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Thread: Full Y Chromosome Sequencing: Phase III Pilot

  1. #2011
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    Another point in regard to that paper is that the existing 10x Chromium software pipeline (i.e. Long Ranger) misses these structual variants. So, the existing manufacturer's software (10x Genomics) does not get all of the useful data from their own results.

    Using our approach, we identified a series of rearrangements that included multiple SV elements not detected with the 10X Long Ranger SV caller.

  2. #2012
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    " https://doi.org/10.6084/m9.
    figshare.7358480.v1. "

    Interesting, potentially very interesting to me. I looked at it. At first glance, about an hour's work,
    it appears that the regions of specific interest to me is just plain missing in their de novo assembly. I look for numerous
    50-100 base long sequences and they were not there. Their nanopore-hg38 correspondence plot does
    look reasonable on the large compared to what I got, with lots of inversions. Also, of course, I was comparing a Scot (myself)
    with a Korean, and perhaps all A0 men are just different from Scots and Koreans (haplogroups R1a and D (or maybe C)).
    This region is also missing in the Ashkenazy de-novo Pacbio sequence the paper mentions. They mention difficulties in satellites,
    which this is.

  3. The Following User Says Thank You to dtvmcdonald For This Useful Post:

     MacUalraig (01-09-2019)

  4. #2013
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    As I mentioned in another thread, there now is an option for a PacBio long read test, at $9300.

  5. #2014
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    Periodic update:

    We have a group group for discussions of consumer genetics and science in general:

    https://groups.google.com/forum/?hl=...al-discussions

  6. The Following 2 Users Say Thank You to FGC Corp For This Useful Post:

     JMcB (12-31-2019),  MacUalraig (12-17-2019)

  7. #2015
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    Recent feedback:
    "From FGC Y Elite results we found a new twig under R1a-YP1363 (BY154594) shared with a Portuguese medieval cousin."

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     JMcB (12-31-2019)

  9. #2016
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    We have secured a new partner.

  10. The Following 2 Users Say Thank You to FGC Corp For This Useful Post:

     JMcB (07-18-2020),  MacUalraig (07-08-2020)

  11. #2017
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    Batches 910045, 910048, and 910038 have been sequenced.

  12. The Following 2 Users Say Thank You to FGC Corp For This Useful Post:

     MacUalraig (07-08-2020),  Robert1 (07-18-2020)

  13. #2018
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    Batch 910039, sequencing underway

  14. The Following User Says Thank You to FGC Corp For This Useful Post:

     Robert1 (07-18-2020)

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