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Thread: Need help! Which Dante Labs file for getting Global 25?

  1. #11
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    Wow! Thank you so much! (Well, no, I couldn't open your previous screenshot. However I could watch this one.)
    The software has run! Nevertheless it says it doesn't find the BAM.BAI file (wich is there too). It also shows the following window: "This BAM file has a very low average reading depth. This can lead to incorrect data. If you have a bam file from a better sequencing run for this person, then you should better use that one."
    What can I do?
    Thanks a lot!

  2. #12
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    Wow! Thank you so much! (Well, no, I couldn't open your previous screenshot. However I could watch this one.)
    The software has run! Nevertheless it says it doesn't find the BAM.BAI file (wich is there too). It also shows the following window: "This BAM file has a very low average reading depth. This can lead to incorrect data. If you have a bam file from a better sequencing run for this person, then you should better use that one."
    What can I do?
    Thanks a lot!

    P.S. = Do I have to merge my BAM and my BAM.BAI files? If yes, how can I do it?
    Thanks.

  3. #13
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    Wow! Thank you so much! (Well, no, I couldn't open your previous screenshot. However I could watch this one.)
    The software has run! Nevertheless it says it doesn't find the BAM.BAI file (wich is there too). It also shows the following window: "This BAM file has a very low average reading depth. This can lead to incorrect data. If you have a bam file from a better sequencing run for this person, then you should better use that one."
    What can I do?
    Thanks a lot!

    P.S. = Do I have to merge my BAM and my BAM.BAI files? If yes, how can I do it?
    Thanks.

  4. #14
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    Quote Originally Posted by Mithras Enkidu View Post
    Wow! Thank you so much! (Well, no, I couldn't open your previous screenshot. However I could watch this one.)
    The software has run! Nevertheless it says it doesn't find the BAM.BAI file (wich is there too). It also shows the following window: "This BAM file has a very low average reading depth. This can lead to incorrect data. If you have a bam file from a better sequencing run for this person, then you should better use that one."
    What can I do?
    Thanks a lot!

    P.S. = Do I have to merge my BAM and my BAM.BAI files? If yes, how can I do it?
    Thanks.
    You don't have to merge the BAM and bai files.

    In a previous post I mentioned that you should check the date and time of your bai file. It should be after the date/time of your BAM file (refer to the screenshot in my last post). If it's before then delete and download it again.

    I haven't seen the "low coverage" error myself and the online manual only mentions this error if a FTDNA BAM file is selected.

    Are you able to post screenshots of the "Settings" tab and also after clicking the "Show statistics..." button on the "Other" tab?

    It's possible that there is an issue with the quality your BAM file, in which case you should reach out to Dante Labs.

  5. The Following User Says Thank You to ssamlal For This Useful Post:

     Mithras Enkidu (02-26-2021)

  6. #15
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    OK, thanks. First of all, I delete and re-download my files, in the case a problem occured during my first download (?).
    I'll let you know.

    Once again, thank you very much for your precious help!

  7. #16
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    Hi back! I was right to download the file again, as it seems that it was corrupted! Here is what I get now:

    Z WGSExtract 1.JPGZ WGSExtract 2.JPGZ WGSExtract 3.JPGZ WGSExtract 4.JPG

  8. #17
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    OK, I give it up!
    I'm unable to use WSGExtract. Now it doesn't find the /tmp file.
    I'm really fed up with it.

    However Dante Labs also provides a VCF (TAR.GZ file). I wish I could convert it with DNA Kit Studio, but I really don't understand why this software aks me a Raw Data Output!
    What is it supposed to be?
    Thanks!

    EDIT: It is not explained in the Support section!
    Last edited by Mithras Enkidu; 03-02-2021 at 11:12 AM.

  9. #18
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    Here is the screenshot.
    Z DNA Kit Studio.JPG

  10. #19
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    Quote Originally Posted by Mithras Enkidu View Post
    Here is the screenshot.
    Z DNA Kit Studio.JPG
    You can use PLINK to convert a VCF file to a 23andMe format. Not too complicated of a procedure but I would advise you to take a few minutes and read the page I linked on how to use the program.

  11. The Following User Says Thank You to altvred For This Useful Post:

     Mithras Enkidu (03-18-2021)

  12. #20
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    Hi! Thank you very much for yor help!

    I wasn't abble to use WGSExtract as I really suck in informatics. It's really not my thing!
    However I finally have been able to convert my SNP.VCF file to a 23andMe file thanks to DNA Kit Studio!
    Honestly, I needed to try a lots of times before getting it!
    But I finally could get my G25 from my Dante Labs data!
    It has been a long, long story!

  13. The Following 3 Users Say Thank You to Mithras Enkidu For This Useful Post:

     Lenny Nero (03-20-2021),  ssamlal (03-18-2021),  ThaYamamoto (03-18-2021)

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