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Thread: R2 haplogroup ??

  1. #1
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    R2 haplogroup ??

    My mtdna came as R2
    Its just mtdna plus
    Not full sequence

    Any information about it?

    I dont have any match at all

    Does upgrading gives any advantages or will show matches ..

    Thank you

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  3. #2
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    Ayyubid Dynasty Zand Dynasty Ararat Republic Mahabad Republic Kurdistan Rojavaya Kurdistane
    Could be R2a, R2c by more detailed testing

    http://www.ianlogan.co.uk/sequences_..._sequences.htm
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

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  5. #3
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    There are already some samples from south arabia .. so it could be as you said

    thank you

  6. #4
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    I upgraded my mtdna to full sequence
    But the result is the same R2
    No match .. no ancestral region
    And in one mutation there is Y ( not TAGC)
    What is this .. DNA base
    I cannot enter this in mitosearch

  7. #5
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    Have your also tried James lick mtDNA tool? Just google it and you will see it easy enough.. It could very well be that you are only R2, there are many who are as an example just H...But I suspect as more people from your ancestral region get tested you might eventually be assigned to a sub-clade of R2 as they update the Pholy tree..

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  9. #6
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    Quote Originally Posted by evon View Post
    Have your also tried James lick mtDNA tool? Just google it and you will see it easy enough.. It could very well be that you are only R2, there are many who are as an example just H...But I suspect as more people from your ancestral region get tested you might eventually be assigned to a sub-clade of R2 as they update the Pholy tree..


    Thank you very much
    Here is my result using this tool

    Markers found (shown as differences to rCRS):

    HVR2: 73G 146C 152C 263G (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C
    CR: 750G 1438G 2706G 4216C 7028T 7657C 8473C 8860G 8994A 9861C 9932A 10685A 11719A 12654G 12793C 13500C 14185G 14305A 14766T 15326G
    HVR1: 16071T 16185T 16286Y 16320T 16321T (16519C)

    Best mtDNA Haplogroup Matches:

    1) R2c

    Defining Markers for haplogroup R2c:
    HVR2: 73G 146C 152C 263G 573.1C
    CR: 750G 1438G 2706G 4216C 7028T 7657C 8473C 8860G 8994A 9861C 9932A 10685A 11719A 12654G 12793C 13500C 14185G 14305A 14766T 15326G
    HVR1: 16071T 16320T
    Marker path from rCRS to haplogroup R2c (plus extra markers):
    H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 2706G 7028T ⇨ HV ⇨ 14766T ⇨ R0 ⇨ 73G 11719A ⇨ R ⇨ 4216C ⇨ R2'JT ⇨ 152C 4769A 7657C 8473C 9932A 10685A 12654G 14305A 16071T ⇨ R2 ⇨ 13500C ⇨ R2(T13500C) ⇨ 146C 573.1C 8994A 9861C 12793C 14185G 16320T ⇨ R2c ⇨ (309.1C) (315.1C) 573.2C 573.3C 573.4C 573.5C 16185T 16286Y 16321T (16519C)

    Good Match! Your results also had extra markers for this haplogroup:
    Matches(28): 73G 146C 152C 263G 573.1C 750G 1438G 2706G 4216C 4769A 7028T 7657C 8473C 8860G 8994A 9861C 9932A 10685A 11719A 12654G 12793C 13500C 14185G 14305A 14766T 15326G 16071T 16320T
    Extras(7): (309.1C) (315.1C) 573.2C 573.3C 573.4C 573.5C 16185T 16286Y 16321T (16519C)

    2) R2(T13500C)

    Defining Markers for haplogroup R2(T13500C):
    HVR2: 73G 152C 263G
    CR: 750G 1438G 2706G 4216C 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 13500C 14305A 14766T 15326G
    HVR1: 16071T
    Marker path from rCRS to haplogroup R2(T13500C) (plus extra markers):
    H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 2706G 7028T ⇨ HV ⇨ 14766T ⇨ R0 ⇨ 73G 11719A ⇨ R ⇨ 4216C ⇨ R2'JT ⇨ 152C 4769A 7657C 8473C 9932A 10685A 12654G 14305A 16071T ⇨ R2 ⇨ 13500C ⇨ R2(T13500C) ⇨ 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 14185G 16185T 16286Y 16320T 16321T (16519C)

    Good Match! Your results also had extra markers for this haplogroup:
    Matches(21): 73G 152C 263G 750G 1438G 2706G 4216C 4769A 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 13500C 14305A 14766T 15326G 16071T
    Extras(14): 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 14185G 16185T 16286Y 16320T 16321T (16519C)

    3) R2

    Defining Markers for haplogroup R2:
    HVR2: 73G 152C 263G
    CR: 750G 1438G 2706G 4216C 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 14305A 14766T 15326G
    HVR1: 16071T
    Marker path from rCRS to haplogroup R2 (plus extra markers):
    H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 2706G 7028T ⇨ HV ⇨ 14766T ⇨ R0 ⇨ 73G 11719A ⇨ R ⇨ 4216C ⇨ R2'JT ⇨ 152C 4769A 7657C 8473C 9932A 10685A 12654G 14305A 16071T ⇨ R2 ⇨ 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 13500C 14185G 16185T 16286Y 16320T 16321T (16519C)

    Good Match! Your results also had extra markers for this haplogroup:
    Matches(20): 73G 152C 263G 750G 1438G 2706G 4216C 4769A 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 14305A 14766T 15326G 16071T
    Extras(15): 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 13500C 14185G 16185T 16286Y 16320T 16321T (16519C)

    3) R2(T13500C T195C)

    Defining Markers for haplogroup R2(T13500C T195C):
    HVR2: 73G 152C 195C 263G
    CR: 750G 1438G 2706G 4216C 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 13500C 14305A 14766T 15326G
    HVR1: 16071T
    Marker path from rCRS to haplogroup R2(T13500C T195C) (plus extra markers):
    H2a2a1(rCRS) ⇨ 263G ⇨ H2a2a ⇨ 8860G 15326G ⇨ H2a2 ⇨ 750G ⇨ H2a ⇨ 4769G ⇨ H2 ⇨ 1438G ⇨ H ⇨ 2706G 7028T ⇨ HV ⇨ 14766T ⇨ R0 ⇨ 73G 11719A ⇨ R ⇨ 4216C ⇨ R2'JT ⇨ 152C 4769A 7657C 8473C 9932A 10685A 12654G 14305A 16071T ⇨ R2 ⇨ 13500C ⇨ R2(T13500C) ⇨ 195C ⇨ R2(T13500C T195C) ⇨ 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 14185G 16185T 16286Y 16320T 16321T (16519C)

    Imperfect Match. Your results contained differences with this haplogroup:
    Matches(21): 73G 152C 263G 750G 1438G 2706G 4216C 4769A 7028T 7657C 8473C 8860G 9932A 10685A 11719A 12654G 13500C 14305A 14766T 15326G 16071T
    Mismatches(1): 195T
    Extras(14): 146C (309.1C) (315.1C) 573.1C 573.2C 573.3C 573.4C 573.5C 8994A 9861C 12793C 14185G 16185T 16286Y 16320T 16321T (16519C)

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  11. #7
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    So there is 3 possibilities
    Being in first that i am R2c

    Already R2c there is results from south arabia as dear Mr MfA expected earlier

  12. #8
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    Quote Originally Posted by Bazqamah View Post
    So there is 3 possibilities
    Being in first that i am R2c

    Already R2c there is results from south arabia as dear Mr MfA expected earlier
    You can upload your mtdna file to https://opensnp.org/. In a few days you'll be in genbank's R list.
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

  13. #9
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    Quote Originally Posted by MfA View Post
    You can upload your mtdna file to https://opensnp.org/. In a few days you'll be in genbank's R list.
    i tried to upload it but i see that most of their work is on autosomal test

    the accepted format is
    Filetype
    23andme-format
    Genes for Good-format
    FamilyTreeDNA, Illumina-Format
    AncestryDNA data
    23andMe-EXOME, VCF-format
    IYG-format (EBI genotyping participants)
    deCODEme-format


    where to upload the fasta format of mtdna

  14. #10
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    Quote Originally Posted by Bazqamah View Post
    i tried to upload it but i see that most of their work is on autosomal test

    the accepted format is
    Filetype
    23andme-format
    Genes for Good-format
    FamilyTreeDNA, Illumina-Format
    AncestryDNA data
    23andMe-EXOME, VCF-format
    IYG-format (EBI genotyping participants)
    deCODEme-format


    where to upload the fasta format of mtdna
    You can send then an email and ask.

    My filetype is still missing, what can I do?
    We are always interested in adding more data. If your company is missing up to now it is, because we did not have an example-file to optimize our parser on it. But if you contact us at [email protected] and send us your file we can fix this, so that all customers of the DTC company of your choice can participate.


    You can also try to submit your file directly to the genbank: http://www.ianlogan.co.uk/submission.htm
    Last edited by MfA; 12-04-2016 at 07:26 AM.
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

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