Page 3 of 21 FirstFirst 1234513 ... LastLast
Results 21 to 30 of 209

Thread: Big Y: What Now?

  1. #21
    Registered Users
    Posts
    1,120
    Sex
    Location
    USA-NC
    Ethnicity
    Caucasian
    Nationality
    USA
    Y-DNA (P)
    R1b-Z2961>ZZ30>ZP106
    mtDNA (M)
    K1a4a1c1

    United States of America United States Tree Flag Bermuda United Kingdom France Italy
    Where can I find the rs type id labels for SNPs in R1b, particularly those for U152, DF27, L21, P312 and U106?
    I think Ancestry.com is testing Y-DNA SNPs but using the rs ids instead of base pair positions.
    dp :-)
    Grace and good eure and long prosperitee. [Lydg. Mum. Goldsmiths]

    ysearch/mitosearch id: atr94 GENBANK/ENA mtDNA id: KF703542 member ISOGG

  2. #22
    Registered Users
    Posts
    162
    Sex
    Omitted
    Nationality
    Dutch
    Y-DNA (P)
    R-DF27>FGC13557
    mtDNA (M)
    H3-T152C!
    Y-DNA (M)
    R-U152>Y22447
    mtDNA (P)
    U5a2c4

    Netherlands Netherlands Limburg Germany Belgium Netherlands Noord-Brabant
    Quote Originally Posted by dp View Post
    Where can I find the rs type id labels for SNPs in R1b, particularly those for U152, DF27, L21, P312 and U106?
    Ybrowse.org has rs type ids in the row with dbSNP149 when you search for a SNP.
    Example : here
    You can doublecheck the position/ID in dbSNP https://www.ncbi.nlm.nih.gov/SNP/.
    Last edited by gotten; 02-01-2017 at 12:39 AM.
     
    Paternal Y-DNA: R-DF27>Z220>S21184>FGC13557>FGC43335, DYS487=Null, MDKA: Arnoldus Otten, d. 1721 Schinnen, NL (FTDNA: N126593)
    Paternal mtDNA: U5a2c4, MDKA: Maria de Baur, d 1761, Sittard, NL
    Paternal grandmother Y-DNA: R-U106>Z18>S17721+, MDKA: Adriaan Petri Brouwers, Oosterhout, NL
    Maternal Y-DNA: R-U152>Y22447+, MDKA: Göttgens, confirmed NPE (FGC: X5ZNK)
    Maternal mtDNA: H3-T152C!, MDKA: Helena Cuijpers, d. 1778 Spaubeek, NL
    Maternal grandmother Y-DNA: I-M253>Z74

  3. The Following User Says Thank You to gotten For This Useful Post:

     dp (02-01-2017)

  4. #23
    Registered Users
    Posts
    1,120
    Sex
    Location
    USA-NC
    Ethnicity
    Caucasian
    Nationality
    USA
    Y-DNA (P)
    R1b-Z2961>ZZ30>ZP106
    mtDNA (M)
    K1a4a1c1

    United States of America United States Tree Flag Bermuda United Kingdom France Italy
    Quote Originally Posted by gotten View Post
    Ybrowse.org has rs type ids in the row with dbSNP149 when you search for a SNP.
    Example for U106: here
    You can doublecheck the position/ID in dbSNP https://www.ncbi.nlm.nih.gov/SNP/.
    Thanks.
    I had some measure of success of searching my relative's Ancestry data file:
    P311 => rs9785659 24 18248698 G G
    P310 =>rs9786283 24 18907236 C C
    U106 =>rs16981293 24 8796078 C C

    next question. What are the ancestral allele values so I can make sure C is ancestral and not derived.
    didnt find P312, U152, L21, etc.
    Maybe I can find out if kit is P310xU106?
    dp :-)
    Last edited by dp; 02-01-2017 at 12:35 AM.
    Grace and good eure and long prosperitee. [Lydg. Mum. Goldsmiths]

    ysearch/mitosearch id: atr94 GENBANK/ENA mtDNA id: KF703542 member ISOGG

  5. #24
    Registered Users
    Posts
    2,161
    Sex

    Quote Originally Posted by dp View Post
    Thanks.
    I had some measure of success of searching my relative's Ancestry data file:
    P311 => rs9785659 24 18248698 G G
    P310 =>rs9786283 24 18907236 C C
    U106 =>rs16981293 24 8796078 C C

    next question. What are the ancestral allele values so I can make sure C is ancestral and not derived.
    didnt find P312, U152, L21, etc.
    Maybe I can find out if kit is P310xU106?
    dp :-)
    I prefer to use the CSV file by Ybrowse at http://ybrowse.org/gbrowse2/gff/ because it provides the position, SNP name, ancestral allele, derived allele, longhand ISOGG name and a column with comments.

    However, dbSNP also works. It shows the mutation to be C>T so C is ancestral. https://www.ncbi.nlm.nih.gov/project...gi?rs=16981293

    What is the reason that you chose a thread on BigY to ask about these things?

  6. The Following User Says Thank You to ArmandoR1b For This Useful Post:

     dp (02-01-2017)

  7. #25
    Registered Users
    Posts
    1,120
    Sex
    Location
    USA-NC
    Ethnicity
    Caucasian
    Nationality
    USA
    Y-DNA (P)
    R1b-Z2961>ZZ30>ZP106
    mtDNA (M)
    K1a4a1c1

    United States of America United States Tree Flag Bermuda United Kingdom France Italy
    Quote Originally Posted by ArmandoR1b View Post
    I prefer to use the CSV file by Ybrowse at http://ybrowse.org/gbrowse2/gff/ because it provides the position, SNP name, ancestral allele, derived allele, longhand ISOGG name and a column with comments.

    However, dbSNP also works. It shows the mutation to be C>T so C is ancestral. https://www.ncbi.nlm.nih.gov/project...gi?rs=16981293

    What is the reason that you chose a thread on BigY to ask about these things?
    simply because I saw people knowledgeable about Y posting to it.
    Thanks for the other link.
    @rich prune these posts if you want. I've saved the page. thanks to all.
    Grace and good eure and long prosperitee. [Lydg. Mum. Goldsmiths]

    ysearch/mitosearch id: atr94 GENBANK/ENA mtDNA id: KF703542 member ISOGG

  8. The Following User Says Thank You to dp For This Useful Post:

     ArmandoR1b (02-01-2017)

  9. #26
    Registered Users
    Posts
    2,161
    Sex

    Quote Originally Posted by dp View Post
    simply because I saw people knowledgeable about Y posting to it.
    Thanks for the other link.
    @rich prune these posts if you want. I've saved the page. thanks to all.
    I just thought of something. You must have the Ancestry v1 and not the Ancestry v2 file since you couldn't find U152 and L21. They are included in v2 files.

  10. The Following User Says Thank You to ArmandoR1b For This Useful Post:

     dp (02-02-2017)

  11. #27
    Registered Users
    Posts
    1,120
    Sex
    Location
    USA-NC
    Ethnicity
    Caucasian
    Nationality
    USA
    Y-DNA (P)
    R1b-Z2961>ZZ30>ZP106
    mtDNA (M)
    K1a4a1c1

    United States of America United States Tree Flag Bermuda United Kingdom France Italy
    Quote Originally Posted by ArmandoR1b View Post
    I just thought of something. You must have the Ancestry v1 and not the Ancestry v2 file since you couldn't find U152 and L21. They are included in v2 files.
    Yep. I run a surname project on FTDNA, and have an original Ancestry kit that was transferred into FTDNA. I was curious what Y-DNA info I could glean :-)
    There was only one branch under P312 that he was tested for, but not U152 or DF27 one of which I think the member is.
    Thanks,
    dp
    Last edited by dp; 02-02-2017 at 10:49 PM.
    Grace and good eure and long prosperitee. [Lydg. Mum. Goldsmiths]

    ysearch/mitosearch id: atr94 GENBANK/ENA mtDNA id: KF703542 member ISOGG

  12. #28
    Gold Class Member
    Posts
    12,014
    Sex
    Location
    Virginia, USA
    Ethnicity
    British and Irish
    Nationality
    USA
    Y-DNA (P)
    R1b-DF41>FGC36981
    mtDNA (M)
    U5a2c3a
    Y-DNA (M)
    R1b-DF27>DF83
    mtDNA (P)
    K1a1

    Wales Ireland Scotland France Bretagne England Switzerland

    I know everyone here was waiting breathlessly for this news: my closest same-surname match got his BAM file from FTDNA today and submitted it to YFull.
     


    Hidden Content


    Y-DNA: R1b-L21> DF13> Z39589> DF41> FGC5572> BY166> FGC36974> FGC36982> FGC36981

    Additional Data:
    Lactase Persistent:
    rs4988235 AA (13910 TT)
    rs182549 TT (22018 AA)

    Red Hair Carrier:
    Arg160Trp+ (rs1805008 T) aka R160W

    Dad's mtDNA: K1a1

  13. The Following 5 Users Say Thank You to rms2 For This Useful Post:

     A.Morup (03-07-2017),  Adrian Stevenson (02-04-2017),  dp (02-04-2017),  JMcB (02-04-2017),  Michał (02-04-2017)

  14. #29
    Gold Class Member
    Posts
    12,014
    Sex
    Location
    Virginia, USA
    Ethnicity
    British and Irish
    Nationality
    USA
    Y-DNA (P)
    R1b-DF41>FGC36981
    mtDNA (M)
    U5a2c3a
    Y-DNA (M)
    R1b-DF27>DF83
    mtDNA (P)
    K1a1

    Wales Ireland Scotland France Bretagne England Switzerland
    I submitted my BAM file to YFull on 30 January 2017. I'm still waiting for the results and have been given a prediction of 27 April for them.

    As I mentioned before, my closest Stevens match (aside from my second cousin, who matches me 111/111) also submitted his BAM file to YFull, as did a third member of our haplotype cluster.

    Anxiously waiting.
     


    Hidden Content


    Y-DNA: R1b-L21> DF13> Z39589> DF41> FGC5572> BY166> FGC36974> FGC36982> FGC36981

    Additional Data:
    Lactase Persistent:
    rs4988235 AA (13910 TT)
    rs182549 TT (22018 AA)

    Red Hair Carrier:
    Arg160Trp+ (rs1805008 T) aka R160W

    Dad's mtDNA: K1a1

  15. The Following User Says Thank You to rms2 For This Useful Post:

     dp (03-08-2017)

  16. #30
    Gold Class Member
    Posts
    2,661
    Sex

    Quote Originally Posted by rms2 View Post
    I submitted my BAM file to YFull on 30 January 2017. I'm still waiting for the results and have been given a prediction of 27 April for them.
    YFull's interface to PayPal has been nonfunctional for several days now. Presumably, YFull does not want to declare any more results complete (and thereby solicit payment) until the PayPal interface is operational again.

    We can only presume that behind the scenes, YFull staff are continuing their analysis of BAM file submissions as usual.

  17. The Following 4 Users Say Thank You to lgmayka For This Useful Post:

     A.Morup (03-07-2017),  gotten (03-07-2017),  razyn (03-07-2017),  rms2 (03-07-2017)

Page 3 of 21 FirstFirst 1234513 ... LastLast

Posting Permissions

  • You may not post new threads
  • You may not post replies
  • You may not post attachments
  • You may not edit your posts
  •