Results 1 to 3 of 3

Thread: Getting Y-STR results from 1000 Genomes data...

  1. #1
    Registered Users
    Posts
    2,681
    Sex
    Location
    New York
    Ethnicity
    South Asian
    Nationality
    American
    Y-DNA (P)
    J2b2-M241 (J-Y978*)
    mtDNA (M)
    M30b2a
    Y-DNA (M)
    R1a1-L657 (R-Y16494)
    mtDNA (P)
    M18a

    United States of America Canada

    Getting Y-STR results from 1000 Genomes data...

    Am I looking in the right place?

    ftp://ftp-trace.ncbi.nih.gov/1000gen.../data/HG03696/

    Should I get the BAM file from 'alignment' or 'exome_alignment'? I got the one from the latter, it was an 11GB bam file, and it resulted in 4 STR results. I'm trying the larger 20GB bam file from 'alignment' folder now. Am I in the wrong site or something?

    Also why do they seem to upload chromosomes 11 and 20 separately?
    Paternal - Y-DNA: J2b2* (J-M241) Z2432+ Z2433+ Y978+ (J2b2a2b1*) (Hidden Content ) (YFull: YF02959) (FTDNA Kit B6225), mtDNA: M18a* (FTDNA Kit 329180) (YFull: YF63773)
    Maternal- Y-DNA: R1a1a1b2a1a2c2d5a* L657+ Y7+ (R-Y16494*) (FTDNA Kit 311047) (YFull: YF68408), mtDNA: Hidden Content (FTDNA Kit B6225) (YFull: YF02959) (Mother's Mother's Father: R1a1a1b2a1a2c2* Y7+ Y29+ (R-Y29*) (FTDNA Kit 329181) (YFull: YF65256))

  2. #2
    Registered Users
    Posts
    4,238
    Sex
    Location
    Tierra de Ayllon
    Y-DNA (P)
    U152>L2>Z49>Z142>
    mtDNA (M)
    H1bt
    Y-DNA (M)
    I2a2a1b2a1b1>Y4925
    mtDNA (P)
    H37

    England Scotland Wales Germany Ireland Sweden Finns
    I would be interested to know if there is a way to get STR data from the 1000 project i.e. HG 01777.
    Y DNA line continued: Z142>Z12222>FGC12378>FGC12401>FGC12384
    37% English, 26% Scot/Ulster Scot, 14% Welsh, 14% German, 3% Ireland, 3% Nordic, 2% French/Dutch, 1% India
    Hidden Content

  3. #3
    Registered Users
    Posts
    2,681
    Sex
    Location
    New York
    Ethnicity
    South Asian
    Nationality
    American
    Y-DNA (P)
    J2b2-M241 (J-Y978*)
    mtDNA (M)
    M30b2a
    Y-DNA (M)
    R1a1-L657 (R-Y16494)
    mtDNA (P)
    M18a

    United States of America Canada
    I used the BAM analyzer kit with the bigger bam file and it worked, I managed to pull a few STRs for HG03696. It's a gigantic file and it took a while though.
    Paternal - Y-DNA: J2b2* (J-M241) Z2432+ Z2433+ Y978+ (J2b2a2b1*) (Hidden Content ) (YFull: YF02959) (FTDNA Kit B6225), mtDNA: M18a* (FTDNA Kit 329180) (YFull: YF63773)
    Maternal- Y-DNA: R1a1a1b2a1a2c2d5a* L657+ Y7+ (R-Y16494*) (FTDNA Kit 311047) (YFull: YF68408), mtDNA: Hidden Content (FTDNA Kit B6225) (YFull: YF02959) (Mother's Mother's Father: R1a1a1b2a1a2c2* Y7+ Y29+ (R-Y29*) (FTDNA Kit 329181) (YFull: YF65256))

  4. The Following User Says Thank You to Dr_McNinja For This Useful Post:

     MitchellSince1893 (05-25-2015)

Similar Threads

  1. Comparing your DNA to 1000 genomes ?
    By MattL in forum Autosomal (auDNA)
    Replies: 0
    Last Post: 12-10-2015, 06:35 AM
  2. Replies: 2
    Last Post: 09-12-2014, 06:57 PM
  3. 1000 Genomes follow-up project
    By GTC in forum Other
    Replies: 0
    Last Post: 05-10-2013, 11:39 AM
  4. Full results from the 1000 Genomes Project
    By Marmaduke in forum General
    Replies: 6
    Last Post: 11-21-2012, 04:49 AM
  5. Replies: 2
    Last Post: 10-20-2012, 10:28 PM

Posting Permissions

  • You may not post new threads
  • You may not post replies
  • You may not post attachments
  • You may not edit your posts
  •