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Thread: Gedrosia K15 Admixture Calculator

  1. #1
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    Lightbulb Gedrosia K15 Admixture Calculator

    This thread has been started in anticipation of my latest Gedrosia K15 calculator, which I will upload by next Sunday. This calculator features a large number of W and S Asian individuals from my latest merged datasets.

    The calculator's primary focus is the Indian subcontinent. Many different Indian populations from various merged datasets were used to source allele frequencies, from both transition, as well as transversion SNPs. South and West Asians may notice that their S Asian or S Indian component score is lower here, than in some other calculators. The reason is I have broken up S Asian/ S Indian into its various sub-components; Burusho, Kalash, Balochi, NE Indian Tribal, and Paniya.

    Here is a brief description of the calculator's components:

    1- SW Asian - Peaks in Saudis & Yemenite Jews
    2- SE Asian- This component is modal in the Ami tribe of Taiwan, who speak an Austronesian language
    3- E Asian - This component peaks in the Ulchi and Nivkh peoples of Russia's far east, followed by the Yukagir of E Siberia
    4- Siberian - This component modal the in the Nganasans of N Siberia, who are believed to be descendants of Paleo-Siberians. It is also high in the Yukagir of E Siberia
    5- WHG- West European Hunter Gatherer peaks in various NE European populations
    6- Early European Farmers (EEF)- Represents the expansion of farming communities from the near east into Europe during the Neolithic. It peaks in Sardinians
    7- Balochi- This component is modal in the Balochi, Brahui, and Makrani populations of Pakistan
    8- Burusho - This component peaks in the Burusho of N Pakistan
    9- Kalash - This component is modal in the isolated and drifted Kalash people of the Hindu Kush mountains of Pakistan
    10- Caucuses - This component peaks in Abkhasians, Georgians, and Adygei

    11- NE_Indian_Tribal - This component peaks in:

    a- Bhumij, who are a tribal Adivasi people living primarily in the Indian states of Assam, West Bengal, Odisha and Jharkhand. They are speakers of an Austroasiatic language.
    b- Birhor, who are a tribal Adivasi forest people, traditionally nomadic, living primarily in the Indian state of Jharkhand. They also are speakers of an Austroasiatic language.
    c- Kharia, who are a tribal Adivasi people, inhabiting Bihar, Madhya Pradesh, Odisha and West Bengal, with some in Assam and the Andaman islands. They also speak an Austroasiatic language.
    d- Gond, who are a Dravidian people of central India, spread over the states of Madhya Pradesh, Uttar Pradesh, Telangana, Andhra Pradesh and Western Odisha.

    12- Paniya - This component peaks in:

    a- Paniya, who are a scheduled Indian tribe, inhabiting primarily the state of Kerala. They speak a Dravidian language
    b- It is also high in the Kattunayakkan, who are an ancient scheduled tribe in the Indian states of Andhra Pradesh, Karnataka, Kerala and Tamil Nadu. They are one of the earliest known inhabitants of the Western Ghats, who are engaged in the collection and gathering of forest produce, mainly wild honey and wax.

    13- Onge - This component is modal to Onge, who are a scheduled Indian tribe of the Andaman Islands. They are on the brink of extinction with less than 200 surviving. They are believed to have split from the mainland Asia "Out-of-Africa" migrations around 48,000 years ago.

    13-E African - This component peaks in Somalis and the Masai
    14-W African - This component peaks in the Yoruba and Esan of W Africa
    Last edited by Kurd; 10-25-2015 at 03:06 PM.

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  3. #2
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    SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge
    Burusho 0.108












    Balochi 0.113 0.048











    Siberian 0.097 0.136 0.141










    Kalash 0.128 0.069 0.064 0.154









    Caucuses 0.125 0.055 0.039 0.152 0.069








    SW_Asian 0.128 0.067 0.05 0.156 0.081 0.045







    E_Asian 0.066 0.117 0.122 0.09 0.135 0.134 0.137






    Paniya 0.137 0.117 0.122 0.174 0.142 0.139 0.142 0.148





    E_African 0.143 0.107 0.096 0.173 0.122 0.097 0.088 0.152 0.157




    WHG 0.129 0.068 0.058 0.15 0.081 0.053 0.059 0.136 0.144 0.111



    NE_Indian_Tribal 0.089 0.073 0.066 0.128 0.087 0.086 0.091 0.1 0.094 0.112 0.094


    EEF 0.134 0.076 0.058 0.161 0.086 0.045 0.045 0.143 0.149 0.102 0.05 0.098

    Onge 0.167 0.171 0.173 0.206 0.188 0.185 0.187 0.178 0.194 0.196 0.188 0.149 0.193
    W_African 0.178 0.151 0.143 0.207 0.167 0.15 0.144 0.187 0.194 0.068 0.162 0.15 0.158 0.229

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  5. #3
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    Here are some populations averages:

    POPULATION SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge W_African
    Abkhasian 0.51% 2.55% 3.63% 0.52% 1.11% 77.49% 2.08% 0.35% 1.29% 0.16% 2.20% 1.43% 5.36% 1.17% 0.15%
    Adygei 0.91% 3.00% 2.68% 1.60% 1.25% 66.30% 1.04% 2.26% 1.42% 0.24% 11.94% 1.99% 4.32% 1.00% 0.05%
    Albanian 0.21% 1.46% 0.14% 0.28% 1.19% 24.64% 13.17% 0.41% 0.60% 0.42% 24.46% 1.26% 31.27% 0.49% 0.00%
    Altaian 18.26% 6.81% 0.79% 19.20% 1.07% 8.33% 0.37% 33.47% 0.12% 0.08% 10.14% 0.41% 0.22% 0.75% 0.00%
    Ami 99.99% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
    Armenian 0.13% 4.49% 5.27% 0.07% 0.94% 49.85% 21.80% 0.20% 1.67% 0.02% 1.21% 0.47% 13.18% 0.70% 0.00%
    Ashkenazi_Jew 0.47% 1.64% 1.79% 0.32% 0.54% 24.10% 24.67% 0.74% 1.43% 0.80% 15.13% 0.80% 26.56% 0.25% 0.75%
    Assyrian 0.00% 4.39% 8.96% 0.00% 0.00% 36.51% 33.28% 0.00% 1.34% 0.00% 0.00% 0.00% 13.84% 1.67% 0.00%
    Balkar 2.43% 5.07% 2.57% 2.82% 1.49% 60.80% 1.42% 3.20% 0.94% 0.26% 11.58% 0.91% 5.62% 0.88% 0.02%
    Balochi 0.58% 10.17% 61.78% 0.77% 1.95% 7.84% 4.37% 1.52% 1.49% 0.72% 2.08% 3.92% 1.43% 0.78% 0.59%
    BedouinA 0.36% 1.83% 1.91% 0.15% 0.90% 17.48% 48.33% 0.09% 0.58% 9.21% 1.57% 0.88% 11.74% 0.49% 4.50%
    Belarusian 0.43% 1.27% 2.12% 0.65% 1.64% 13.78% 6.74% 0.50% 0.02% 0.03% 64.88% 1.57% 5.39% 0.96% 0.04%
    Bengali 5.75% 27.90% 5.53% 1.30% 1.86% 1.84% 1.09% 2.47% 2.38% 0.00% 1.19% 45.62% 1.70% 1.29% 0.07%
    Bergamo 0.29% 2.52% 1.56% 0.13% 0.92% 18.83% 8.42% 0.16% 0.64% 0.08% 24.61% 0.13% 41.09% 0.59% 0.03%
    Bhil 0.45% 24.56% 5.43% 0.95% 0.91% 2.27% 0.90% 0.49% 3.68% 0.17% 1.40% 56.63% 0.98% 1.04% 0.15%
    Bhumij 18.62% 0.00% 0.00% 0.48% 0.34% 0.29% 0.00% 0.17% 2.49% 0.30% 1.04% 73.73% 0.00% 2.34% 0.19%
    Birhor 17.00% 0.00% 0.16% 0.51% 0.00% 0.00% 0.00% 1.08% 5.06% 0.17% 0.00% 73.74% 0.00% 2.26% 0.01%
    Brahui 0.80% 4.77% 76.52% 0.63% 2.11% 2.43% 2.17% 0.70% 1.67% 1.03% 1.00% 2.21% 2.45% 1.03% 0.48%
    Bulgarian 0.64% 0.53% 1.70% 0.34% 2.13% 23.65% 9.63% 0.45% 0.98% 0.38% 34.10% 0.99% 24.03% 0.34% 0.09%
    Burusho 5.70% 60.68% 1.32% 1.51% 2.42% 6.24% 1.92% 3.62% 2.83% 0.15% 4.01% 3.58% 4.55% 1.31% 0.15%
    Changapa 48.59% 10.71% 0.00% 0.67% 0.00% 0.00% 0.34% 33.80% 1.01% 0.22% 0.15% 2.26% 0.00% 2.24% 0.00%
    Chechen 0.75% 7.40% 4.47% 1.27% 2.06% 60.13% 1.50% 1.13% 1.49% 0.30% 15.33% 0.43% 3.19% 0.56% 0.01%
    Chenchu 4.13% 31.07% 2.15% 0.40% 0.20% 0.08% 1.44% 1.35% 1.45% 0.47% 0.08% 54.82% 0.71% 1.53% 0.12%
    Croatian 0.25% 1.01% 2.05% 0.25% 0.57% 20.30% 8.88% 0.63% 0.59% 0.09% 46.13% 0.75% 18.25% 0.25% 0.01%

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  7. #4
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    POPULATION SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge W_African
    Cypriot 0.04% 1.07% 2.78% 0.41% 1.70% 30.76% 34.32% 0.27% 0.71% 0.61% 3.33% 0.87% 22.92% 0.20% 0.02%
    Czech 0.24% 2.21% 3.21% 0.18% 1.61% 14.99% 4.21% 0.14% 0.84% 0.10% 54.08% 0.50% 17.40% 0.27% 0.00%
    Dai 90.87% 0.00% 0.00% 0.06% 0.00% 0.00% 0.00% 6.14% 0.56% 0.00% 0.00% 1.59% 0.00% 0.76% 0.00%
    English 0.14% 3.83% 2.94% 0.17% 2.13% 14.63% 0.21% 0.00% 0.32% 0.33% 46.38% 0.22% 28.19% 0.46% 0.04%
    Esan 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99%
    Estonian 0.44% 0.15% 4.25% 0.70% 1.73% 13.03% 1.78% 0.96% 1.07% 0.11% 71.93% 0.77% 2.79% 0.29% 0.00%
    Ethiopian_Jew 0.09% 0.09% 0.28% 0.08% 0.13% 0.13% 30.71% 0.00% 0.14% 58.77% 0.00% 0.00% 0.70% 0.53% 8.35%
    Finnish 0.00% 3.47% 1.57% 5.64% 1.25% 10.58% 1.19% 1.81% 0.34% 0.34% 66.60% 1.30% 5.32% 0.56% 0.03%
    French 0.13% 3.31% 3.45% 0.08% 0.90% 13.78% 2.70% 0.27% 0.72% 0.49% 40.49% 0.28% 32.92% 0.34% 0.13%
    French_South 0.00% 2.88% 1.90% 0.36% 0.66% 7.21% 1.26% 0.29% 0.75% 0.09% 33.62% 1.10% 49.31% 0.32% 0.24%
    Georgian 0.00% 1.79% 0.95% 0.11% 1.01% 79.80% 2.12% 0.29% 1.43% 0.41% 1.16% 2.71% 8.00% 0.21% 0.02%
    Georgian_Jew 0.79% 3.53% 7.19% 0.06% 2.42% 42.44% 30.87% 0.32% 0.77% 0.00% 1.42% 1.41% 8.42% 0.36% 0.00%
    Gond 12.19% 5.54% 0.45% 1.23% 1.16% 0.42% 0.46% 1.48% 6.22% 0.08% 0.16% 67.97% 0.65% 1.90% 0.09%
    Great_Andamanese 18.85% 1.50% 7.00% 1.20% 0.42% 0.06% 0.16% 4.86% 0.57% 0.00% 0.56% 25.96% 0.00% 38.84% 0.00%
    Greek 0.13% 0.55% 1.54% 0.31% 1.33% 29.19% 14.81% 0.14% 0.77% 0.22% 22.99% 1.12% 26.17% 0.62% 0.11%
    GujaratiA 0.26% 31.85% 16.69% 1.52% 4.96% 6.35% 1.21% 0.00% 0.74% 0.03% 9.55% 25.28% 1.05% 0.48% 0.03%
    GujaratiB 0.58% 34.55% 14.99% 0.42% 3.57% 4.83% 0.76% 0.41% 0.86% 0.00% 6.64% 30.97% 1.09% 0.27% 0.05%
    GujaratiC 0.00% 35.72% 10.21% 0.61% 2.29% 5.25% 0.79% 0.30% 0.82% 0.14% 3.81% 38.48% 0.15% 1.42% 0.00%
    GujaratiD 0.54% 37.43% 11.31% 0.26% 1.39% 1.26% 1.42% 0.00% 2.21% 0.20% 1.38% 42.34% 0.07% 0.05% 0.13%
    Hallkipiki 1.13% 19.62% 6.97% 0.74% 0.30% 0.00% 2.19% 1.44% 6.54% 0.00% 0.18% 59.94% 0.57% 0.39% 0.00%
    Han 79.57% 0.04% 0.00% 0.44% 0.00% 0.00% 0.00% 19.76% 0.06% 0.00% 0.00% 0.07% 0.00% 0.05% 0.00%
    Hazara 19.45% 15.86% 6.97% 6.76% 1.53% 13.45% 0.61% 22.27% 0.72% 0.04% 8.12% 1.29% 2.20% 0.65% 0.09%
    Hazara_Afghan 10.70% 21.07% 12.19% 4.92% 2.78% 16.24% 1.20% 15.79% 1.11% 0.00% 8.50% 1.65% 1.98% 1.66% 0.23%
    Hungarian 0.53% 1.40% 2.74% 0.51% 1.75% 16.93% 7.05% 0.38% 0.86% 0.10% 49.48% 0.30% 17.57% 0.34% 0.04%
    Iranian 0.96% 11.04% 16.46% 1.08% 3.14% 33.04% 19.11% 0.96% 0.60% 0.45% 2.34% 0.61% 8.12% 1.30% 0.79%
    Iranian_Jew 0.17% 6.31% 7.76% 0.16% 1.41% 36.04% 36.14% 0.00% 0.45% 0.18% 0.17% 1.00% 9.79% 0.41% 0.00%
    Iraqi_Jew 0.10% 2.12% 6.53% 0.08% 2.24% 35.92% 37.93% 0.02% 1.64% 0.43% 0.05% 0.21% 12.25% 0.43% 0.05%
    Irula 0.78% 9.97% 5.80% 0.41% 2.02% 0.53% 1.49% 2.27% 19.41% 0.00% 0.00% 55.28% 0.00% 2.02% 0.00%
    Jains 0.00% 33.70% 17.16% 0.60% 1.13% 2.61% 0.10% 0.49% 0.39% 0.13% 2.35% 39.99% 0.53% 0.81% 0.00%
    Jordanian 0.86% 3.72% 4.76% 0.25% 1.08% 21.60% 41.87% 0.27% 1.06% 4.33% 1.56% 0.55% 13.93% 0.58% 3.57%
    Kalash 0.05% 1.37% 0.55% 0.00% 96.41% 0.30% 0.00% 0.00% 0.48% 0.00% 0.21% 0.22% 0.36% 0.04% 0.00%
    Kallar 1.13% 22.76% 11.62% 0.99% 0.85% 1.49% 1.84% 0.48% 4.77% 0.00% 0.00% 53.34% 0.00% 0.73% 0.00%

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  9. #5
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    POPULATION SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge W_African
    Kamsali 2.25% 26.09% 7.06% 0.42% 0.31% 0.00% 1.19% 0.61% 3.17% 0.00% 0.00% 55.95% 0.93% 1.80% 0.22%
    Kanjar 0.60% 36.11% 5.62% 0.07% 1.22% 2.59% 1.32% 1.45% 1.40% 0.51% 3.53% 43.80% 1.07% 0.72% 0.01%
    Kashmiri_Pandit 1.33% 36.31% 9.83% 0.84% 5.74% 13.46% 0.93% 1.17% 0.84% 0.00% 4.71% 21.51% 1.44% 1.88% 0.00%
    Kattunayakkan 1.50% 2.63% 2.56% 1.00% 2.68% 1.80% 0.00% 1.80% 31.42% 0.00% 0.00% 52.72% 0.49% 1.40% 0.00%
    Kharia 23.31% 0.00% 0.00% 0.61% 0.00% 0.00% 0.00% 0.49% 4.31% 0.44% 0.04% 67.71% 0.12% 2.96% 0.01%
    Kshatriya 1.07% 32.94% 31.31% 0.51% 0.44% 2.31% 1.18% 0.61% 0.01% 0.83% 5.77% 20.58% 1.06% 1.40% 0.00%
    Kurd_C 0.52% 7.71% 22.30% 0.79% 2.63% 26.84% 25.29% 0.65% 1.35% 0.00% 0.51% 0.00% 10.93% 0.44% 0.03%
    Kurd_N 0.24% 9.16% 14.36% 0.50% 2.56% 37.06% 21.77% 0.14% 0.78% 0.45% 3.72% 0.09% 8.41% 0.74% 0.00%
    Kurd_SE 3.22% 22.65% 33.96% 5.02% 5.38% 7.58% 6.95% 2.08% 2.03% 0.00% 5.61% 2.54% 0.00% 0.75% 2.22%
    Kurumba 0.63% 18.55% 18.63% 1.19% 1.59% 2.53% 0.00% 0.17% 4.30% 0.06% 0.00% 51.69% 0.00% 0.66% 0.00%
    Kyrgyz 20.35% 9.90% 1.36% 12.20% 1.00% 10.02% 0.09% 32.88% 0.20% 0.05% 9.72% 0.07% 1.71% 0.45% 0.00%
    LBK_EN 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99% 0.00% 0.00%
    Lebanese 0.49% 3.83% 4.48% 0.97% 2.51% 25.15% 38.19% 0.18% 0.81% 3.50% 1.76% 0.07% 15.69% 0.53% 1.84%
    Lithuanian 0.51% 1.02% 2.85% 0.16% 2.57% 11.30% 3.71% 0.57% 0.40% 0.00% 73.49% 0.44% 2.68% 0.27% 0.04%
    Loschbour 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 98.13% 0.00% 0.00% 1.85% 0.00%
    Luhya 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 15.60% 0.00% 0.00% 0.00% 0.02% 84.37%
    Madiga 0.49% 25.83% 2.66% 0.99% 0.37% 0.00% 0.45% 0.88% 3.73% 1.01% 0.11% 60.95% 0.19% 1.98% 0.36%
    Makrani 0.65% 8.80% 60.44% 0.52% 2.32% 8.60% 6.98% 0.32% 1.59% 0.87% 0.58% 2.62% 2.52% 0.57% 2.62%
    Mala 0.15% 22.25% 2.70% 0.43% 2.13% 0.96% 0.86% 1.75% 4.34% 0.06% 0.14% 62.77% 0.91% 0.54% 0.00%
    Malli 1.00% 28.42% 11.71% 1.25% 3.20% 1.93% 2.61% 0.87% 1.79% 0.00% 0.00% 43.92% 1.26% 1.40% 0.66%
    Masai 0.00% 0.00% 0.05% 0.00% 0.33% 0.00% 0.00% 0.00% 0.34% 69.28% 0.00% 0.00% 0.00% 0.00% 30.00%
    Meghawal 0.10% 32.64% 12.31% 0.47% 2.60% 5.36% 1.42% 0.92% 0.61% 0.50% 3.36% 36.60% 1.16% 1.82% 0.13%
    Mongola 52.76% 1.72% 0.67% 5.39% 0.27% 1.10% 0.44% 35.78% 0.00% 0.00% 1.08% 0.00% 0.38% 0.41% 0.00%
    Mordovian 1.04% 3.44% 2.41% 3.94% 1.94% 16.38% 4.14% 1.80% 0.86% 0.07% 61.02% 0.61% 1.68% 0.67% 0.00%
    Nganasan 0.00% 0.00% 0.00% 99.98% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
    Nihali 8.29% 10.38% 0.54% 0.00% 0.32% 0.00% 0.80% 1.17% 4.79% 0.73% 1.58% 69.46% 0.00% 1.94% 0.00%
    Nivkh 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
    Last edited by Kurd; 10-25-2015 at 04:31 PM.

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  11. #6
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    POPULATION SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge W_African
    Norwegian 0.05% 5.88% 4.27% 0.19% 1.11% 12.04% 0.91% 0.31% 0.67% 0.08% 53.16% 0.02% 21.04% 0.27% 0.00%
    Onge 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99% 0.00%
    Palestinian 0.17% 3.54% 3.14% 0.40% 0.77% 17.71% 51.64% 0.19% 0.65% 3.06% 1.63% 0.39% 12.45% 0.50% 3.76%
    Paniyas 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00%
    Pashtun_Afghan 3.26% 26.50% 20.01% 2.39% 3.65% 19.61% 3.45% 2.49% 2.58% 0.20% 10.80% 2.37% 1.07% 1.54% 0.09%
    Pathan 0.63% 33.77% 21.14% 0.78% 3.38% 12.06% 2.38% 1.32% 1.61% 0.01% 8.54% 11.41% 1.90% 1.02% 0.05%
    Piramalai 0.78% 22.58% 14.07% 1.25% 1.44% 0.67% 0.61% 0.59% 3.76% 0.18% 0.00% 53.56% 0.02% 0.35% 0.17%
    Punjabi 1.03% 29.37% 13.59% 1.15% 2.65% 6.50% 0.36% 0.23% 1.98% 0.03% 3.99% 35.95% 2.39% 0.79% 0.01%
    Russian 0.86% 2.01% 3.82% 4.72% 1.74% 14.05% 2.83% 2.22% 0.53% 0.09% 63.25% 0.75% 2.49% 0.58% 0.07%
    Sardinian 0.04% 1.50% 1.46% 0.20% 0.65% 0.80% 1.23% 0.12% 0.64% 0.16% 3.03% 0.30% 89.31% 0.50% 0.07%
    Saudi 0.16% 1.95% 0.83% 0.20% 0.59% 7.59% 78.92% 0.11% 0.84% 1.96% 0.43% 0.72% 4.23% 0.52% 0.95%
    Sherpa 42.27% 9.43% 1.95% 0.10% 0.02% 0.09% 0.77% 29.88% 4.31% 0.00% 0.64% 8.62% 0.13% 1.79% 0.00%
    Sicilian 0.25% 1.18% 1.72% 0.19% 0.90% 25.52% 20.09% 0.23% 1.28% 0.96% 15.87% 1.02% 29.72% 0.42% 0.65%
    Siddi 0.93% 13.01% 0.86% 0.19% 0.27% 0.74% 1.06% 0.78% 1.46% 0.54% 0.54% 10.71% 1.88% 0.82% 66.21%
    Sindhi 0.64% 28.67% 28.07% 0.52% 2.85% 8.65% 1.98% 0.62% 1.33% 0.39% 4.54% 19.57% 1.44% 0.64% 0.12%
    Somali 0.00% 0.00% 0.22% 0.00% 0.02% 0.22% 6.24% 0.00% 0.02% 89.97% 0.11% 0.10% 0.23% 0.00% 2.86%
    Spanish 0.34% 1.36% 3.03% 0.19% 0.78% 11.42% 7.10% 0.30% 0.71% 1.29% 30.64% 0.35% 41.43% 0.41% 0.67%
    Stuttgart 0.00% 0.00% 0.00% 0.00% 0.00% 9.10% 14.82% 0.00% 0.00% 0.00% 1.82% 0.00% 73.69% 0.56% 0.00%
    Subba 55.87% 2.04% 0.00% 1.44% 0.00% 0.00% 0.00% 31.63% 3.77% 0.00% 0.00% 4.37% 0.00% 0.87% 0.00%
    Syrian 0.45% 4.70% 6.53% 0.53% 1.01% 20.29% 44.22% 0.54% 0.46% 1.94% 2.59% 1.27% 11.54% 0.32% 3.63%
    Tajik 5.67% 20.62% 14.47% 3.30% 3.92% 22.65% 3.61% 5.92% 1.13% 0.23% 14.16% 0.91% 2.54% 0.76% 0.11%
    Tajik_Afghan 7.44% 18.72% 13.08% 3.21% 3.49% 23.80% 1.84% 9.17% 2.94% 0.34% 7.92% 3.20% 3.92% 0.94% 0.00%
    Tajik_Pomiri 2.19% 28.82% 10.59% 1.02% 6.39% 21.77% 1.38% 2.78% 1.14% 0.25% 19.32% 1.25% 1.85% 1.17% 0.07%

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  13. #7
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    Does creating creating ADMIXTURE calculators require a lot of processing power?

  14. #8
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    Quote Originally Posted by ZephyrousMandaru View Post
    Does creating creating ADMIXTURE calculators require a lot of processing power?
    It definitely helps alot. Converting genomes to Plink, merging various datasets, solving problems created by the merges, such as flipped markers, or finding the common denominator SNPs from the various datasets takes quite some time. Later, I usually end up doing about a dozen to two dozen runs in Admixture, to add individuals or populations, and remove problem ones, and to find a good number of ancestral populations for the calculator's intended goal. Inspite the latest computer processors, and using all cores on the processor, each run usually takes hours. Proficiency in Linux, Plink, and ADMIXTURE, and sometimes Reichlab's ADMIXTOOLS, are also necessary.
    Last edited by Kurd; 10-25-2015 at 05:36 PM.

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  16. #9
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    POPULATION SE_Asian Burusho Balochi Siberian Kalash Caucuses SW_Asian E_Asian Paniya E_African WHG NE_Indian_Tribal EEF Onge W_African
    Tamil_Brahmin 0.59% 30.04% 16.20% 0.48% 1.26% 4.98% 1.68% 1.22% 3.87% 0.00% 3.29% 35.41% 0.42% 0.56% 0.00%
    Thai 72.55% 0.00% 2.73% 0.37% 0.28% 0.23% 1.09% 7.58% 0.51% 0.14% 0.42% 11.63% 0.18% 2.27% 0.00%
    Tharu 4.04% 26.20% 3.52% 0.98% 3.37% 2.13% 1.34% 0.80% 2.89% 0.43% 2.96% 47.48% 1.01% 2.47% 0.41%
    Tibet-refugees 53.67% 5.21% 0.00% 1.61% 0.03% 0.00% 0.00% 34.57% 2.99% 0.00% 0.16% 0.01% 0.00% 1.73% 0.00%
    Turkish 1.92% 4.62% 4.55% 2.33% 2.03% 35.88% 17.11% 3.72% 1.09% 0.37% 8.91% 0.98% 15.56% 0.76% 0.18%
    Turkmen 8.23% 12.76% 11.36% 5.43% 1.02% 22.76% 8.38% 11.96% 0.79% 0.43% 10.60% 0.86% 4.58% 0.72% 0.12%
    Turkmen_Afghan 7.98% 10.37% 11.09% 8.06% 2.37% 21.15% 6.06% 15.45% 0.36% 0.05% 14.31% 1.16% 0.64% 0.80% 0.16%
    Ukrainian 0.05% 1.79% 2.51% 0.86% 1.33% 18.13% 5.38% 0.32% 0.19% 0.03% 59.40% 1.33% 7.85% 0.76% 0.08%
    Ulchi 3.67% 0.00% 0.00% 9.96% 0.02% 0.00% 0.00% 86.28% 0.01% 0.00% 0.00% 0.00% 0.00% 0.06% 0.00%
    UP_Brahmin 0.24% 35.22% 7.20% 0.81% 4.48% 5.10% 1.32% 0.58% 0.94% 0.00% 9.41% 31.97% 1.92% 0.75% 0.06%
    UP_Caste 0.93% 33.81% 2.88% 0.59% 2.43% 1.07% 1.80% 1.44% 2.13% 0.00% 2.16% 49.03% 1.15% 0.54% 0.03%
    UP_Chamar 0.66% 29.27% 1.10% 0.53% 0.68% 1.95% 0.55% 1.66% 1.85% 0.04% 1.85% 58.34% 0.44% 1.08% 0.00%
    UP_Kol 1.86% 30.36% 7.68% 0.53% 2.16% 2.31% 0.76% 1.83% 1.23% 0.14% 3.28% 46.22% 0.86% 0.78% 0.00%
    UP_Muslim 1.35% 34.53% 4.85% 1.08% 1.32% 5.41% 1.56% 0.69% 1.83% 0.00% 1.26% 43.76% 1.49% 0.86% 0.00%
    Uzbek 11.85% 13.26% 7.00% 8.06% 0.62% 17.57% 2.53% 17.57% 0.73% 0.73% 13.08% 1.40% 4.01% 1.38% 0.22%
    Uzbek_Afghan 7.70% 15.40% 20.71% 1.89% 3.09% 17.82% 4.18% 9.44% 1.44% 0.08% 10.18% 3.81% 3.45% 0.73% 0.09%
    Vaish 0.09% 33.31% 8.77% 0.54% 3.92% 5.59% 1.82% 0.47% 1.80% 0.48% 7.38% 33.71% 0.47% 1.54% 0.10%
    Velama 0.40% 30.09% 13.86% 0.70% 0.86% 1.11% 1.74% 0.29% 2.40% 0.08% 0.31% 47.01% 0.17% 0.98% 0.00%
    Yemen 0.18% 4.05% 4.84% 0.85% 0.69% 8.54% 55.24% 0.40% 0.60% 8.52% 0.88% 1.05% 4.07% 0.77% 9.33%
    Yemenite_Jew 0.05% 0.71% 1.76% 0.13% 0.97% 4.55% 84.66% 0.52% 0.37% 3.47% 0.00% 0.21% 1.73% 0.63% 0.24%
    Yoruba 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 0.00% 99.99%
    Yukagir 0.76% 1.84% 0.78% 43.47% 0.35% 1.78% 0.61% 38.86% 0.34% 0.00% 9.84% 0.22% 0.95% 0.18% 0.02%

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  18. #10
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    Cuba Vietnam
    Caucasia component seems very basal to every other euroasian components with low fst values. Lowest in Balochi,(0,039) then SW Asia and EEF (0,045). Even WHG have low fst with Caucasia (0,055) if we compore to others. What we shall understand by looking fst? Those components derived from each other or Caucasian component migrated into the places where X component dominanted? I mean does it mean related with evolution or migration?

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