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Thread: List of ancient samples on GEDmatch

  1. #391
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    Quote Originally Posted by Leper View Post
    Eurasian samples don't work well with K36, it is too much Euro-centered. Oracle results are totally off. You can try Euro K13, MDLP K23b, PuntDNAl K12, Dodecad K12b. They give lot better results.
    Do you mean K15 perhaps, because K36 doesn't have oracles, does it?

  2. #392
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    Quote Originally Posted by visigoth View Post
    One more try - can anyone help uploading sample I2371 from Lipson et al. 2017 - to Gedmatch?

    I have the link to the .bam file:
    ftp.sra.ebi.ac.uk/vol1/run/ERR218/ERR2181060/I2371.1240k.bam
    ftp.sra.ebi.ac.uk/vol1/run/ERR218/ERR2181060/I2371.1240k.bam.bai

    Thank you very much!
    I uploaded two research kits to Gedmatch. First one was created with a modified extract23 script and the kit is GD5158961.
    The second one was created with my updated BAM Analysis Kit and the kit is JF9417018. I have just uploaded the kits so only one-to-one matching is available at the time of posting this message.
    Last edited by teepean47; 03-30-2019 at 06:11 AM.

  3. #393
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    Someone provide me with the ged match kit numb of the Roman gladiator sample which was suggested as egyptian ethnically if excists please ! Thanks in advance

  4. #394
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    E-BY63615 (E-M84-B)
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    U2e1a1/H13a2c1

    Palestine Lebanon United Kingdom Ireland Germany Israel
    Have the Canaanite kits been deleted from GEDmatch? I wanted to compare them to my father.....

    By the way, I compared some of the Neolithic Irish samples to my mother and sure enough she shared around 30cM when I lowered the threshold.
    SHLAMA ܫܠܡܐ

    mother's mtdna: U2e1a1
    mother's paternal grandmother's mtdna: U5b1b1
    paternal grandmother's mtdna: H13a2c1
    father's ydna: E-BY63615

  5. #395
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    Quote Originally Posted by The Saite View Post
    Someone provide me with the ged match kit numb of the Roman gladiator sample which was suggested as egyptian ethnically if excists please ! Thanks in advance
    T897383
    It's halfway between copts and Samaritans. It could very well be Egyptian, Amorite, Nabatean, and less likely a Jew...to early to judge.


    Quote Originally Posted by FaerieQueene View Post
    Have the Canaanite kits been deleted from GEDmatch? I wanted to compare them to my father.....

    By the way, I compared some of the Neolithic Irish samples to my mother and sure enough she shared around 30cM when I lowered the threshold.
    Sidon

    ERS1790730 - Z967414
    ERS1790733 - Z227846
    ERS1790729 - Z005595
    ERS1790732 - Z647344


    Jordan (Canaanite/Ammorite)

    Kit Number: M632231
    Name: I1707_Ain-Ghazal

    Kit Number: M760471
    Name: I1727_Ain-Ghazal

    Kit Number: M574673
    Name: I1414_Ain-Ghazal

    Kit Number: M380900
    Name: I1415_Ain-Ghazal
    q
    Kit Number: M814796
    Name: I1710_Ghazal

  6. The Following 6 Users Say Thank You to Iseid0441 For This Useful Post:

     Erikl86 (04-01-2019),  hartaisarlag (04-01-2019),  jonahst (04-01-2019),  Rafe (04-01-2019),  Shamayim (04-01-2019),  sprfls (04-01-2019)

  7. #396
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    So much Thanks man
    Do you also know any informations about the new high coveraged egyptian mummy samples kits (the one which were uploaded with 5400 SNP not the old 3400) ?
    It's been talked about these new kits in fourmbiodeversty here :

    http://www.forumbiodiversity.com/showthread.php?t=48338

    But the samples they are talking about is no longer existing in Gedmatch .. these samples interestingly have NO sub-Sahran or northeast African Somali admix like the old one

  8. #397
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    HV0e

    European Union Slovakia Prussia Austrian Empire
    Hello
    is anyone able to help upload or indicate where to find the TOLLENSEE GedMatch Kits? Working ones?

  9. #398
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    United Kingdom Italy
    Quote Originally Posted by Tomenable View Post
    I've uploaded I3875 Southern French Beaker to GEDmatch Genesis:

    https://umap.openstreetmap.fr/en/map...44.3835/6.8868

    Kit number - MC3097516

    Admix Results (sorted):

    # Population Percent
    1 North_Sea 36.03
    2 Atlantic 26.16
    3 West_Med 14.62
    4 Eastern_Euro 10.12
    5 Baltic 9.6
    6 West_Asian 3.44
    7 Oceanian 0.03

    Single Population Sharing:

    # Population (source) Distance
    1 Southwest_English 4.69
    2 Southeast_English 6.74
    3 South_Dutch 7.41
    4 North_Dutch 7.81
    5 West_German 7.89
    6 Orcadian 8
    7 West_Scottish 8.32
    8 Irish 8.33
    9 Danish 8.37
    10 North_German 9.26
    11 Norwegian 9.26
    12 French 9.86
    13 West_Norwegian 9.96
    14 Swedish 10.93
    15 East_German 12.82
    16 North_Swedish 13.11
    17 Spanish_Galicia 16.64
    18 Spanish_Cataluna 17.05
    19 Southwest_Finnish 17.48
    20 Hungarian 17.7

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 67% West_Norwegian + 33% Spanish_Cantabria @ 4.01
    2 68.1% West_Norwegian + 31.9% Southwest_French @ 4.28
    3 83% West_Norwegian + 17% Sardinian @ 4.34
    4 96.6% Southwest_English + 3.4% Sardinian @ 4.43
    5 69.5% Norwegian + 30.5% Spanish_Cantabria @ 4.55
    6 97.4% Southwest_English + 2.6% Chuvash @ 4.56
    7 95.7% Southwest_English + 4.3% Ukrainian @ 4.57
    8 97.8% Southwest_English + 2.2% Mari @ 4.57
    9 92.2% Southwest_English + 7.8% East_German @ 4.58
    10 97.1% Southwest_English + 2.9% Erzya @ 4.58
    11 86.8% Southwest_English + 13.2% West_German @ 4.59
    12 96% Southwest_English + 4% Moldavian @ 4.6
    13 96.3% Southwest_English + 3.7% Ukrainian_Lviv @ 4.61
    14 97.2% Southwest_English + 2.8% Kargopol_Russian @ 4.61
    15 96.7% Southwest_English + 3.3% East_Finnish @ 4.62
    16 95.2% Southwest_English + 4.8% Spanish_Galicia @ 4.62
    17 91.4% Southwest_English + 8.6% Norwegian @ 4.63
    18 97.1% Southwest_English + 2.9% South_Polish @ 4.64
    19 94.7% Southwest_English + 5.3% North_Swedish @ 4.64
    20 96.4% Southwest_English + 3.6% Hungarian @ 4.65

    Eurogenes K36:

    108127 SNPs used in this evaluation

    Population
    Amerindian -
    Arabian -
    Armenian -
    Basque 1.20 Pct
    Central_African -
    Central_Euro 5.26 Pct
    East_African -
    East_Asian -
    East_Balkan 1.67 Pct
    East_Central_Asian -
    East_Central_Euro 9.58 Pct
    East_Med -
    Eastern_Euro 3.19 Pct
    Fennoscandian 4.13 Pct
    French 7.96 Pct
    Iberian 21.38 Pct
    Indo-Chinese -
    Italian 6.21 Pct
    Malayan -
    Near_Eastern -
    North_African -
    North_Atlantic 18.66 Pct
    North_Caucasian -
    North_Sea 17.02 Pct
    Northeast_African -
    Oceanian -
    Omotic -
    Pygmy -
    Siberian -
    South_Asian -
    South_Central_Asian -
    South_Chinese -
    Volga-Ural -
    West_African -
    West_Caucasian -
    West_Med 3.74 Pct

    Similarity Map:



    Interesting how northern-shifted he was compared to modern South French.
    Any chance of doing something similar for a North Italian Bell Beaker example with steppe ancestry?

  10. The Following 2 Users Say Thank You to Cascio For This Useful Post:

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  11. #399
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    Finland
    Anyone had luck with processing Phoenician samples from Sardinia or Ibiza - the quality of SNPs is pretty dreadful.

  12. #400
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    Couls someone upload the Bavaria STR_300 sample?

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