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Thread: Need help! Which Dante Labs file for getting Global 25?

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    Exclamation Need help! Which Dante Labs file for getting Global 25?

    Hi!

    I need your help!
    I recently took a test with Dante Labs. This company proposes to download their files in ten different formats. I sent them Davidski to have my Global 25 done from that company but he says they're too big. Does someone know which exact file format I have to send him?

    Thank you very much!
    Last edited by Mithras Enkidu; 02-14-2021 at 12:05 PM.

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    Have you converted your file through wgs studio first?

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    Quote Originally Posted by Mithras Enkidu View Post
    Hi!

    I need your help!
    I recently took a test with Dante Labs. This company proposes to download their files in ten different formats. I sent them Davidski to have my Global 25 done from that company but he says they're too big. Does someone know which exact file format I have to send him?

    Thank you very much!
    See https://wgsextract.github.io/ for the WGS Extract program and manual.

    Use WGS Extract and your Dante Labs 30x WGS BAM and BAM.bai files to create one or more autosomal file(s). I chose the "combined file - RECOMMENDED" option. The steps are in the manual.

    Upload the zip file to a shared drive (e.g. Google Drive), and provide Davidski with the link to the shared file.

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    Hi! Thank you very much!

    However when I'm trying it, I'm receiving the following message:
    "The BAM file and the path of the BAM file must not contain spaces or special chars. Please rename the path or the BAM file to meet these criteria."
    How can I do it? Thanks! ^^

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    I think the .bam file should be in the same folder as WGS Extract, or actually in the WGS extract folder

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    Check the path where your BAM & BAI files are stored. Make sure there are no spaces between words (I replaced spaces with underscores). Also make sure you don't have special characters (the "&" symbol is one that shows up the most; remove it or replace it with the word "and").

    Also check the date and time of your bai file. It should be after the date/time of your BAM file. I downloaded the bai file first, then had to delete and download it again. Make sure both files are in the same folder.

    Path for BAM file.png
    Attachment 43372
    Last edited by ssamlal; 02-18-2021 at 12:17 AM. Reason: adding screenshot

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    ignore; I was able to add the screenshot to my previous post.
    Last edited by ssamlal; 02-18-2021 at 12:21 AM.

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    Thank you very much! I'm going to try it!

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    Hi! The name of the file is "GFX0435462", with absolutely no space beween the letters and numbers and no date attached with the tittle either! I changed this name into into "AND", I trid it again, but I still get that same damn error message!
    Do you please know another software? I'm difinitely done with this useless WSGExtract program!
    Thank you!

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    Hey Mithras,

    Did you look at the screenshot in my previous post?

    Check the path where you file is stored (using Windows file explorer).

    My path was this (notice the spaces in the folder names):
    D\DNA Data Files\Dante Labs\GFX0450466

    I updated all the folder names in the path (replacing spaces with underscores):
    D\DNA_Data_Files\Dante_Labs\GFX0450466

    You should see the file date in Windows file explorer.

    Path for BAM file v2.png

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