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Thread: Where do you plot on Interpretome PCAs?

  1. #1
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    Post Where do you plot on Interpretome PCAs?

    I was interested in assessing Interpretome's PCAs, and was also curious to see where everyone plotted around me. For those not familiar with Interpretome here are the steps you need to take:

    1- Go to Interpretome.com using either Firefox or Google Chrome. Their site does not support Internet Explorer
    2- Click on Ancestry, then click on PCA
    3- Click on upload/add genome. They support only 23andme. Make sure you upload an unzipped version of your genome. This should take a couple of seconds.
    4- Choose a resolution of 100,000 SNPs
    5- For the 1st plot choose Reference Populations, PC1/ PC2. It takes a couple of seconds to plot
    6- To zoom in, left click with your mouse, and drag it to cover the area you want to zoom into
    7- For the 2nd plot, choose HGDP World, PC3/PC4, and repeat step 6
    8- For the 3rd plot, choose Mid East/Jewish, PC1/PC2
    9- For the 4th plot, choose HGDP Asian, PC1/PC2, Detailed Regional.
    10- Take screen shots, and upload to photo sharing website such as imgur.com

    Although the 3rd and 4th plots are most relevant to W Asians and S Asians, respectively, Europeans can also give it a try.


    [IMG][/IMG]
    [IMG][/IMG]
    [IMG][/IMG]
    [IMG][/IMG]

  2. The Following 7 Users Say Thank You to Kurd For This Useful Post:

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    I wish i had 23andme results

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    I tested my friends results. Which we have similar calculator results. I cant share the PCAs without his permision but what i can say is,
    in 1st PCA, he is between West European and Middle Eastern,
    In second on he is middle in Near Eastern,
    in third PCA he is with Armenians,
    and fourth one is he is close to Kalashes

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    Reference Populations



    HGDP World



    Mid East/Jewish



    HGDP Asian

    Ancestry on paper: English, Scottish, Irish, Welsh, Croatian, Ashkenazi, Polish and Māori.

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     Anabasis (05-06-2015),  Kurd (05-06-2015),  paulgill (05-06-2015),  PureEvil (05-07-2015)

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    Last edited by MonkeyDLuffy; 05-06-2015 at 11:04 PM.

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    Quote Originally Posted by MonkeyDLuffy View Post






    It is interesting that on the References plot you are east if me but still west of the S Asian cluster, which indicates that their S Asian references are likely from central or S India. We will have a better idea when more S Asians post
    BTW, you have 2 Mid East plots and no HGDP Asian plot

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     MonkeyDLuffy (05-06-2015)

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    Quote Originally Posted by Kurd View Post
    It is interesting that on the References plot you are east if me but still west of the S Asian cluster, which indicates that their S Asian references are likely from central or S India. We will have a better idea when more S Asians post
    BTW, you have 2 Mid East plots and no HGDP Asian plot
    Yeah I just edited my post, you can see my asian plot now. Probably some kind of error with my image uploader before. The south asian population is probably south Indian or bengali, seeing there is a huge gap between me and them. If there were central Indians, they would have filled the gap.

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     Kurd (05-06-2015)

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    Quote Originally Posted by jtoml4 View Post
    Reference Populations



    HGDP World



    Mid East/Jewish



    HGDP Asian

    On the references chart you plot between Mid East and Europe which would indicate some Mid Eastern ancestry if the charts are accurate. We will have a better idea of accuracy when more Europeans Ashkenazis and W Asians post
    Last edited by Kurd; 05-06-2015 at 11:26 PM.

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    Here are my plots, I've added my brother as well and edited my marker to differentiate mine from his.





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    Quote Originally Posted by Stephen1986 View Post
    Here are my plots, I've added my brother as well and edited my marker to differentiate mine from his.




    Why are Africans clustering with Europeans and not South Asians? Huh? I'm confused
    Quoted the wrong person great, it was meant Jason ( jtom?..)

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