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Thread: Anthrogenica community Interpretome chart

  1. #1
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    Anthrogenica community Interpretome chart

    Following on from this thread, where users have shared their specific locations on Interpretome's PCA. Comparing everyone's positions relative to each other would be an interesting exercise.

    To participate, please follow the instructions below. As details on Interpretome's maps can only be visualised by focusing on one region, this currently caters for those largely of West Eurasian ancestry genetically (North African, European, Middle-Eastern, South-Central Asian).

    I'll be periodically updating the map as more samples come through. [P.S. please include your ancestral information as you'd prefer it shown on the map with your samples, thank you.]

    Code:
    1. Visit http://www.interpretome.com/ and upload your data
    2. Select "PCA"
    3. Pick the following settings:
    -- HGDP:World
    -- Resolution 100,000
    -- Principal Components to Plot PC1, PC2
    4. Click "Visualize!"
    5. Once the map loads, highlight the area around your location to zoom in (thanks to Zeph for pointing this out)
    6. Print screen, save to an image editor, and share on this thread (provide coordinates if desired as MfA's done)
    Anthrogenica community5.png

  2. The Following 16 Users Say Thank You to DMXX For This Useful Post:

     Agamemnon (01-28-2015),  AJL (03-07-2014),  escalation (03-08-2014),  evon (03-07-2014),  Hanna (03-09-2014),  Humanist (03-08-2014),  icebreaker (03-22-2014),  MfA (03-07-2014),  MitchellSince1893 (03-08-2014),  NK19191 (03-07-2014),  Sangarius (03-07-2014),  Sein (03-07-2014),  Tolan (03-08-2014),  Varun R (02-03-2015),  vettor (03-08-2014),  ZephyrousMandaru (03-07-2014)

  3. #2
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    Quote Originally Posted by DMXX View Post
    Following on from this thread, where users have shared their specific locations on Interpretome's PCA. Comparing everyone's positions relative to each other would be an interesting exercise.

    To participate, please follow the instructions below. As details on Interpretome's maps can only be visualised by focusing on one region, this currently caters for those largely of West Eurasian ancestry genetically (North African, European, Middle-Eastern, South-Central Asian).

    I'll be periodically updating the map as more samples come through.

    Code:
    1. Visit http://www.interpretome.com/ and upload your data
    2. Select "PCA"
    3. Pick the following settings:
    -- HGDP:World
    -- Resolution 100,000
    -- Principal Components to Plot PC1, PC2
    4. Click "Visualize!"
    5. Once the map loads, highlight the area around your location to zoom in (thanks to Zeph for pointing this out)
    6. Print screen, save to an image editor, and share on this thread
    done

    I did not click the box on left with my name on it...............should I have?

    Uploaded with ImageShack.us


    My Path = ( K-M9+, TL-P326+, T-M184+, L490+, M70+, PF5664+, L131+, L446+, CTS933+, CTS3767+, CTS8862+, Z19945+, BY143483+ )


    Grandfather via paternal grandmother = I1-Y33791 ydna
    Great grandmother paternal side = T1a1e mtdna

  4. The Following 2 Users Say Thank You to vettor For This Useful Post:

     NK19191 (03-07-2014),  Sein (03-07-2014)

  5. #3
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    Quote Originally Posted by vettor View Post
    done

    I did not click the box on left with my name on it...............should I have?
    I can't use this for two reasons:
    - As explained, you haven't zoomed in on your area. I need a definitive view within West Eurasia ("Once the map loads, highlight the area around your location to zoom in")
    - Your location is in-between Europe and Africa. I can't plot you on the community map because of this.

    You're welcome to include a zoom-in anyway, in case I manage to create a detailed worldwide map somehow in the future.

  6. #4
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    My coordinates
    X: 58,0791
    Y: -52,479465

    http://abload.de/img/desktop_2014_03_07_138udim.png
    Last edited by MfA; 03-07-2014 at 11:48 AM.
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

  7. The Following 8 Users Say Thank You to MfA For This Useful Post:

     DMXX (03-07-2014),  Hanna (03-09-2014),  NK19191 (03-07-2014),  Sangarius (03-07-2014),  soulblighter (03-07-2014),  Varun R (02-03-2015),  ZephyrousMandaru (03-07-2014)

  8. #5
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    Quote Originally Posted by MfA View Post
    My coordinates
    X: 58,0791
    Y: -52,479465

    http://abload.de/img/desktop_2014_03_07_138udim.png
    Can these coordinates be superimposed on a map?

  9. #6
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    United States of America Dravida Nadu
    not really fitting into the map indicated...but here is where I plot anyways

    Attachment 1558
    Last edited by Mandoos; 03-07-2014 at 02:11 PM.

  10. The Following 5 Users Say Thank You to Mandoos For This Useful Post:

     DMXX (03-07-2014),  NK19191 (03-07-2014),  Sein (03-07-2014),  soulblighter (03-07-2014),  Varun R (02-03-2015)

  11. #7
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    India United States of America Chola Empire India Maratha Empire
    And here is my zoomed in plot
    zoom.jpg

    Cood: -67.39,43.2885
    Last edited by soulblighter; 03-07-2014 at 03:07 PM.
    Paternal YDNA: G-P303+ -> G-Z30522+
    Paternal mtDNA: U7a3b1
    Maternal YDNA: R-Z2123+ -> R-YP526+
    Maternal mtDNA: C4a1 (T195C!)

  12. The Following 4 Users Say Thank You to soulblighter For This Useful Post:

     DMXX (03-07-2014),  Mandoos (03-07-2014),  MfA (03-07-2014),  Varun R (02-03-2015)

  13. #8
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    Quote Originally Posted by ZephyrousMandaru View Post
    Can these coordinates be superimposed on a map?
    I guess it can be similarly done by Palisto's calculators, but would that be accurate using only 7 reference samples?
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

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     ZephyrousMandaru (03-07-2014)

  15. #9
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    Map updated to include MfA, soulblighter.

    Quote Originally Posted by Mandoos View Post
    not really fitting into the map indicated...but here is where I plot anyways

    Attachment 1558
    Thank you nonetheless; as mentioned to vettor, if I do manage to have the means of expanding this level of detail, I'll happily include the samples eventually.

  16. The Following 4 Users Say Thank You to DMXX For This Useful Post:

     Mandoos (03-07-2014),  MfA (03-07-2014),  soulblighter (03-07-2014),  ZephyrousMandaru (03-07-2014)

  17. #10
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    Quote Originally Posted by DMXX View Post
    I can't use this for two reasons:
    - As explained, you haven't zoomed in on your area. I need a definitive view within West Eurasia ("Once the map loads, highlight the area around your location to zoom in")
    - Your location is in-between Europe and Africa. I can't plot you on the community map because of this.

    You're welcome to include a zoom-in anyway, in case I manage to create a detailed worldwide map somehow in the future.
    Thanks

    I think it was an error anyway as I get a warning from interpretome that only 30 SNPs where loaded...............I re-downloaded a new file from 23andme and get the same issue

    regards


    My Path = ( K-M9+, TL-P326+, T-M184+, L490+, M70+, PF5664+, L131+, L446+, CTS933+, CTS3767+, CTS8862+, Z19945+, BY143483+ )


    Grandfather via paternal grandmother = I1-Y33791 ydna
    Great grandmother paternal side = T1a1e mtdna

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