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Thread: G25 coordinates for UK 1000 Genomes samples

  1. #1
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    G2a

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    G25 coordinates for UK 1000 Genomes samples

    G25 coordinates for some of the British 1000 Genomes samples, courtesy of David.

    Most had the generic UK/British label in the Reich Lab annotation files except for that lone sample listed as Scottish.

    https://drive.google.com/file/d/10-t...ew?usp=sharing

     



    Code:
    Scaled
    
    British:HG00096,0.132035,0.129988,0.065619,0.052003,0.036007,0.015339,0.000235,0.008077,0.000409,0.002369,-0.00341,0.007493,-0.013379,-0.014588,0.025108,0.002652,-0.012386,0.002407,0.001508,-0.002251,0.003993,0.006306,0.005669,0.008676,-0.002634
    British:HG00097,0.127482,0.132019,0.063733,0.050388,0.035391,0.018128,0.00329,0.003231,0.010635,0.005103,-0.00747,0.004046,-0.013379,-0.00523,0.024565,-0.007558,-0.023469,0.005321,0.002263,-0.001501,0.005989,0.007543,0.007148,0.024461,-0.001916
    British:HG00099,0.135449,0.136081,0.069767,0.050388,0.034468,0.01757,0.00564,0.002769,0,0.00164,-0.01088,0.004046,-0.008771,-0.011285,0.029587,-0.002387,-0.023991,0.00114,0.00352,0.002376,0.007487,0.00272,-0.003574,0.013255,-0.002036
    British:HG00100,0.133173,0.13405,0.059208,0.043282,0.037238,0.020638,0.0047,0.004154,0.011044,0.002187,-0.00747,0.006894,-0.015461,-0.016377,0.022122,0.006895,-0.012386,0.002154,0.006536,0.006753,0.001497,0.002102,-0.000616,0.021208,-0.006466
    British:HG00101,0.132035,0.13405,0.063733,0.043928,0.042162,0.019801,0.005875,0.006231,0.000614,0.008383,-0.002761,0.002698,-0.016799,-0.003441,0.020494,0.004906,-0.014473,-0.002027,0.001257,-0.00025,0.013975,-0.002102,0.00037,0.006386,-0.001557
    British:HG00102,0.134311,0.126941,0.063356,0.060724,0.041238,0.023985,-0.00282,0.011769,0.011658,0.004556,-0.012504,0.005395,-0.00446,-0.021469,0.02633,0.016706,-0.009779,0.007728,0.004777,0.006753,-0.001497,0.001484,-0.000493,0.019159,0.006347
    British:HG00107,0.138864,0.128972,0.064865,0.049419,0.042162,0.020917,0.00564,0.009,0.010226,-0.000911,0.000162,-0.000749,-0.008325,-0.008395,0.018322,0.006629,-0.012778,-0.005701,-0.002137,0.002126,-0.001747,0.003091,0.000739,0.007712,0.003592
    British:HG00108,0.130897,0.13405,0.066373,0.040052,0.0437,0.019522,0.003055,0.006923,0.001023,0.000364,-0.001624,0.002098,-0.007582,-0.014038,0.023615,0.003182,-0.01369,0.003167,0.00352,-0.001251,0.004991,0.00136,0.007148,-0.00012,0.001676
    British:HG00109,0.137726,0.128972,0.062602,0.039729,0.044624,0.018128,0.0047,0.012692,0.006749,0.007107,-0.004709,0.004796,-0.019921,-0.005092,0.013708,0.002254,-0.007041,-0.001647,0.001257,-0.001626,0.006489,0.005564,-0.002342,0.01458,-0.001197
    British:HG00110,0.137726,0.128972,0.060716,0.052649,0.037238,0.014223,0.004935,0.007384,0.0045,0.001276,-0.001461,0.004796,-0.013974,-0.011973,0.02918,0.012994,0.00326,0.00114,-0.002765,0.004627,-0.00287,-0.002597,0.000123,0.018195,-0.001078
    British:HG00111,0.135449,0.133034,0.059962,0.060401,0.040623,0.021753,-0.00376,0.002538,0.008181,0,-0.008931,0.006444,-0.015461,-0.018029,0.016015,0.016441,0.007041,-0.005068,-0.002765,-0.005002,0.007237,0.009398,-0.00419,0.021449,-0.000479
    British:HG00112,0.134311,0.13405,0.058077,0.052972,0.036007,0.021196,0.005405,0.004615,-0.000409,0.00164,-0.003897,0.007793,-0.012785,-0.000963,0.015744,0.004243,-0.009127,-0.00228,0.00729,0.005002,0.001872,-0.001113,-0.001232,0.013978,0.001916
    British:HG00113,0.129758,0.139128,0.065619,0.047158,0.036622,0.012829,0.000705,0.01223,0.009817,-0.000547,-0.006333,0.008842,-0.015015,-0.010597,0.026058,0.001989,-0.019818,0.006461,0.003645,-0.002126,0.006863,0.001731,-0.004314,0.007712,0.00491
    British:HG00114,0.129758,0.137096,0.058831,0.045543,0.045855,0.018686,0.003995,0.011769,-0.000614,0.000182,-0.003085,0.012139,-0.01665,-0.013212,0.029994,-0.007823,-0.016037,-0.002027,0.004022,0.002876,0.011105,0.007296,-0.005916,0.01205,-0.004311
    British:HG00115,0.129758,0.135065,0.053174,0.041344,0.03693,0.008925,0.004465,0.004154,0.003068,0.004009,0.002273,0.013638,-0.013677,-0.013212,0.019408,0.002519,-0.003651,0.0019,-0.004022,0.008004,0.006863,-0.00272,0.000616,0.013978,0.003473
    British:HG00116,0.135449,0.137096,0.062225,0.041667,0.039084,0.015618,0.00235,0.007154,-0.000205,-0.001822,-0.001786,-0.001199,-0.003419,-0.020093,0.021715,0.003713,-0.008345,0.0019,-0.002137,0.005378,0.010107,-0.000247,-0.003081,0.01446,-0.001676
    British:HG00117,0.137726,0.133034,0.059962,0.042959,0.040931,0.019522,-0.001175,0.002308,0.001023,0.002187,-0.009419,0.007643,-0.017393,-0.009909,0.024701,0.005304,-0.008214,-0.000507,0.011187,0.010755,-0.004742,0.006059,0.00949,0.015906,0.000479
    British:HG00118,0.135449,0.132019,0.065242,0.049419,0.037545,0.014781,0.00188,0.002308,0.007158,0.00164,-0.005034,0.003297,-0.008622,-0.022708,0.02158,0.009812,-0.010952,0.000507,0.003897,0.002876,0.002121,0.008903,0.000246,0.014701,0.00467
    British:HG00119,0.133173,0.126941,0.065996,0.045543,0.042162,0.02008,-0.00141,0.011076,0.005318,0.003645,-0.007307,0.006894,-0.01888,-0.01445,0.022801,0.005436,-0.016559,0.000633,-0.000628,0.002001,0.006863,0.005193,-0.001109,0.015303,0.001317
    British:HG00120,0.134311,0.139128,0.061094,0.053941,0.041546,0.02259,0.00705,0.007846,0.011658,0.002916,-0.012342,0.007793,-0.010109,-0.015138,0.018865,0.009281,-0.002608,0.000633,0.002011,0.005378,0.005989,0.003091,-0.006409,0.017954,0.00467
    British:HG00121,0.135449,0.13405,0.063733,0.057494,0.036314,0.021753,0.00611,0.009923,-0.003477,0.000911,-0.006333,0.008093,-0.016799,-0.016102,0.028366,0.013524,0.000782,-0.002914,-0.001006,0.005378,0.009608,0.002844,-0.001725,0.018195,-0.004311
    British:HG00122,0.135449,0.128972,0.07467,0.049096,0.0437,0.015897,0.00235,0.007154,0.007567,0.009476,-0.004222,0.007343,-0.008176,-0.009221,0.021037,0.0118,-0.008866,-0.001267,-0.005656,0.005002,0.005241,0.002473,0.000739,0.019039,-0.003832
    British:HG00123,0.130897,0.131003,0.061094,0.047804,0.032006,0.01757,0.00752,0.010615,0.002454,-0.000547,-0.00682,0.01124,-0.011893,-0.012248,0.025787,-0.001989,-0.026989,0.00228,-0.001508,0.004252,0.010856,0.009645,0.00037,0.009158,-0.00491
    British:HG00124,0.134311,0.135065,0.06675,0.042636,0.04647,0.012271,-0.000235,0.004615,0.002045,0.005649,-0.006171,0.008093,-0.00773,-0.012111,0.020901,0.019358,0.00691,-0.003294,-0.001131,0.006503,-0.003369,0.005688,-0.005176,0.020846,-0.00491
    British:HG00125,0.130897,0.128972,0.069013,0.059432,0.044008,0.016455,0.00141,0.006231,-0.001023,-0.006925,-0.011367,0.007343,-0.004757,-0.007432,0.016286,0.011138,-0.01017,0.00076,0.004651,0.006753,0.003369,0.003215,-0.002218,0.01446,0.006227
    British:HG00238,0.129758,0.132019,0.056191,0.043605,0.036622,0.010598,-0.002115,0.003692,0.011249,0.011481,-0.011367,0.001649,-0.014717,-0.01679,0.023344,0.006497,0,0.000127,0.005908,0.001626,0.007487,0.00272,0.001602,0.011206,0.000599
    British:HG00240,0.133173,0.135065,0.057699,0.047804,0.039084,0.013666,0.007755,0.007846,0.003886,0.004738,-0.007307,0.001049,-0.011893,-0.017753,0.021715,0.005304,-0.01017,-0.0019,0.000377,0.002501,0.010232,0.002102,0.000616,0.00253,-0.002155
    Scottish_Argyll_Bute:HG00106,0.135449,0.132019,0.059962,0.05491,0.03693,0.022869,0.00564,0.006231,-0.005113,0.000547,-0.003573,0.010641,-0.010406,-0.012248,0.032573,-0.007558,-0.025555,0.004181,0.006913,-0.000625,0.001622,-0.000618,-0.004437,0.009519,-0.000479
    
    
    Raw
    
    British:HG00096,0.0116,0.0128,0.0174,0.0161,0.0117,0.0055,0.0001,0.0035,0.0002,0.0013,-0.0021,0.005,-0.009,-0.0106,0.0185,0.002,-0.0095,0.0019,0.0012,-0.0018,0.0032,0.0051,0.0046,0.0072,-0.0022
    British:HG00097,0.0112,0.013,0.0169,0.0156,0.0115,0.0065,0.0014,0.0014,0.0052,0.0028,-0.0046,0.0027,-0.009,-0.0038,0.0181,-0.0057,-0.018,0.0042,0.0018,-0.0012,0.0048,0.0061,0.0058,0.0203,-0.0016
    British:HG00099,0.0119,0.0134,0.0185,0.0156,0.0112,0.0063,0.0024,0.0012,0,0.0009,-0.0067,0.0027,-0.0059,-0.0082,0.0218,-0.0018,-0.0184,0.0009,0.0028,0.0019,0.006,0.0022,-0.0029,0.011,-0.0017
    British:HG00100,0.0117,0.0132,0.0157,0.0134,0.0121,0.0074,0.002,0.0018,0.0054,0.0012,-0.0046,0.0046,-0.0104,-0.0119,0.0163,0.0052,-0.0095,0.0017,0.0052,0.0054,0.0012,0.0017,-0.0005,0.0176,-0.0054
    British:HG00101,0.0116,0.0132,0.0169,0.0136,0.0137,0.0071,0.0025,0.0027,0.0003,0.0046,-0.0017,0.0018,-0.0113,-0.0025,0.0151,0.0037,-0.0111,-0.0016,0.001,-0.0002,0.0112,-0.0017,0.0003,0.0053,-0.0013
    British:HG00102,0.0118,0.0125,0.0168,0.0188,0.0134,0.0086,-0.0012,0.0051,0.0057,0.0025,-0.0077,0.0036,-0.003,-0.0156,0.0194,0.0126,-0.0075,0.0061,0.0038,0.0054,-0.0012,0.0012,-0.0004,0.0159,0.0053
    British:HG00107,0.0122,0.0127,0.0172,0.0153,0.0137,0.0075,0.0024,0.0039,0.005,-0.0005,0.0001,-0.0005,-0.0056,-0.0061,0.0135,0.005,-0.0098,-0.0045,-0.0017,0.0017,-0.0014,0.0025,0.0006,0.0064,0.003
    British:HG00108,0.0115,0.0132,0.0176,0.0124,0.0142,0.007,0.0013,0.003,0.0005,0.0002,-0.001,0.0014,-0.0051,-0.0102,0.0174,0.0024,-0.0105,0.0025,0.0028,-0.001,0.004,0.0011,0.0058,-0.0001,0.0014
    British:HG00109,0.0121,0.0127,0.0166,0.0123,0.0145,0.0065,0.002,0.0055,0.0033,0.0039,-0.0029,0.0032,-0.0134,-0.0037,0.0101,0.0017,-0.0054,-0.0013,0.001,-0.0013,0.0052,0.0045,-0.0019,0.0121,-0.001
    British:HG00110,0.0121,0.0127,0.0161,0.0163,0.0121,0.0051,0.0021,0.0032,0.0022,0.0007,-0.0009,0.0032,-0.0094,-0.0087,0.0215,0.0098,0.0025,0.0009,-0.0022,0.0037,-0.0023,-0.0021,0.0001,0.0151,-0.0009
    British:HG00111,0.0119,0.0131,0.0159,0.0187,0.0132,0.0078,-0.0016,0.0011,0.004,0,-0.0055,0.0043,-0.0104,-0.0131,0.0118,0.0124,0.0054,-0.004,-0.0022,-0.004,0.0058,0.0076,-0.0034,0.0178,-0.0004
    British:HG00112,0.0118,0.0132,0.0154,0.0164,0.0117,0.0076,0.0023,0.002,-0.0002,0.0009,-0.0024,0.0052,-0.0086,-0.0007,0.0116,0.0032,-0.007,-0.0018,0.0058,0.004,0.0015,-0.0009,-0.001,0.0116,0.0016
    British:HG00113,0.0114,0.0137,0.0174,0.0146,0.0119,0.0046,0.0003,0.0053,0.0048,-0.0003,-0.0039,0.0059,-0.0101,-0.0077,0.0192,0.0015,-0.0152,0.0051,0.0029,-0.0017,0.0055,0.0014,-0.0035,0.0064,0.0041
    British:HG00114,0.0114,0.0135,0.0156,0.0141,0.0149,0.0067,0.0017,0.0051,-0.0003,0.0001,-0.0019,0.0081,-0.0112,-0.0096,0.0221,-0.0059,-0.0123,-0.0016,0.0032,0.0023,0.0089,0.0059,-0.0048,0.01,-0.0036
    British:HG00115,0.0114,0.0133,0.0141,0.0128,0.012,0.0032,0.0019,0.0018,0.0015,0.0022,0.0014,0.0091,-0.0092,-0.0096,0.0143,0.0019,-0.0028,0.0015,-0.0032,0.0064,0.0055,-0.0022,0.0005,0.0116,0.0029
    British:HG00116,0.0119,0.0135,0.0165,0.0129,0.0127,0.0056,0.001,0.0031,-0.0001,-0.001,-0.0011,-0.0008,-0.0023,-0.0146,0.016,0.0028,-0.0064,0.0015,-0.0017,0.0043,0.0081,-0.0002,-0.0025,0.012,-0.0014
    British:HG00117,0.0121,0.0131,0.0159,0.0133,0.0133,0.007,-0.0005,0.001,0.0005,0.0012,-0.0058,0.0051,-0.0117,-0.0072,0.0182,0.004,-0.0063,-0.0004,0.0089,0.0086,-0.0038,0.0049,0.0077,0.0132,0.0004
    British:HG00118,0.0119,0.013,0.0173,0.0153,0.0122,0.0053,0.0008,0.001,0.0035,0.0009,-0.0031,0.0022,-0.0058,-0.0165,0.0159,0.0074,-0.0084,0.0004,0.0031,0.0023,0.0017,0.0072,0.0002,0.0122,0.0039
    British:HG00119,0.0117,0.0125,0.0175,0.0141,0.0137,0.0072,-0.0006,0.0048,0.0026,0.002,-0.0045,0.0046,-0.0127,-0.0105,0.0168,0.0041,-0.0127,0.0005,-0.0005,0.0016,0.0055,0.0042,-0.0009,0.0127,0.0011
    British:HG00120,0.0118,0.0137,0.0162,0.0167,0.0135,0.0081,0.003,0.0034,0.0057,0.0016,-0.0076,0.0052,-0.0068,-0.011,0.0139,0.007,-0.002,0.0005,0.0016,0.0043,0.0048,0.0025,-0.0052,0.0149,0.0039
    British:HG00121,0.0119,0.0132,0.0169,0.0178,0.0118,0.0078,0.0026,0.0043,-0.0017,0.0005,-0.0039,0.0054,-0.0113,-0.0117,0.0209,0.0102,0.0006,-0.0023,-0.0008,0.0043,0.0077,0.0023,-0.0014,0.0151,-0.0036
    British:HG00122,0.0119,0.0127,0.0198,0.0152,0.0142,0.0057,0.001,0.0031,0.0037,0.0052,-0.0026,0.0049,-0.0055,-0.0067,0.0155,0.0089,-0.0068,-0.001,-0.0045,0.004,0.0042,0.002,0.0006,0.0158,-0.0032
    British:HG00123,0.0115,0.0129,0.0162,0.0148,0.0104,0.0063,0.0032,0.0046,0.0012,-0.0003,-0.0042,0.0075,-0.008,-0.0089,0.019,-0.0015,-0.0207,0.0018,-0.0012,0.0034,0.0087,0.0078,0.0003,0.0076,-0.0041
    British:HG00124,0.0118,0.0133,0.0177,0.0132,0.0151,0.0044,-0.0001,0.002,0.001,0.0031,-0.0038,0.0054,-0.0052,-0.0088,0.0154,0.0146,0.0053,-0.0026,-0.0009,0.0052,-0.0027,0.0046,-0.0042,0.0173,-0.0041
    British:HG00125,0.0115,0.0127,0.0183,0.0184,0.0143,0.0059,0.0006,0.0027,-0.0005,-0.0038,-0.007,0.0049,-0.0032,-0.0054,0.012,0.0084,-0.0078,0.0006,0.0037,0.0054,0.0027,0.0026,-0.0018,0.012,0.0052
    British:HG00238,0.0114,0.013,0.0149,0.0135,0.0119,0.0038,-0.0009,0.0016,0.0055,0.0063,-0.007,0.0011,-0.0099,-0.0122,0.0172,0.0049,0,0.0001,0.0047,0.0013,0.006,0.0022,0.0013,0.0093,0.0005
    British:HG00240,0.0117,0.0133,0.0153,0.0148,0.0127,0.0049,0.0033,0.0034,0.0019,0.0026,-0.0045,0.0007,-0.008,-0.0129,0.016,0.004,-0.0078,-0.0015,0.0003,0.002,0.0082,0.0017,0.0005,0.0021,-0.0018
    Scottish_Argyll_Bute:HG00106,0.0119,0.013,0.0159,0.017,0.012,0.0082,0.0024,0.0027,-0.0025,0.0003,-0.0022,0.0071,-0.007,-0.0089,0.024,-0.0057,-0.0196,0.0033,0.0055,-0.0005,0.0013,-0.0005,-0.0036,0.0079,-0.0004
    YDNA (P): R-Y33
    YDNA (P, maternal line): R-Y20756
    YDNA(M): E-Y6938

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  3. #2
    Suspended Account
    Posts
    2,961
    Ethnicity
    Northern Ireland
    Nationality
    Northern Irish
    Y-DNA (P)
    R1b-L193(BY2634)
    Y-DNA (M)
    R1b-M222

    Northern Ireland Ireland Scotland
    Target: Owen_scaled
    Distance: 1.5542% / 0.01554215
    33.4 British:HG00110
    24.4 British:HG00118
    15.0 British:HG00123
    13.8 British:HG00121
    3.8 British:HG00111
    3.6 British:HG00240
    3.4 British:HG00120
    2.6 British:HG00102

    Target: OwenDad_scaled
    Distance: 2.3874% / 0.02387391
    38.0 British:HG00110
    16.0 British:HG00121
    14.6 British:HG00124
    14.0 British:HG00120
    12.8 British:HG00111
    4.6 British:HG00115

    Target: OwenMom_scaled
    Distance: 1.5134% / 0.01513417
    32.0 British:HG00121
    15.2 Scottish_Argyll_Bute:HG00106
    14.8 British:HG00123
    12.6 British:HG00124
    7.8 British:HG00097
    5.0 British:HG00111
    4.4 British:HG00122
    3.2 British:HG00096
    2.8 British:HG00120
    1.6 British:HG00240
    0.6 British:HG00114

  4. #3
    Registered Users
    Posts
    381
    Sex
    Location
    north africa
    Ethnicity
    berber
    Nationality
    Morocco
    Y-DNA (P)
    E-Y141637*
    mtDNA (M)
    V7

    Morocco Algeria MoroccoPreColonial Byzantine Empire
    Quote Originally Posted by altvred View Post
    G25 coordinates for some of the British 1000 Genomes samples, courtesy of David.

    Most had the generic UK/British label in the Reich Lab annotation files except for that lone sample listed as Scottish.

    https://drive.google.com/file/d/10-t...ew?usp=sharing

     



    Code:
    Scaled
    
    British:HG00096,0.132035,0.129988,0.065619,0.052003,0.036007,0.015339,0.000235,0.008077,0.000409,0.002369,-0.00341,0.007493,-0.013379,-0.014588,0.025108,0.002652,-0.012386,0.002407,0.001508,-0.002251,0.003993,0.006306,0.005669,0.008676,-0.002634
    British:HG00097,0.127482,0.132019,0.063733,0.050388,0.035391,0.018128,0.00329,0.003231,0.010635,0.005103,-0.00747,0.004046,-0.013379,-0.00523,0.024565,-0.007558,-0.023469,0.005321,0.002263,-0.001501,0.005989,0.007543,0.007148,0.024461,-0.001916
    British:HG00099,0.135449,0.136081,0.069767,0.050388,0.034468,0.01757,0.00564,0.002769,0,0.00164,-0.01088,0.004046,-0.008771,-0.011285,0.029587,-0.002387,-0.023991,0.00114,0.00352,0.002376,0.007487,0.00272,-0.003574,0.013255,-0.002036
    British:HG00100,0.133173,0.13405,0.059208,0.043282,0.037238,0.020638,0.0047,0.004154,0.011044,0.002187,-0.00747,0.006894,-0.015461,-0.016377,0.022122,0.006895,-0.012386,0.002154,0.006536,0.006753,0.001497,0.002102,-0.000616,0.021208,-0.006466
    British:HG00101,0.132035,0.13405,0.063733,0.043928,0.042162,0.019801,0.005875,0.006231,0.000614,0.008383,-0.002761,0.002698,-0.016799,-0.003441,0.020494,0.004906,-0.014473,-0.002027,0.001257,-0.00025,0.013975,-0.002102,0.00037,0.006386,-0.001557
    British:HG00102,0.134311,0.126941,0.063356,0.060724,0.041238,0.023985,-0.00282,0.011769,0.011658,0.004556,-0.012504,0.005395,-0.00446,-0.021469,0.02633,0.016706,-0.009779,0.007728,0.004777,0.006753,-0.001497,0.001484,-0.000493,0.019159,0.006347
    British:HG00107,0.138864,0.128972,0.064865,0.049419,0.042162,0.020917,0.00564,0.009,0.010226,-0.000911,0.000162,-0.000749,-0.008325,-0.008395,0.018322,0.006629,-0.012778,-0.005701,-0.002137,0.002126,-0.001747,0.003091,0.000739,0.007712,0.003592
    British:HG00108,0.130897,0.13405,0.066373,0.040052,0.0437,0.019522,0.003055,0.006923,0.001023,0.000364,-0.001624,0.002098,-0.007582,-0.014038,0.023615,0.003182,-0.01369,0.003167,0.00352,-0.001251,0.004991,0.00136,0.007148,-0.00012,0.001676
    British:HG00109,0.137726,0.128972,0.062602,0.039729,0.044624,0.018128,0.0047,0.012692,0.006749,0.007107,-0.004709,0.004796,-0.019921,-0.005092,0.013708,0.002254,-0.007041,-0.001647,0.001257,-0.001626,0.006489,0.005564,-0.002342,0.01458,-0.001197
    British:HG00110,0.137726,0.128972,0.060716,0.052649,0.037238,0.014223,0.004935,0.007384,0.0045,0.001276,-0.001461,0.004796,-0.013974,-0.011973,0.02918,0.012994,0.00326,0.00114,-0.002765,0.004627,-0.00287,-0.002597,0.000123,0.018195,-0.001078
    British:HG00111,0.135449,0.133034,0.059962,0.060401,0.040623,0.021753,-0.00376,0.002538,0.008181,0,-0.008931,0.006444,-0.015461,-0.018029,0.016015,0.016441,0.007041,-0.005068,-0.002765,-0.005002,0.007237,0.009398,-0.00419,0.021449,-0.000479
    British:HG00112,0.134311,0.13405,0.058077,0.052972,0.036007,0.021196,0.005405,0.004615,-0.000409,0.00164,-0.003897,0.007793,-0.012785,-0.000963,0.015744,0.004243,-0.009127,-0.00228,0.00729,0.005002,0.001872,-0.001113,-0.001232,0.013978,0.001916
    British:HG00113,0.129758,0.139128,0.065619,0.047158,0.036622,0.012829,0.000705,0.01223,0.009817,-0.000547,-0.006333,0.008842,-0.015015,-0.010597,0.026058,0.001989,-0.019818,0.006461,0.003645,-0.002126,0.006863,0.001731,-0.004314,0.007712,0.00491
    British:HG00114,0.129758,0.137096,0.058831,0.045543,0.045855,0.018686,0.003995,0.011769,-0.000614,0.000182,-0.003085,0.012139,-0.01665,-0.013212,0.029994,-0.007823,-0.016037,-0.002027,0.004022,0.002876,0.011105,0.007296,-0.005916,0.01205,-0.004311
    British:HG00115,0.129758,0.135065,0.053174,0.041344,0.03693,0.008925,0.004465,0.004154,0.003068,0.004009,0.002273,0.013638,-0.013677,-0.013212,0.019408,0.002519,-0.003651,0.0019,-0.004022,0.008004,0.006863,-0.00272,0.000616,0.013978,0.003473
    British:HG00116,0.135449,0.137096,0.062225,0.041667,0.039084,0.015618,0.00235,0.007154,-0.000205,-0.001822,-0.001786,-0.001199,-0.003419,-0.020093,0.021715,0.003713,-0.008345,0.0019,-0.002137,0.005378,0.010107,-0.000247,-0.003081,0.01446,-0.001676
    British:HG00117,0.137726,0.133034,0.059962,0.042959,0.040931,0.019522,-0.001175,0.002308,0.001023,0.002187,-0.009419,0.007643,-0.017393,-0.009909,0.024701,0.005304,-0.008214,-0.000507,0.011187,0.010755,-0.004742,0.006059,0.00949,0.015906,0.000479
    British:HG00118,0.135449,0.132019,0.065242,0.049419,0.037545,0.014781,0.00188,0.002308,0.007158,0.00164,-0.005034,0.003297,-0.008622,-0.022708,0.02158,0.009812,-0.010952,0.000507,0.003897,0.002876,0.002121,0.008903,0.000246,0.014701,0.00467
    British:HG00119,0.133173,0.126941,0.065996,0.045543,0.042162,0.02008,-0.00141,0.011076,0.005318,0.003645,-0.007307,0.006894,-0.01888,-0.01445,0.022801,0.005436,-0.016559,0.000633,-0.000628,0.002001,0.006863,0.005193,-0.001109,0.015303,0.001317
    British:HG00120,0.134311,0.139128,0.061094,0.053941,0.041546,0.02259,0.00705,0.007846,0.011658,0.002916,-0.012342,0.007793,-0.010109,-0.015138,0.018865,0.009281,-0.002608,0.000633,0.002011,0.005378,0.005989,0.003091,-0.006409,0.017954,0.00467
    British:HG00121,0.135449,0.13405,0.063733,0.057494,0.036314,0.021753,0.00611,0.009923,-0.003477,0.000911,-0.006333,0.008093,-0.016799,-0.016102,0.028366,0.013524,0.000782,-0.002914,-0.001006,0.005378,0.009608,0.002844,-0.001725,0.018195,-0.004311
    British:HG00122,0.135449,0.128972,0.07467,0.049096,0.0437,0.015897,0.00235,0.007154,0.007567,0.009476,-0.004222,0.007343,-0.008176,-0.009221,0.021037,0.0118,-0.008866,-0.001267,-0.005656,0.005002,0.005241,0.002473,0.000739,0.019039,-0.003832
    British:HG00123,0.130897,0.131003,0.061094,0.047804,0.032006,0.01757,0.00752,0.010615,0.002454,-0.000547,-0.00682,0.01124,-0.011893,-0.012248,0.025787,-0.001989,-0.026989,0.00228,-0.001508,0.004252,0.010856,0.009645,0.00037,0.009158,-0.00491
    British:HG00124,0.134311,0.135065,0.06675,0.042636,0.04647,0.012271,-0.000235,0.004615,0.002045,0.005649,-0.006171,0.008093,-0.00773,-0.012111,0.020901,0.019358,0.00691,-0.003294,-0.001131,0.006503,-0.003369,0.005688,-0.005176,0.020846,-0.00491
    British:HG00125,0.130897,0.128972,0.069013,0.059432,0.044008,0.016455,0.00141,0.006231,-0.001023,-0.006925,-0.011367,0.007343,-0.004757,-0.007432,0.016286,0.011138,-0.01017,0.00076,0.004651,0.006753,0.003369,0.003215,-0.002218,0.01446,0.006227
    British:HG00238,0.129758,0.132019,0.056191,0.043605,0.036622,0.010598,-0.002115,0.003692,0.011249,0.011481,-0.011367,0.001649,-0.014717,-0.01679,0.023344,0.006497,0,0.000127,0.005908,0.001626,0.007487,0.00272,0.001602,0.011206,0.000599
    British:HG00240,0.133173,0.135065,0.057699,0.047804,0.039084,0.013666,0.007755,0.007846,0.003886,0.004738,-0.007307,0.001049,-0.011893,-0.017753,0.021715,0.005304,-0.01017,-0.0019,0.000377,0.002501,0.010232,0.002102,0.000616,0.00253,-0.002155
    Scottish_Argyll_Bute:HG00106,0.135449,0.132019,0.059962,0.05491,0.03693,0.022869,0.00564,0.006231,-0.005113,0.000547,-0.003573,0.010641,-0.010406,-0.012248,0.032573,-0.007558,-0.025555,0.004181,0.006913,-0.000625,0.001622,-0.000618,-0.004437,0.009519,-0.000479
    
    
    Raw
    
    British:HG00096,0.0116,0.0128,0.0174,0.0161,0.0117,0.0055,0.0001,0.0035,0.0002,0.0013,-0.0021,0.005,-0.009,-0.0106,0.0185,0.002,-0.0095,0.0019,0.0012,-0.0018,0.0032,0.0051,0.0046,0.0072,-0.0022
    British:HG00097,0.0112,0.013,0.0169,0.0156,0.0115,0.0065,0.0014,0.0014,0.0052,0.0028,-0.0046,0.0027,-0.009,-0.0038,0.0181,-0.0057,-0.018,0.0042,0.0018,-0.0012,0.0048,0.0061,0.0058,0.0203,-0.0016
    British:HG00099,0.0119,0.0134,0.0185,0.0156,0.0112,0.0063,0.0024,0.0012,0,0.0009,-0.0067,0.0027,-0.0059,-0.0082,0.0218,-0.0018,-0.0184,0.0009,0.0028,0.0019,0.006,0.0022,-0.0029,0.011,-0.0017
    British:HG00100,0.0117,0.0132,0.0157,0.0134,0.0121,0.0074,0.002,0.0018,0.0054,0.0012,-0.0046,0.0046,-0.0104,-0.0119,0.0163,0.0052,-0.0095,0.0017,0.0052,0.0054,0.0012,0.0017,-0.0005,0.0176,-0.0054
    British:HG00101,0.0116,0.0132,0.0169,0.0136,0.0137,0.0071,0.0025,0.0027,0.0003,0.0046,-0.0017,0.0018,-0.0113,-0.0025,0.0151,0.0037,-0.0111,-0.0016,0.001,-0.0002,0.0112,-0.0017,0.0003,0.0053,-0.0013
    British:HG00102,0.0118,0.0125,0.0168,0.0188,0.0134,0.0086,-0.0012,0.0051,0.0057,0.0025,-0.0077,0.0036,-0.003,-0.0156,0.0194,0.0126,-0.0075,0.0061,0.0038,0.0054,-0.0012,0.0012,-0.0004,0.0159,0.0053
    British:HG00107,0.0122,0.0127,0.0172,0.0153,0.0137,0.0075,0.0024,0.0039,0.005,-0.0005,0.0001,-0.0005,-0.0056,-0.0061,0.0135,0.005,-0.0098,-0.0045,-0.0017,0.0017,-0.0014,0.0025,0.0006,0.0064,0.003
    British:HG00108,0.0115,0.0132,0.0176,0.0124,0.0142,0.007,0.0013,0.003,0.0005,0.0002,-0.001,0.0014,-0.0051,-0.0102,0.0174,0.0024,-0.0105,0.0025,0.0028,-0.001,0.004,0.0011,0.0058,-0.0001,0.0014
    British:HG00109,0.0121,0.0127,0.0166,0.0123,0.0145,0.0065,0.002,0.0055,0.0033,0.0039,-0.0029,0.0032,-0.0134,-0.0037,0.0101,0.0017,-0.0054,-0.0013,0.001,-0.0013,0.0052,0.0045,-0.0019,0.0121,-0.001
    British:HG00110,0.0121,0.0127,0.0161,0.0163,0.0121,0.0051,0.0021,0.0032,0.0022,0.0007,-0.0009,0.0032,-0.0094,-0.0087,0.0215,0.0098,0.0025,0.0009,-0.0022,0.0037,-0.0023,-0.0021,0.0001,0.0151,-0.0009
    British:HG00111,0.0119,0.0131,0.0159,0.0187,0.0132,0.0078,-0.0016,0.0011,0.004,0,-0.0055,0.0043,-0.0104,-0.0131,0.0118,0.0124,0.0054,-0.004,-0.0022,-0.004,0.0058,0.0076,-0.0034,0.0178,-0.0004
    British:HG00112,0.0118,0.0132,0.0154,0.0164,0.0117,0.0076,0.0023,0.002,-0.0002,0.0009,-0.0024,0.0052,-0.0086,-0.0007,0.0116,0.0032,-0.007,-0.0018,0.0058,0.004,0.0015,-0.0009,-0.001,0.0116,0.0016
    British:HG00113,0.0114,0.0137,0.0174,0.0146,0.0119,0.0046,0.0003,0.0053,0.0048,-0.0003,-0.0039,0.0059,-0.0101,-0.0077,0.0192,0.0015,-0.0152,0.0051,0.0029,-0.0017,0.0055,0.0014,-0.0035,0.0064,0.0041
    British:HG00114,0.0114,0.0135,0.0156,0.0141,0.0149,0.0067,0.0017,0.0051,-0.0003,0.0001,-0.0019,0.0081,-0.0112,-0.0096,0.0221,-0.0059,-0.0123,-0.0016,0.0032,0.0023,0.0089,0.0059,-0.0048,0.01,-0.0036
    British:HG00115,0.0114,0.0133,0.0141,0.0128,0.012,0.0032,0.0019,0.0018,0.0015,0.0022,0.0014,0.0091,-0.0092,-0.0096,0.0143,0.0019,-0.0028,0.0015,-0.0032,0.0064,0.0055,-0.0022,0.0005,0.0116,0.0029
    British:HG00116,0.0119,0.0135,0.0165,0.0129,0.0127,0.0056,0.001,0.0031,-0.0001,-0.001,-0.0011,-0.0008,-0.0023,-0.0146,0.016,0.0028,-0.0064,0.0015,-0.0017,0.0043,0.0081,-0.0002,-0.0025,0.012,-0.0014
    British:HG00117,0.0121,0.0131,0.0159,0.0133,0.0133,0.007,-0.0005,0.001,0.0005,0.0012,-0.0058,0.0051,-0.0117,-0.0072,0.0182,0.004,-0.0063,-0.0004,0.0089,0.0086,-0.0038,0.0049,0.0077,0.0132,0.0004
    British:HG00118,0.0119,0.013,0.0173,0.0153,0.0122,0.0053,0.0008,0.001,0.0035,0.0009,-0.0031,0.0022,-0.0058,-0.0165,0.0159,0.0074,-0.0084,0.0004,0.0031,0.0023,0.0017,0.0072,0.0002,0.0122,0.0039
    British:HG00119,0.0117,0.0125,0.0175,0.0141,0.0137,0.0072,-0.0006,0.0048,0.0026,0.002,-0.0045,0.0046,-0.0127,-0.0105,0.0168,0.0041,-0.0127,0.0005,-0.0005,0.0016,0.0055,0.0042,-0.0009,0.0127,0.0011
    British:HG00120,0.0118,0.0137,0.0162,0.0167,0.0135,0.0081,0.003,0.0034,0.0057,0.0016,-0.0076,0.0052,-0.0068,-0.011,0.0139,0.007,-0.002,0.0005,0.0016,0.0043,0.0048,0.0025,-0.0052,0.0149,0.0039
    British:HG00121,0.0119,0.0132,0.0169,0.0178,0.0118,0.0078,0.0026,0.0043,-0.0017,0.0005,-0.0039,0.0054,-0.0113,-0.0117,0.0209,0.0102,0.0006,-0.0023,-0.0008,0.0043,0.0077,0.0023,-0.0014,0.0151,-0.0036
    British:HG00122,0.0119,0.0127,0.0198,0.0152,0.0142,0.0057,0.001,0.0031,0.0037,0.0052,-0.0026,0.0049,-0.0055,-0.0067,0.0155,0.0089,-0.0068,-0.001,-0.0045,0.004,0.0042,0.002,0.0006,0.0158,-0.0032
    British:HG00123,0.0115,0.0129,0.0162,0.0148,0.0104,0.0063,0.0032,0.0046,0.0012,-0.0003,-0.0042,0.0075,-0.008,-0.0089,0.019,-0.0015,-0.0207,0.0018,-0.0012,0.0034,0.0087,0.0078,0.0003,0.0076,-0.0041
    British:HG00124,0.0118,0.0133,0.0177,0.0132,0.0151,0.0044,-0.0001,0.002,0.001,0.0031,-0.0038,0.0054,-0.0052,-0.0088,0.0154,0.0146,0.0053,-0.0026,-0.0009,0.0052,-0.0027,0.0046,-0.0042,0.0173,-0.0041
    British:HG00125,0.0115,0.0127,0.0183,0.0184,0.0143,0.0059,0.0006,0.0027,-0.0005,-0.0038,-0.007,0.0049,-0.0032,-0.0054,0.012,0.0084,-0.0078,0.0006,0.0037,0.0054,0.0027,0.0026,-0.0018,0.012,0.0052
    British:HG00238,0.0114,0.013,0.0149,0.0135,0.0119,0.0038,-0.0009,0.0016,0.0055,0.0063,-0.007,0.0011,-0.0099,-0.0122,0.0172,0.0049,0,0.0001,0.0047,0.0013,0.006,0.0022,0.0013,0.0093,0.0005
    British:HG00240,0.0117,0.0133,0.0153,0.0148,0.0127,0.0049,0.0033,0.0034,0.0019,0.0026,-0.0045,0.0007,-0.008,-0.0129,0.016,0.004,-0.0078,-0.0015,0.0003,0.002,0.0082,0.0017,0.0005,0.0021,-0.0018
    Scottish_Argyll_Bute:HG00106,0.0119,0.013,0.0159,0.017,0.012,0.0082,0.0024,0.0027,-0.0025,0.0003,-0.0022,0.0071,-0.007,-0.0089,0.024,-0.0057,-0.0196,0.0033,0.0055,-0.0005,0.0013,-0.0005,-0.0036,0.0079,-0.0004
    what this Y DNA this samples

  5. #4
    Registered Users
    Posts
    5,662
    Sex
    Location
    Poznan, Poland
    Y-DNA (P)
    R1b-Z2552
    mtDNA (M)
    W6a

    Poland Poland Pomerania European Union Polish–LithuanianCommonwealth
    Only one Scottish_Argyll_Bute sample?

  6. #5
    Gold Class Member
    Posts
    7,826
    Sex
    Location
    Normandy
    Ethnicity
    northwesterner
    Y-DNA (P)
    R-BY3604-Z275
    mtDNA (M)
    H5a1

    Normandie Orkney Netherlands Friesland East Frisia Finland
    Quote Originally Posted by Tomenable View Post
    Only one Scottish_Argyll_Bute sample?
    The official identification on 1kG is "British in England and Scotland". I don't know where this code "Scottish_Argyll_Bute" comes from, and I would be interested to know it. I used these 1kG samples for eras for my MDS plots, under the simple code "GB". There are clearly some Scotts among them. I seem to remember that some of them show up in Busby in the Scottish sample (if I'm not dreaming, the time has passed... ).
    testP_mds_1-2.pdf
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

  7. The Following 3 Users Say Thank You to anglesqueville For This Useful Post:

     JMcB (09-14-2021),  monedula (09-17-2021),  Tomenable (09-18-2021)

  8. #6
    Gold Class Member
    Posts
    575
    Sex
    Y-DNA (P)
    R-Y33
    mtDNA (M)
    J1c2
    Y-DNA (M)
    E-Y6938
    mtDNA (P)
    G2a

    Russian Federation Russia Tatarstan Arms Russia Mordovia Timurid
    Quote Originally Posted by anglesqueville View Post
    The official identification on 1kG is "British in England and Scotland". I don't know where this code "Scottish_Argyll_Bute" comes from, and I would be interested to know it. I used these 1kG samples for eras for my MDS plots, under the simple code "GB". There are clearly some Scotts among them. I seem to remember that some of them show up in Busby in the Scottish sample (if I'm not dreaming, the time has passed... ).
    testP_mds_1-2.pdf
    The Reich Lab annotation file lists some individuals as Scottish from Argyll Bute and English from Kent and Cornwall.

    https://reichdata.hms.harvard.edu/pu...HO_public.anno

    Code:
    5697	HG00103	HG00103	LazaridisNature2014	Coriell Cell Repositories	0	..	Scottish	Argyll and Bute	Great Britain	56.04	-5.44	6	..	591549	M	..	PASS (genotyping)
    5698	HG00104	HG00104	LazaridisNature2014	Coriell Cell Repositories	0	..	Scottish	Argyll and Bute	Great Britain	56.04	-4.44	6	..	592028	F	..	PASS (genotyping)
    5699	HG00105	HG00105	LazaridisNature2014	Coriell Cell Repositories	0	..	Scottish	Argyll and Bute	Great Britain	56.04	-3.44	6	..	592632	M	..	PASS (genotyping)
    5700	HG00106	HG00106	LazaridisNature2014	Coriell Cell Repositories	0	..	Scottish	Argyll and Bute	Great Britain	56.04	-2.44	6	..	592373	F	..	PASS (genotyping)
    This seems to be based on the population labels used in Lazaridis et al. 2014; at the very least, it's the first mention I've found of what part of the UK certain 1kg samples are from.

    I've actually sent Davidski all of the British 1kg genotypes, I didn't ask him why he only processed the lone Scottish sample, but it could be that the other three overlap with ones on G25, given that quite a few of the English are included in the G25 spreadsheet.
    YDNA (P): R-Y33
    YDNA (P, maternal line): R-Y20756
    YDNA(M): E-Y6938

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  10. #7
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    England Scotland Ireland Germany Bayern Italy Two Sicilies France
    It’s interesting to see how they plot:


    255F03AF-29F5-4BCF-93C7-404C698CC702.jpeg
    Paper Trail: 42.25% English, 31.25% Scottish, 12.5% Irish, 6.25% German, 6.25% Sicilian & 1.5% French. Or: 86% British Isles, 6.25% German, 6.25% Sicilian & 1.5% French.
    LDNA(c): 86.3% British Isles (48.6% English, 37.7% Scottish & Irish), 7.8% NW Germanic, 5.9% Europe South (Aegean 3.4%, Tuscany 1.3%, Sardinia 1.1%)
    BigY 700: I1-Z140 >F2642 >Y1966 >Y3649 >A13241 >Y3647 >A13248 (circa 540 AD) >FT81015 (circa 1120 AD) >A13243 (circa 1620 AD) >FT80854 (circa 1700 AD).

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  12. #8
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    Last edited by Trelvern; 09-14-2021 at 05:04 PM.

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    My take:

    This is UMAP plot and my proposed labeling of the new samples (in front of the names of the new samples is label 'New_'):

     
    Some simple calculations, maps and plots I make for free, but for more complicated maps, plots and calculations I ask for a donation of $2 or €1.7 per map/plot via Hidden Content PayPalHidden Content account.
    Every fourth map is free. Admix decomposition is $7 or €6.

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    I've tried to isolate two distinct types of profiles for Scottish, English and Irish from the above UMAP, but I am not sure how to place them on the map:

    This is the current similarity map for firemonkey:

     
    Some simple calculations, maps and plots I make for free, but for more complicated maps, plots and calculations I ask for a donation of $2 or €1.7 per map/plot via Hidden Content PayPalHidden Content account.
    Every fourth map is free. Admix decomposition is $7 or €6.

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