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Thread: I1 Full Genome SNP's

  1. #1
    Registered Users
    Posts
    131
    Sex
    Location
    Eastern Norway
    Nationality
    Norwegian
    Y-DNA (P)
    I1-FGC9496
    mtDNA (M)
    H1b1-T16362C
    mtDNA (P)
    I4a

    Norway Sweden Finland Denmark Norway Kven Sami

    I1 Full Genome SNP's

    I am interested in sharing Full genomes results with other in Haplogroup I1.
    By comparing results, we will hopefully be able to further define the I1 Y-DNA haplogroup tree.


    Here are my private SNPs from FGC:
    3303478 T A FGC9453+
    3388822 T C FGC9454+
    3668564 C G FGC9455+
    4444936 G A FGC9456+
    4987878 A G FGC9457+
    5551207 T C FGC9458+
    5834796 G T FGC9459+
    6103010 A G FGC9460+
    6672477 G A FGC9461+
    6695480 C T FGC9462+
    7197645 G A FGC9463+
    7204707 T C FGC9464+
    7338341 A G FGC9465+
    7456400 A G FGC8764+
    7584061 C T FGC9466+
    8035203 T C FGC9467+
    8208733 T C FGC9468+
    8839135 T G FGC9469+
    13140276 G T FGC9470+
    13592509 G A FGC9471+
    13940998 C T FGC9472+
    14361248 T C FGC9473+
    14383315 G A FGC9474+
    14389871 G A FGC9475+
    14522697 C G FGC9476+
    14592731 G A FGC9477+
    14787756 G A FGC9478+
    14823182 G A FGC9479+
    15275092 G T FGC9480+
    16315573 A G FGC9481+
    16524548 C A FGC9482+; site of S18432
    16790229 T C FGC9483+
    17246495 A G FGC9484+
    18395614 A T FGC9485+
    18593683 A T FGC9486+
    18949040 T A FGC9487+
    18989021 C A FGC9488+
    19061754 G A FGC9489+
    19306350 G A FGC9490+
    21094601 T A FGC9491+
    21384837 C A FGC9492+
    21426337 A G FGC9493+
    21657006 G C FGC9494+
    22208780 C A FGC9495+
    22714704 G C FGC9496+
    23483502 C G FGC9497+
    25031165 T C FGC9498+

    and my private INDELs:
    2919286 GTAT GT FGC9499+
    3709796 TTGGTGG TTGG FGC9500+
    3483637 GA GAGACA FGC8694+
    18756845 TGG TG FGC9501+
    23809031 ACCCC ACCC FGC9502+
    24476189 CA C FGC9503+

  2. #2
    Registered Users
    Posts
    41
    Sex

    You and I already found that we share 3 of the following SNPs (between I-L813 and I-Z74),
    My private SNPs:
    4043226 G A FGC8758+
    4892097 T C FGC8759+
    6020743 G A FGC8760+
    6378130 G T FGC8761+
    7069535 C T FGC8762+
    7453026 C T FGC8763+
    7456400 A G FGC8764+
    7624088 G C FGC8765+
    7676734 T C FGC8766+
    8578046 T A FGC8767+
    9084531 A C FGC8768+
    9095823 A T FGC8769+
    9375815 G T FGC8770+
    13197146 C T FGC8771+
    13228700 C A FGC8772+
    13925632 C T FGC8773+
    15438493 T G FGC8774+
    15898839 A T FGC8775+
    16540880 G A FGC8776+
    16626822 T C FGC8777+
    17022606 C T FGC8778+
    17947290 T G FGC8779+
    18088372 G T FGC8780+
    19252940 C T FGC8781+
    19335055 T C FGC8782+
    20818420 A T FGC8783+
    21935820 C A FGC8784+
    22469979 A T FGC3510+
    22473990 T A FGC8785+
    22489745 A T FGC8786+
    23045728 A G FGC8787+
    28764933 G A FGC8788+

    And my private INDEL

    17062505 TAAA TA FGC8789+

    All of the above are of > 99% or 95% reliability per FGC.
    Last edited by pyromatic; 03-28-2014 at 04:06 PM.

  3. #3
    Registered Users
    Posts
    41
    Sex

    I submitted my data for analysis by the yfull team. While I am still digging through their analysis, I am very pleased with both FGC and YFull. The following are the best quality SNPs I was given by YFull.

    *ChrY: 2807122***YFS057509 C to T
    *ChrY: 4043226***YFS057521 G to A
    *ChrY: 4892097***YFS057541 T to C
    *ChrY: 6020743***YFS057551 G to A
    *ChrY: 6926080***YFS057564 A to G
    *ChrY: 7069535***YFS057568 C to T
    *ChrY: 7676734***YFS057578 T to C
    *ChrY: 8578046***YFS057584 T to A
    *ChrY: 9095823***YFS057587 A to T
    *ChrY: 9375815***YFS057588 G to T
    *ChrY: 13925632***YFS057600 C to T
    *ChrY: 15438493***YFS057616 T to G
    *ChrY: 15898839***YFS057625 A to T
    *ChrY: 16540880***YFS057634 G to A
    *ChrY: 16626822***YFS057635 T to C
    *ChrY: 17022606***YFS057643 C to T
    *ChrY: 17581353***YFS057649 T to A
    *ChrY: 17648373***YFS057651 G to C
    *ChrY: 17947290***YFS057653 T to G
    *ChrY: 18088372***YFS057657 G to T
    *ChrY: 19252940***YFS057664 C to T
    *ChrY: 19335055***YFS057668 T to C
    *ChrY: 20818420***YFS057677 A to T
    *ChrY: 21935820***YFS057689 C to A
    *ChrY: 22216687***YFS057694 A to T
    *ChrY: 23045728***YFS057942 A to G
    *ChrY: 28764933***YFS057967 G to A

  4. #4
    Junior Member
    Posts
    6
    Sex

    Downstream of z74

    7549521 Consensus allele: C Reference allele: G Named FGC12551 found in 4 big y kits

    Downstream of Cts2208 (Not found in L287 )

    6834008 Consensus allele: A Reference allele: G Named FGC12553 found in 2 Big Y Kits
    8885613 Consensus allele: T Reference allele: C Named FGC12554 found in 2 Big Y Kits
    8885761 Consensus allele: T Reference allele: C Named FGC12555 found in 2 Big Y Kits
    15614381 Consensus allele: G Reference allele: T Named FGC12557 found in 2 Big Y Kits
    16402552 Consensus allele: A Reference allele: G Named FGC12558 found in 2 Big Y Kits
    16475648 Consensus allele: T Reference allele: C Named FGC12559 found in 2 Big Y Kits
    17113406 Consensus allele: G Reference allele: C Named FGC12560 found in 2 Big Y Kits
    18608123 Consensus allele: G Reference allele: A Named FGC12561 found in 2 Big Y kits
    19318850 Consensus allele: C Reference allele: T Named FGC12562 found in 2 Big Y Kits
    22302920 Consensus allele: A Reference allele: T Named FGC12563 found in 2 Big Y Kits
    23613999 Consensus allele: C Reference allele: T Named FGC12564 found in 2 Big Y Kits

    novel variants fgc.jpg
    Last edited by C.Goodell; 07-07-2014 at 10:27 PM.

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