 Early_European_Farmer
35.3 Iberomaurusian
8.3 Steppe_Pastoralist
7.7 Africa_Mesolithic
3.6 Early_Levantine_Farmer
2.0 Iran_Neolithic
0.2 Ancient_Iberian_Hunter-Gatherer

Distance: 3.1499% / 0.03149898
Target: Mozabite:HGDP01277
38.6 Early_European_Farmer
36.7 Iberomaurusian
9.3 Steppe_Pastoralist
8.8 Africa_Mesolithic
3.5 Iran_Neolithic
3.1 Early_Levantine_Farmer

Distance: 2.7849% / 0.02784950
Target: Mozabite:HGDP01276
42.4 Early_European_Farmer
37.1 Iberomaurusian
11.0 Africa_Mesolithic
4.8 Caucasus_Hunter-gatherer
4.4 Steppe_Pastoralist
0.3 Early_Levantine_Farmer

Distance: 3.1558% / 0.03155808
Target: Mozabite:HGDP01275
44.3 Early_European_Farmer
35.5 Iberomaurusian
7.6 Steppe_Pastoralist
7.3 Africa_Mesolithic
3.2 Early_Levantine_Farmer
1.9 Iran_Neolithic
0.2 Western_Hunter-Gatherer

Distance: 3.8856% / 0.03885585
Target: Mozabite:HGDP01274
38.3 Early_European_Farmer
34.2 Iberomaurusian
14.9 Africa_Mesolithic
7.5 Steppe_Pastoralist
4.2 Early_Levantine_Farmer
0.6 Iran_Neolithic
0.3 Western_Hunter-Gatherer

Distance: 2.7588% / 0.02758822
Target: Mozabite:HGDP01273
35.5 Early_European_Farmer
26.4 Iberomaurusian
13.2 Early_Levantine_Farmer
9.7 Steppe_Pastoralist
9.5 Africa_Mesolithic
4.6 Iran_Neolithic
1.1 Caucasus_Hunter-gatherer

Distance: 3.0421% / 0.03042073
Target: Mozabite:HGDP01272
40.6 Early_European_Farmer
36.2 Iberomaurusian
5.7 Steppe_Pastoralist
5.6 Africa_Mesolithic
5.4 Caucasus_Hunter-gatherer
4.6 Early_Levantine_Farmer
1.9 Iran_Neolithic

Distance: 2.9817% / 0.02981736
Target: Mozabite:HGDP01268
37.6 Early_European_Farmer
36.4 Iberomaurusian
8.1 Africa_Mesolithic
7.8 Early_Levantine_Farmer
4.2 Iran_Neolithic
4.1 Steppe_Pastoralist
1.8 Caucasus_Hunter-gatherer

Distance: 2.8698% / 0.02869780
Target: Mozabite:HGDP01266
38.9 Early_European_Farmer
36.9 Iberomaurusian
10.1 Steppe_Pastoralist
7.9 Africa_Mesolithic
3.5 Iran_Neolithic
2.7 Early_Levantine_Farmer

Distance: 2.1791% / 0.02179130
Target: Mozabite:HGDP01265
46.3 Early_European_Farmer
38.2 Iberomaurusian
7.9 Africa_Mesolithic
7.2 Steppe_Pastoralist
0.4 Iran_Neolithic

Distance: 2.7051% / 0.02705056
Target: Mozabite:HGDP01264
42.8 Early_European_Farmer
36.1 Iberomaurusian
6.9 Africa_Mesolithic
6.9 Steppe_Pastoralist
4.3 Iran_Neolithic
1.8 Western_Hunter-Gatherer
1.2 Early_Levantine_Farmer

Distance: 1.7905% / 0.01790471
Target: Mozabite:HGDP01263
47.7 Early_European_Farmer
33.5 Iberomaurusian
8.6 Steppe_Pastoralist
4.5 Africa_Mesolithic
3.7 Iran_Neolithic
1.3 Early_Levantine_Farmer
0.7 Western_Hunter-Gatherer

Distance: 2.8649% / 0.02864878
Target: Mozabite:HGDP01262
35.8 Early_European_Farmer
31.8 Iberomaurusian
10.2 Africa_Mesolithic
9.9 Early_Levantine_Farmer
5.5 Steppe_Pastoralist
4.8 Iran_Neolithic
2.0 Western_Hunter-Gatherer

Distance: 3.4674% / 0.03467444
Target: Mozabite:HGDP01260
36.8 Early_European_Farmer
35.3 Iberomaurusian
11.0 Africa_Mesolithic
6.1 Steppe_Pastoralist
3.7 Caucasus_Hunter-gatherer
3.3 Early_Levantine_Farmer
2.5 Iran_Neolithic
1.3 Western_Hunter-Gatherer

Distance: 3.4674% / 0.03467395
Target: Mozabite:HGDP01259
40.7 Early_European_Farmer
31.9 Iberomaurusian
11.4 Africa_Mesolithic
5.5 Steppe_Pastoralist
5.4 Iran_Neolithic
3.0 Early_Levantine_Farmer
2.1 Western_Hunter-Gatherer

Distance: 2.1298% / 0.02129760
Target: Mozabite:HGDP01258
38.0 Early_European_Farmer
34.2 Iberomaurusian
8.4 Steppe_Pastoralist
7.3 Africa_Mesolithic
6.1 Early_Levantine_Farmer
4.6 Iran_Neolithic
1.0 Caucasus_Hunter-gatherer
0.4 Western_Hunter-Gatherer

Distance: 3.6551% / 0.03655074
Target: Mozabite:HGDP01257
43.9 Early_European_Farmer
38.0 Iberomaurusian
11.0 Africa_Mesolithic
3.8 Iran_Neolithic
1.7 Caucasus_Hunter-gatherer
0.8 Western_Hunter-Gatherer
0.7 Steppe_Pastoralist
0.1 Early_Levantine_Farmer

Distance: 2.7971% / 0.02797069
Target: Mozabite:HGDP01256
41.8 Early_European_Farmer
32.2 Iberomaurusian
11.2 Africa_Mesolithic
10.1 Steppe_Pastoralist
2.8 Early_Levantine_Farmer
1.9 Iran_Neolithic

Distance: 3.4240% / 0.03423995
Target: Mozabite:HGDP01255
46.1 Early_European_Farmer
25.4 Iberomaurusian
15.3 Steppe_Pastoralist
10.6 Africa_Mesolithic
2.6 Western_Hunter-Gatherer

Distance: 2.9426% / 0.02942640
Target: Mozabite:HGDP01254
39.3 Early_European_Farmer
35.3 Iberomaurusian
9.7 Steppe_Pastoralist
8.1 Africa_Mesolithic
4.5 Early_Levantine_Farmer
3.1 Iran_Neolithic

Distance: 2.7435% / 0.02743475
Target: Mozabite:HGDP01253
45.7 Early_European_Farmer
36.8 Iberomaurusian
8.6 Africa_Mesolithic
8.0 Steppe_Pastoralist
0.9 Iran_Neolithic

Guanches

Distance: 2.9281% / 0.02928058
Target: Canary_Islands_Guanche:gun012
40.1 Early_European_Farmer
39.8 Iberomaurusian
7.0 Steppe_Pastoralist
6.5 Early_Levantine_Farmer
5.9 Africa_Mesolithic
0.4 Caucasus_Hunter-gatherer
0.3 Western_Hunter-Gatherer

Distance: 2.1511% / 0.02151080
Target: Canary_Islands_Guanche:gun011
38.0 Iberomaurusian
37.5 Early_European_Farmer
8.2 Steppe_Pastoralist
5.6 Early_Levantine_Farmer
4.7 Africa_Mesolithic
3.3 Iran_Neolithic
2.7 Western_Hunter-Gatherer

Distance: 2.2143% / 0.02214272
Target: Canary_Islands_Guanche:gun008
44.9 Early_European_Farmer
30.4 Iberomaurusian
12.0 Steppe_Pastoralist
6.0 Africa_Mesolithic
5.9 Early_Levantine_Farmer
0.8 Western_Hunter-Gatherer

Distance: 2.7399% / 0.02739895
Target: Canary_Islands_Guanche:gun005
43.8 Early_European_Farmer
29.1 Iberomaurusian
10.6 Steppe_Pastoralist
7.7 Early_Levantine_Farmer
4.2 Western_Hunter-Gatherer
4.1 Africa_Mesolithic
0.5 Ancient_Dravidian

Distance: 3.0572% / 0.03057166
Target: Canary_Islands_Guanche:gun002
42.3 Early_European_Farmer
40.1 Iberomaurusian
5.9 Steppe_Pastoralist
4.8 Africa_Mesolithic
3.0 Early_Levantine_Farmer
2.0 Iran_Neolithic
1.7 Ancient_Dravidian
0.2 Northeastern_Asia_Neolithic

[beyoku]

^ Where do Fulani show up using those stats?

[Echo]

^ Where do Fulani show up using those stats?

Fulanis.

Target: Fulani:T_Fulani-1.DG
Distance: 2.5368% / 0.02536765
52.4 Yoruba
21.6 MAR_Taforalt
14.0 TUR_Barcin_C
6.6 Levant_Natufian
5.4 Dinka

Target: Fulani:T_Fulani-2.DG
Distance: 2.2809% / 0.02280915
52.6 Yoruba
21.2 MAR_Taforalt
15.8 TUR_Barcin_C
6.8 Dinka
3.6 Levant_Natufian

[maroco]

^ Where do Fulani show up using those stats?

Distance: 12.9745% / 0.12974549
Target: Fulani:T_Fulani-2.DG
52.3 Africa_Mesolithic
34.2 Iberomaurusian
10.7 Early_European_Farmer
2.8 Steppe_Pastoralist

Distance: 12.7942% / 0.12794238
Target: Fulani:T_Fulani-1.DG
50.9 Africa_Mesolithic
35.2 Iberomaurusian
12.5 Early_European_Farmer
1.4 Steppe_Pastoralist

[Kristiina]

What is Africa Mesolithic?

[drobbah]

Distance: 12.9745% / 0.12974549
Target: Fulani:T_Fulani-2.DG
52.3 Africa_Mesolithic
34.2 Iberomaurusian
10.7 Early_European_Farmer
2.8 Steppe_Pastoralist

Distance: 12.7942% / 0.12794238
Target: Fulani:T_Fulani-1.DG
50.9 Africa_Mesolithic
35.2 Iberomaurusian
12.5 Early_European_Farmer
1.4 Steppe_Pastoralist

You need to replace Shum Lake with Yoruba...that's why those fits are terrible

[maroco]

You need to replace Shum Lake with Yoruba...that's why those fits are terrible

Yoruba has ana inside it, Shum Laka is free of this. Using a modern sample like yoruba in a Neolithic model creates unrealistic results. You can see the results are near identical despite different distances

A simulated west african sample without ana
Distance: 2.2836% / 0.02283587
Target: Fulani:T_Fulani-2.DG
49.2 West_African_(simulated)
38.1 Iberomaurusian
8.2 Early_European_Farmer
2.6 Africa_Mesolithic
1.2 Steppe_Pastoralist
0.7 Caucasus_Hunter-gatherer

Distance: 1.8478% / 0.01847764
Target: Fulani:T_Fulani-1.DG
48.8 West_African_(simulated)
38.7 Iberomaurusian
10.0 Early_European_Farmer
1.7 Africa_Mesolithic
0.8 Steppe_Pastoralist

[Riverman]

You need to replace Shum Lake with Yoruba...that's why those fits are terrible

I did no high level models which are worth being posted, but I tried Mandenka, Yoruba and Igbo, and they all have significant Northern ancestry Shum Laka lacks, even though Shum Laka itself seems already mixed and no representative of the "pure Basal African" lineages at all. And they have more of it than people to the South East of Nigeria, in regions with higher pre-ANA-like ancestry. But in fact even Pygmies have the North Eastern admixture, there are no pure representatives left, which is why we need ancient DNA to help out. Just thousand years older than Shum Laka might make a big difference for some regions in SSA.

[beyoku]

Yoruba has ana inside it, Shum Laka is free of this. Using a modern sample like yoruba in a Neolithic model creates unrealistic results. You can see the results are near identical despite different distances

A simulated west african sample without ana
Distance: 2.2836% / 0.02283587
Target: Fulani:T_Fulani-2.DG
49.2 West_African_(simulated)
38.1 Iberomaurusian
8.2 Early_European_Farmer
2.6 Africa_Mesolithic
1.2 Steppe_Pastoralist
0.7 Caucasus_Hunter-gatherer

Distance: 1.8478% / 0.01847764
Target: Fulani:T_Fulani-1.DG
48.8 West_African_(simulated)
38.7 Iberomaurusian
10.0 Early_European_Farmer
1.7 Africa_Mesolithic
0.8 Steppe_Pastoralist

IMO i would suggest to always include posting data on Fulani to put things in perspective of what a non Maghreb population with Strong North African admixtures looks like and how high it is compared to contemporary Berber speakers.
They retain this ancestry with few of the typically Berber uniparental cues.