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Thread: Eurogenes K9 Teal PCAs/Graphs/Dendograms

  1. #1
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    Lightbulb Eurogenes K9 Teal PCAs/Graphs/Dendograms

    I started this thread for posting the various charts & graphs that are based on Eurogenes K9 'Teal". I will be uploading various charts & plots on a regular basis. The existence of a K9 spreadsheet should be helpful in the analysis. I will also be uploading a few graphs showing members' admix similarity to some K9 reference Asian groups.

    This graph shows the admixture component distribution of the members who posted their results:


    [IMG][/IMG]

    E Asian= E Asian+ Amerindian+ Siberian
    S Asian includes the little bit of Oceanian (based on FST) some members have. It was not worth creating a separate category for Oceanian.

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  3. #2
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    I think you swapped P gill and mcninja results so double check it, i can be wrong.

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    Quote Originally Posted by kenji.aryan View Post
    I think you swapped P gill and mcninja results so double check it, i can be wrong.
    Good catch, but Gill's results are directly from McNinja's spreadsheet. McNinja's C Asian & S Asian somehow got switched, but on 2nd observation comparing McNinja's post with his spreadsheet for Gill, I noticed that Gill's & McNinja's results are the same. Does McNinja go by Gill as well?

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    The 1st graph shows the admixture similarity of the community to Brahuis, and the 2nd to Afghan Pashtuns. The Brahui and Pashtun references were formed using the average of the individuals on the K9 spreadsheet only. I will be going down the list and uploading community similarity to various Asian populations.

    I will also start working on the PCAs tomorrow.

    [IMG][/IMG]
    [IMG][/IMG]

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    Quote Originally Posted by Kurd View Post
    Good catch, but Gill's results are directly from McNinja's spreadsheet. McNinja's C Asian & S Asian somehow got switched, but on 2nd observation comparing McNinja's post with his spreadsheet for Gill, I noticed that Gill's & McNinja's results are the same. Does McNinja go by Gill as well?
    Yes on spreadsheet he is HRP0349.

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     paulgill (04-19-2015)

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    Another reason why I decided to graph similarity to K9 spreadsheet populations is that the results from the K9 Oracle using the Gaussian method are quite different from the results using the least squares method. By comparing your oracle results to the admixture similarity graphs, you can surmise which results are more accurate.

    [IMG][/IMG]
    [IMG][/IMG]

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    Paulgill and I are both Punjabi Jatt Gills, I'm usually marked as Punjabi Jatt Muslim (HRP0349) Gill/Pansota and he's Punjabi Jatt Sikh (P.G.)
    Paternal - Y-DNA: J2b2* (J-M241) Z2432+ Z2433+ Y978+ (J2b2a2b1*) (Hidden Content ) (YFull: YF02959) (FTDNA Kit B6225), mtDNA: M18a* (FTDNA Kit 329180) (YFull: YF63773)
    Maternal- Y-DNA: R1a1a1b2a1a2c2d5a* L657+ Y7+ (R-Y16494*) (FTDNA Kit 311047) (YFull: YF68408), mtDNA: Hidden Content (FTDNA Kit B6225) (YFull: YF02959) (Mother's Mother's Father: R1a1a1b2a1a2c2* Y7+ Y29+ (R-Y29*) (FTDNA Kit 329181) (YFull: YF65256))

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    https://docs.google.com/spreadsheet/...V3JoYlE#gid=54

    I don't have Paulgill on this one. Did he post his K9 result somewhere?
    Paternal - Y-DNA: J2b2* (J-M241) Z2432+ Z2433+ Y978+ (J2b2a2b1*) (Hidden Content ) (YFull: YF02959) (FTDNA Kit B6225), mtDNA: M18a* (FTDNA Kit 329180) (YFull: YF63773)
    Maternal- Y-DNA: R1a1a1b2a1a2c2d5a* L657+ Y7+ (R-Y16494*) (FTDNA Kit 311047) (YFull: YF68408), mtDNA: Hidden Content (FTDNA Kit B6225) (YFull: YF02959) (Mother's Mother's Father: R1a1a1b2a1a2c2* Y7+ Y29+ (R-Y29*) (FTDNA Kit 329181) (YFull: YF65256))

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    Quote Originally Posted by Dr_McNinja View Post
    Paulgill and I are both Punjabi Jatt Gills, I'm usually marked as Punjabi Jatt Muslim (HRP0349) Gill/Pansota and he's Punjabi Jatt Sikh (P.G.)
    Thanks for clarifying. Moving forward I will make the adjustment on the charts. On the ones I have posted so far, your results are marked PGill by mistake.

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    Quote Originally Posted by Dr_McNinja View Post
    https://docs.google.com/spreadsheet/...V3JoYlE#gid=54

    I don't have Paulgill on this one. Did he post his K9 result somewhere?
    My mistake, I assumed that "Gill" on your spreadsheet was the same as PGill

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