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Thread: List of ancient samples on GEDmatch

  1. #271
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    Can anyone do the Hajji Firuz samples from the new South-Central Asia paper?

  2. #272
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    J2a-M319

    Is there a website where I can download the Mycenaean genomes and upload them myself?

  3. #273
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    Quote Originally Posted by Helves View Post
    Anyone can upload the Caananite samples to Gedmatch?

    ERS1790733
    http://www.open-genomes.org/genomes/...0733-1240k.zip
    SNPs read: 656835 percent covered: 54.81%

    ERS1790729:
    http://www.open-genomes.org/genomes/...0729-1240k.zip
    SNPs read: 321718 percent covered: 26.84%

    ERS1790730:
    http://www.open-genomes.org/genomes/...0730-1240k.zip
    SNPs read: 703319 percent covered: 58.69%

    ERS1790731:
    http://www.open-genomes.org/genomes/...0731-1240k.zip
    SNPs read: 874175 percent covered: 72.94%

    ERS1790732:
    http://www.open-genomes.org/genomes/...0732-1240k.zip
    SNPs read: 810488 percent covered: 67.63%
    Did you upload these? I uploaded one to Genesis (YT4496011) but it said it was a duplicate, so I assume you or someone else uploaded them all already?

  4. #274
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    Quote Originally Posted by jonahst View Post
    Did you upload these? I uploaded one to Genesis (YT4496011) but it said it was a duplicate, so I assume you or someone else uploaded them all already?
    Yeah I did on Gedmatch.

    Z115748
    Z290183
    Z404217
    Z750438

  5. The Following 4 Users Say Thank You to Helves For This Useful Post:

     jonahst (05-04-2018),  kingjohn (05-14-2018),  Onur Dincer (05-04-2018),  Principe (05-26-2018)

  6. #275
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    Quote Originally Posted by Helves View Post
    Yeah I did on Gedmatch.

    Z115748
    Z290183
    Z404217
    Z750438
    Getting some very interesting results. Do you know what time period these are from?

  7. #276
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    Quote Originally Posted by jonahst View Post
    Getting some very interesting results. Do you know what time period these are from?
    I think they were from 1500-2000 BC

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     jonahst (05-05-2018),  kingjohn (05-14-2018)

  9. #277
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    Quote Originally Posted by Helves View Post
    Yeah I did on Gedmatch.

    Z115748
    Z290183
    Z404217
    Z750438
    PCA with modern West-Asians in K36




    Canaan4

    "distance%=5.9044"

    Samaritan,73.2
    Cyprus,11
    Lebanon_Christian,10.6
    Lebanon_Muslim,1.4
    Iraqi_Jew,1.2
    GR_Dodecanese,0.4
    Syrian_Jew,0.4
    Armenian_Jew,0.2
    German_Ashkenazy,0.2
    GR_Pontus,0.2
    IQ_Mandean,0.2
    IT_Calabria,0.2
    Jordan,0.2
    Lazes,0.2
    Palestina,0.2
    Sicily_Katania,0.2



    Canaan1

    "distance%=7.531"

    Samaritan,61.8
    Lebanon_Christian,18
    Druzes,6
    Saudi_Arabia,5.2
    Yemen_Jew,4.4
    Yemen_North,2.4
    Bedouin,0.6
    Copts_Egypt,0.4
    Iraqi_Jew,0.4
    Copts_Sudan,0.2
    Cyprus,0.2
    Iranian_Jew,0.2
    Jordan,0.2
    Last edited by lukaszM; 05-08-2018 at 08:00 AM.

  10. The Following 5 Users Say Thank You to lukaszM For This Useful Post:

     Eihwaz (05-08-2018),  Helves (05-08-2018),  jonahst (05-08-2018),  kingjohn (05-14-2018),  palamede (05-09-2018)

  11. #278
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    Quote Originally Posted by lukaszM View Post
    Yes, thanks for reminder. This time not from bams, but from PLINK dataset.
    Hi - could you please convert/add to Gedmatch - sample I2371 from Lipson et al. 2017?

    It is the 75th sample in the Lipson 2017 dataset at Reich lab.


    Thank you very much!

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     kingjohn (05-14-2018)

  13. #279
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    this is native to the region :

    Admix Z750438 Results (sorted):

    # Population Percent
    1 East_Med 47.46
    2 West_Asian 19.02
    3 West_Med 16.28
    4 Red_Sea 15.31
    5 North_Atlantic 1.94 low north atlantic no baltic a true cannaite


    Finished reading population data. 204 populations found.
    13 components mode.

    --------------------------------

    Least-squares method.

    Using 1 population approximation: closeset moderns are samaritan and lebanese christians you cant get more native than this
    1 Samaritan @ 3.607750
    2 Lebanese_Christian @ 3.763468

    3 Palestinian @ 9.203259
    4 Lebanese_Druze @ 9.393316
    5 Lebanese_Muslim @ 11.111782
    6 Cyprian @ 11.383355
    7 Jordanian @ 11.450918
    8 Syrian @ 11.718655
    9 Bedouin @ 15.045171
    10 Kurdish_Jewish @ 15.379364
    11 Tunisian_Jewish @ 15.989378
    12 Iranian_Jewish @ 16.350662
    13 Libyan_Jewish @ 16.586199
    14 Assyrian @ 18.548874
    15 Sephardic_Jewish @ 19.863358
    16 Egyptian @ 20.003662
    17 Algerian_Jewish @ 20.521763
    18 Italian_Jewish @ 20.915220
    19 Yemenite_Jewish @ 22.616922
    20 Georgian_Jewish @ 22.660940

    Using 2 populations approximation:
    1 50% Lebanese_Christian +50% Samaritan @ 3.164467


    Using 3 populations approximation:
    1 50% Lebanese_Christian +25% Samaritan +25% Samaritan @ 3.164467


    Using 4 populations approximation:
    ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++
    1 Lebanese_Christian + Lebanese_Christian + Samaritan + Samaritan @ 3.164467
    2 Lebanese_Christian + Samaritan + Samaritan + Samaritan @ 3.250850

    3 Lebanese_Christian + Lebanese_Christian + Lebanese_Christian + Samaritan @ 3.341604
    4 Samaritan + Samaritan + Samaritan + Samaritan @ 3.607750
    5 Lebanese_Christian + Lebanese_Christian + Lebanese_Christian + Lebanese_Christian @ 3.763468

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  15. #280
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    Is the Turkmenistan_IA sample from Damgaard et al available? I'd like to take a look at it.

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