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Thread: YSEQ Phenotype Predictor

  1. #1
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    YSEQ Phenotype Predictor

    https://phenotype.yseq.net/

    Uploaded combined 23andMe and MyHeritage raw data and got this:





    11/41 SNPs were missing.

    In reality I have straight dark brown hair, green eyes, light/moderate skin, no freckles and I tan decently as long as I put enough sunscreen.

    Post your own!

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    Pretty cool, I don't have any freckles but it's accurate other than that.


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    I'm a Filipino with freckles and albino hair.


    [1] "distance%=1.9178"

    JJJ

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    Blonde hair and freckles seem to get overestimated. Ι wonder if it gets more accurate for people who have done a WGS test and have all SNPs covered.

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    Quote Originally Posted by peloponnesian View Post
    Blonde hair and freckles seem to get overestimated. Ι wonder if it gets more accurate for people who have done a WGS test and have all SNPs covered.
    Does this work for surveys? 23andme works like this.

    I also do not understand what this refers to with dark / olive skin type, if it is type SSA or just a summer Mediterranean tan, if it is the second case there is a European bias ...

    [1] "distance%=1.9178"

    JJJ

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    Berber_EMA,7.8

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    Quote Originally Posted by JJJ View Post
    Does this work for surveys? 23andme works like this.
    It's based on IrisPlex. I'd guess it's based on GWAS studies rather than simple surveying. Researchers certainly have a problem deciding whether green eyes are a variation of blue or whether they are intermediate between blue and brown, for example this predictor considers them intermediate but 23andMe groups blue and green eyes together.

    Quote Originally Posted by JJJ View Post
    I also do not understand what this refers to with dark / olive skin type, if it is type SSA or just a summer Mediterranean tan, if it is the second case there is a European bias ...
    Yeah I'm pretty sure light/pale skin refers to extremely pale phenotypes you find in Ireland, Finland, etc.

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    Quote Originally Posted by peloponnesian View Post
    Blonde hair and freckles seem to get overestimated. Ι wonder if it gets more accurate for people who have done a WGS test and have all SNPs covered.
    It would work better for people who have coverage for all the SNPs, they probably released this tool to try and hype up the new WGS service YSEQ is offering

    I thought it would be interesting to upload the 23andMe kits I extracted from BAMs of aDNA samples over the years.

    Here are some for Mesolithic Hunter-Gatherers from Eastern Europe (EHG):

    PES001 (EHG, Archangelsk Russia)


    KarelliaHG(EHG, Karelia, Russia)

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  14. #8
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    Didn't work for me.

    Error: No ASCII file found in uploaded file / root directory of uploaded archive
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    Same error for me

  16. #10
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    The site couldn't handle the traffic and probably crashed

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